Wall clock time and date at job start Tue Mar 31 2020 14:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30809 * 1 3 3 Si 1.86798 * 119.99957 * 2 1 4 4 H 1.48497 * 109.47150 * 239.99708 * 3 2 1 5 5 H 1.48503 * 109.47318 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47188 * 119.99977 * 3 2 1 7 7 C 1.40013 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00270 * 190.28002 * 7 2 1 9 9 C 1.40835 * 119.99587 * 10.28184 * 7 2 1 10 10 C 1.40729 * 120.32601 * 32.57596 * 9 7 2 11 11 C 1.37590 * 119.85695 * 179.97438 * 10 9 7 12 12 F 1.35096 * 119.74228 * 179.97438 * 11 10 9 13 13 C 1.39238 * 120.51584 * 0.02562 * 11 10 9 14 14 C 1.37935 * 120.66279 * 0.27083 * 13 11 10 15 15 C 1.39247 * 120.13023 * 359.45398 * 14 13 11 16 16 C 1.47708 * 120.26193 * 180.27671 * 15 14 13 17 17 C 1.39813 * 120.07017 * 255.89886 * 16 15 14 18 18 C 1.37664 * 119.92747 * 179.71608 * 17 16 15 19 19 C 1.39207 * 120.06723 * 0.56163 * 18 17 16 20 20 N 1.39339 * 119.92208 * 179.69174 * 19 18 17 21 21 C 1.39162 * 120.14933 * 359.71947 * 19 18 17 22 22 C 1.37699 * 120.07277 * 359.97438 * 21 19 18 23 23 C 1.50703 * 120.03491 * 179.97438 * 22 21 19 24 24 F 1.39896 * 109.47076 * 354.76629 * 23 22 21 25 25 F 1.39907 * 109.46678 * 114.76808 * 23 22 21 26 26 F 1.39898 * 109.47164 * 234.76205 * 23 22 21 27 27 H 0.97001 * 119.99995 * 0.02562 * 1 2 3 28 28 H 1.08008 * 120.07126 * 359.95652 * 10 9 7 29 29 H 1.07997 * 119.66491 * 180.02562 * 13 11 10 30 30 H 1.08002 * 119.93460 * 179.70734 * 14 13 11 31 31 H 1.08001 * 120.03758 * 359.97438 * 17 16 15 32 32 H 1.08000 * 119.96793 * 180.25360 * 18 17 16 33 33 H 0.97000 * 119.99605 * 180.02562 * 20 19 18 34 34 H 0.96997 * 120.00222 * 0.02745 * 20 19 18 35 35 H 1.07995 * 119.95939 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.0959 1.6964 -1.2124 5 1 1.2771 2.7465 -0.0006 6 1 3.0958 1.6964 1.2125 7 6 2.0082 -1.2125 0.0005 8 1 3.0752 -1.2200 0.1675 9 6 1.3209 -2.4225 -0.2166 10 6 0.1959 -2.4589 -1.0613 11 6 -0.4679 -3.6464 -1.2671 12 9 -1.5480 -3.6786 -2.0780 13 6 -0.0360 -4.8149 -0.6452 14 6 1.0604 -4.8024 0.1917 15 6 1.7560 -3.6169 0.4147 16 6 2.9342 -3.6014 1.3055 17 6 2.8310 -3.0696 2.5944 18 6 3.9293 -3.0620 3.4243 19 6 5.1448 -3.5725 2.9772 20 7 6.2563 -3.5574 3.8174 21 6 5.2525 -4.0972 1.6928 22 6 4.1560 -4.1136 0.8599 23 6 4.2737 -4.6815 -0.5310 24 9 5.6077 -5.0168 -0.7865 25 9 3.4766 -5.8265 -0.6361 26 9 3.8458 -3.7286 -1.4616 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1458 -1.5567 -1.5468 29 1 -0.5671 -5.7394 -0.8167 30 1 1.3825 -5.7147 0.6717 31 1 1.8895 -2.6689 2.9401 32 1 3.8493 -2.6551 4.4215 33 1 7.1038 -3.9125 3.5068 34 1 6.1824 -3.1919 4.7128 35 1 6.1968 -4.4928 1.3492 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244756350.