Wall clock time and date at job start Tue Mar 31 2020 14:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30809 * 1 3 3 Si 1.86798 * 119.99957 * 2 1 4 4 H 1.48497 * 109.47150 * 239.99708 * 3 2 1 5 5 H 1.48503 * 109.47318 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47188 * 119.99977 * 3 2 1 7 7 C 1.40013 * 120.00162 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00270 * 190.28002 * 7 2 1 9 9 C 1.40835 * 119.99587 * 10.28184 * 7 2 1 10 10 C 1.40729 * 120.32601 * 32.57596 * 9 7 2 11 11 C 1.37590 * 119.85695 * 179.97438 * 10 9 7 12 12 F 1.35096 * 119.74228 * 179.97438 * 11 10 9 13 13 C 1.39238 * 120.51584 * 0.02562 * 11 10 9 14 14 C 1.37935 * 120.66279 * 0.27083 * 13 11 10 15 15 C 1.39247 * 120.13023 * 359.45398 * 14 13 11 16 16 C 1.47708 * 120.26193 * 180.27671 * 15 14 13 17 17 C 1.39813 * 120.07017 * 255.89886 * 16 15 14 18 18 C 1.37664 * 119.92747 * 179.71608 * 17 16 15 19 19 C 1.39207 * 120.06723 * 0.56163 * 18 17 16 20 20 N 1.39339 * 119.92208 * 179.69174 * 19 18 17 21 21 C 1.39162 * 120.14933 * 359.71947 * 19 18 17 22 22 C 1.37699 * 120.07277 * 359.97438 * 21 19 18 23 23 C 1.50703 * 120.03491 * 179.97438 * 22 21 19 24 24 F 1.39896 * 109.47076 * 354.76629 * 23 22 21 25 25 F 1.39907 * 109.46678 * 114.76808 * 23 22 21 26 26 F 1.39898 * 109.47164 * 234.76205 * 23 22 21 27 27 H 0.97001 * 119.99995 * 0.02562 * 1 2 3 28 28 H 1.08008 * 120.07126 * 359.95652 * 10 9 7 29 29 H 1.07997 * 119.66491 * 180.02562 * 13 11 10 30 30 H 1.08002 * 119.93460 * 179.70734 * 14 13 11 31 31 H 1.08001 * 120.03758 * 359.97438 * 17 16 15 32 32 H 1.08000 * 119.96793 * 180.25360 * 18 17 16 33 33 H 0.97000 * 119.99605 * 180.02562 * 20 19 18 34 34 H 0.96997 * 120.00222 * 0.02745 * 20 19 18 35 35 H 1.07995 * 119.95939 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.0959 1.6964 -1.2124 5 1 1.2771 2.7465 -0.0006 6 1 3.0958 1.6964 1.2125 7 6 2.0082 -1.2125 0.0005 8 1 3.0752 -1.2200 0.1675 9 6 1.3209 -2.4225 -0.2166 10 6 0.1959 -2.4589 -1.0613 11 6 -0.4679 -3.6464 -1.2671 12 9 -1.5480 -3.6786 -2.0780 13 6 -0.0360 -4.8149 -0.6452 14 6 1.0604 -4.8024 0.1917 15 6 1.7560 -3.6169 0.4147 16 6 2.9342 -3.6014 1.3055 17 6 2.8310 -3.0696 2.5944 18 6 3.9293 -3.0620 3.4243 19 6 5.1448 -3.5725 2.9772 20 7 6.2563 -3.5574 3.8174 21 6 5.2525 -4.0972 1.6928 22 6 4.1560 -4.1136 0.8599 23 6 4.2737 -4.6815 -0.5310 24 9 5.6077 -5.0168 -0.7865 25 9 3.4766 -5.8265 -0.6361 26 9 3.8458 -3.7286 -1.4616 27 1 -0.4850 0.8401 -0.0004 28 1 -0.1458 -1.5567 -1.5468 29 1 -0.5671 -5.7394 -0.8167 30 1 1.3825 -5.7147 0.6717 31 1 1.8895 -2.6689 2.9401 32 1 3.8493 -2.6551 4.4215 33 1 7.1038 -3.9125 3.5068 34 1 6.1824 -3.1919 4.7128 35 1 6.1968 -4.4928 1.3492 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244756350.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:44 Heat of formation + Delta-G solvation = -170.636373 kcal Electronic energy + Delta-G solvation = -28037.816824 eV Core-core repulsion = 23498.744432 eV Total energy + Delta-G solvation = -4539.072392 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.99652 -49.56632 -48.54393 -48.41902 -40.56252 -38.94741 -35.69234 -35.43398 -32.62959 -31.87888 -31.45443 -28.69144 -27.30363 -26.61019 -23.64828 -23.28658 -22.84248 -21.59920 -19.48571 -19.33684 -19.27325 -19.13982 -17.76971 -17.54988 -17.25461 -16.71286 -16.50659 -16.43443 -16.22341 -15.51918 -15.36467 -15.08109 -14.92137 -14.88038 -14.74166 -14.62931 -14.56444 -14.30403 -14.22897 -13.90205 -13.75424 -13.37385 -13.29694 -12.83148 -12.76963 -12.37406 -12.15721 -11.93889 -11.75365 -11.66874 -11.18574 -11.08370 -10.01408 -9.41866 -9.14743 -8.64630 -8.24451 -6.41171 0.19165 0.54995 0.81273 0.95189 1.38903 1.49192 1.50659 1.85233 2.20137 2.66875 2.76717 2.85997 3.10700 3.34370 3.51832 3.61899 3.79651 4.06966 4.13631 4.30484 4.45458 4.54104 4.65444 4.78994 5.02078 5.02532 5.09675 5.22091 5.30024 5.34552 5.64358 5.73546 5.74578 5.78502 5.93714 6.03904 6.28260 6.58222 6.63999 6.87729 6.91706 7.10548 8.32568 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.010046 B = 0.006879 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.531943 B = 4069.323868 C = 5544.866492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.038 3.962 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.253 1.253 7 C -0.462 4.462 8 H 0.079 0.921 9 C 0.138 3.862 10 C -0.215 4.215 11 C 0.091 3.909 12 F -0.168 7.168 13 C -0.270 4.270 14 C -0.045 4.045 15 C -0.189 4.189 16 C -0.015 4.015 17 C -0.064 4.064 18 C -0.163 4.163 19 C 0.211 3.789 20 N -0.860 5.860 21 C -0.163 4.163 22 C -0.148 4.148 23 C 0.507 3.493 24 F -0.180 7.180 25 F -0.181 7.181 26 F -0.184 7.184 27 H 0.289 0.711 28 H 0.105 0.895 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.153 0.847 33 H 0.408 0.592 34 H 0.411 0.589 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.733 -4.411 8.114 14.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.177 4.177 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.177 1.177 7 C -0.491 4.491 8 H 0.097 0.903 9 C 0.135 3.865 10 C -0.235 4.235 11 C 0.072 3.928 12 F -0.147 7.147 13 C -0.290 4.290 14 C -0.063 4.063 15 C -0.190 4.190 16 C -0.017 4.017 17 C -0.083 4.083 18 C -0.186 4.186 19 C 0.105 3.895 20 N -0.401 5.401 21 C -0.186 4.186 22 C -0.150 4.150 23 C 0.453 3.547 24 F -0.162 7.162 25 F -0.162 7.162 26 F -0.165 7.165 27 H 0.099 0.901 28 H 0.123 0.877 29 H 0.142 0.858 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.170 0.830 33 H 0.238 0.762 34 H 0.241 0.759 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.471 -4.268 8.049 14.649 hybrid contribution -0.254 0.696 -0.704 1.022 sum 11.217 -3.572 7.345 13.875 Atomic orbital electron populations 1.69835 1.08868 1.30705 1.35646 1.26702 0.95408 1.04254 0.91359 0.85374 0.78896 0.76115 0.80238 1.18893 1.19422 1.17737 1.19477 0.95795 0.90631 1.43206 0.90323 1.17472 0.89528 0.92515 0.86940 1.21153 1.02017 0.95292 1.05084 1.17978 0.85487 0.95978 0.93329 1.91319 1.53954 1.97549 1.71853 1.20474 1.03969 0.96287 1.08293 1.20707 0.93344 0.96560 0.95663 1.18887 1.00909 0.94297 1.04924 1.18125 0.90979 0.98490 0.94127 1.21054 0.99064 0.96203 0.92000 1.20914 0.91232 1.04903 1.01525 1.17563 0.88621 0.93644 0.89663 1.42211 1.09784 1.71091 1.17002 1.20313 0.98201 1.06534 0.93561 1.19831 0.96405 1.06583 0.92144 1.18414 0.72981 0.75785 0.87474 1.93103 1.35041 1.92789 1.95229 1.93172 1.74242 1.51980 1.96798 1.93236 1.89845 1.64563 1.68849 0.90069 0.87667 0.85769 0.85769 0.86211 0.82974 0.76207 0.75912 0.83503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.37 11.08 21.84 0.24 -42.12 16 2 C 0.04 1.86 5.24 85.28 0.45 2.31 16 3 Si 0.97 37.44 29.57 68.60 2.03 39.47 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 6 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 7 C -0.46 -23.59 8.24 23.34 0.19 -23.40 16 8 H 0.08 3.97 7.42 -2.91 -0.02 3.94 16 9 C 0.14 7.18 5.36 -21.12 -0.11 7.07 16 10 C -0.22 -11.64 8.59 22.73 0.20 -11.44 16 11 C 0.09 4.61 7.28 22.36 0.16 4.77 16 12 F -0.17 -8.19 17.26 44.97 0.78 -7.42 16 13 C -0.27 -12.28 10.01 22.44 0.22 -12.05 16 14 C -0.04 -1.94 8.04 22.44 0.18 -1.76 16 15 C -0.19 -8.67 3.63 -19.62 -0.07 -8.74 16 16 C -0.01 -0.59 4.17 -20.02 -0.08 -0.67 16 17 C -0.06 -2.24 9.62 22.52 0.22 -2.03 16 18 C -0.16 -4.31 9.87 22.37 0.22 -4.09 16 19 C 0.21 5.05 6.76 38.40 0.26 5.31 16 20 N -0.86 -12.