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:45 Heat of formation + Delta-G solvation = -157.531260 kcal Electronic energy + Delta-G solvation = -28037.248544 eV Core-core repulsion = 23498.744432 eV Total energy + Delta-G solvation = -4538.504111 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.50870 -47.66282 -47.09633 -46.85547 -39.22310 -37.29254 -34.43183 -33.69988 -31.32914 -30.30506 -29.70029 -27.21997 -25.65588 -25.07650 -22.25127 -21.70195 -21.20394 -20.00540 -17.97002 -17.85685 -17.76239 -17.55070 -16.50873 -15.96221 -15.76212 -15.31011 -14.93511 -14.65711 -14.32599 -14.13502 -13.85613 -13.67253 -13.49275 -13.42657 -13.12191 -13.07658 -12.98706 -12.91839 -12.70145 -12.40810 -12.05944 -11.89807 -11.63067 -11.19584 -11.08836 -10.78613 -10.62587 -10.36799 -10.30515 -9.99589 -9.58490 -9.30502 -8.74110 -7.56120 -7.38426 -7.10499 -6.82069 -4.54694 1.48372 1.90125 2.56344 2.75806 3.02302 3.05565 3.12763 3.29420 3.86472 3.96164 4.05806 4.38740 4.47780 4.74419 5.09966 5.23011 5.32404 5.48036 5.61284 5.65854 5.85871 6.03163 6.25263 6.26045 6.32744 6.47380 6.68197 6.87249 6.93476 7.02762 7.07971 7.16798 7.45736 7.56299 7.64219 7.71452 7.83800 7.86225 8.12068 8.45084 8.70864 8.76139 10.08781 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.010046 B = 0.006879 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.531943 B = 4069.323868 C = 5544.866492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.445 4.445 8 H 0.083 0.917 9 C 0.162 3.838 10 C -0.188 4.188 11 C 0.108 3.892 12 F -0.167 7.167 13 C -0.271 4.271 14 C -0.039 4.039 15 C -0.204 4.204 16 C 0.024 3.976 17 C -0.054 4.054 18 C -0.168 4.168 19 C 0.192 3.808 20 N -0.882 5.882 21 C -0.160 4.160 22 C -0.141 4.141 23 C 0.510 3.490 24 F -0.193 7.193 25 F -0.177 7.177 26 F -0.163 7.163 27 H 0.284 0.716 28 H 0.127 0.873 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.132 0.868 32 H 0.121 0.879 33 H 0.395 0.605 34 H 0.396 0.604 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.115 -4.152 5.962 11.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.474 4.474 8 H 0.101 0.899 9 C 0.159 3.841 10 C -0.208 4.208 11 C 0.088 3.912 12 F -0.146 7.146 13 C -0.291 4.291 14 C -0.058 4.058 15 C -0.205 4.205 16 C 0.022 3.978 17 C -0.073 4.073 18 C -0.191 4.191 19 C 0.090 3.910 20 N -0.422 5.422 21 C -0.183 4.183 22 C -0.143 4.143 23 C 0.456 3.544 24 F -0.174 7.174 25 F -0.158 7.158 26 F -0.144 7.144 27 H 0.095 0.905 28 H 0.145 0.855 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.150 0.850 32 H 0.139 0.861 33 H 0.222 0.778 34 H 0.224 0.776 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.817 -3.992 5.866 11.318 hybrid contribution 0.444 0.734 -0.127 0.867 sum 9.261 -3.259 5.738 11.372 Atomic orbital electron populations 1.69763 1.07487 1.29701 1.34700 1.25936 0.94794 1.01340 0.92183 0.86340 0.80114 0.80049 0.80217 1.18664 1.20262 1.18810 1.19408 0.96019 0.89936 1.42038 0.89913 1.17170 0.89332 0.91083 0.86513 1.21209 1.00460 0.95483 1.03617 1.17792 0.85213 0.95529 0.92627 1.91336 1.53969 1.97522 1.71786 1.20180 1.03797 0.96188 1.08932 1.20389 0.93752 0.95726 0.95893 1.18578 1.00633 0.95156 1.06167 1.18218 0.91209 0.94988 0.93362 1.21112 0.98236 0.95794 0.92110 1.20681 0.92044 1.05636 1.00718 1.17527 0.87831 0.95748 0.89932 1.42231 1.10515 1.72489 1.16960 1.20085 0.98328 1.06627 0.93263 1.19868 0.95986 1.06131 0.92310 1.18250 0.72634 0.76178 0.87343 1.93089 1.36136 1.92938 1.95261 1.93190 1.73984 1.51876 1.96766 1.93275 1.89501 1.63675 1.67938 0.90509 0.85483 0.88042 0.88088 0.84979 0.86144 0.77771 0.77645 0.85659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.60 11.08 55.55 0.62 -18.98 16 2 C 0.08 1.82 5.24 -17.32 -0.09 1.72 16 3 Si 0.91 18.16 29.57 -169.99 -5.03 13.13 16 4 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.45 -11.02 8.24 -37.94 -0.31 -11.34 16 8 H 0.08 2.04 7.42 -52.49 -0.39 1.65 16 9 C 0.16 4.05 5.36 -106.56 -0.57 3.48 16 10 C -0.19 -4.82 8.59 -38.88 -0.33 -5.16 16 11 C 0.11 2.62 7.28 -39.45 -0.29 2.34 16 12 F -0.17 -3.96 17.26 2.25 0.04 -3.92 16 13 C -0.27 -6.11 10.01 -39.32 -0.39 -6.50 16 14 C -0.04 -0.86 8.04 -39.32 -0.32 -1.17 16 15 C -0.20 -4.60 3.63 -104.24 -0.38 -4.98 16 16 C 0.02 0.49 4.17 -104.87 -0.44 0.05 16 17 C -0.05 -0.96 9.62 -39.20 -0.38 -1.34 16 18 C -0.17 -2.49 9.87 -39.43 -0.39 -2.88 16 19 C 0.19 2.68 6.76 -83.74 -0.57 2.12 16 20 N -0.88 -8.61 9.07 32.45 0.29 -8.31 16 21 C -0.16 -2.48 9.26 -39.44 -0.37 -2.85 16 22 C -0.14 -2.60 5.41 -104.24 -0.56 -3.16 16 23 C 0.51 9.64 2.89 36.01 0.10 9.74 16 24 F -0.19 -3.26 15.99 2.25 0.04 -3.22 16 25 F -0.18 -3.38 15.05 2.25 0.03 -3.35 16 26 F -0.16 -3.49 16.04 2.25 0.04 -3.45 16 27 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 28 H 0.13 3.40 6.50 -52.48 -0.34 3.06 16 29 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.10 1.99 7.71 -52.49 -0.40 1.59 16 31 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 32 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.39 3.14 8.83 -40.82 -0.36 2.77 16 34 H 0.40 3.05 8.83 -40.82 -0.36 2.69 16 35 H 0.13 1.70 7.16 -52.49 -0.38 1.32 16 LS Contribution 318.67 15.07 4.80 4.80 Total: -1.00 -26.99 318.67 -7.08 -34.07 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -2.64 Total: 9.15 kcal Atomic # 6 Polarization: -14.65 SS G_CDS: -5.28 Total: -19.93 kcal Atomic # 7 Polarization: -28.20 SS G_CDS: 0.91 Total: -27.29 kcal Atomic # 9 Polarization: -14.08 SS G_CDS: 0.14 Total: -13.94 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -26.99 -7.08 -34.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244756350.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.458 kcal (2) G-P(sol) polarization free energy of solvation -26.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds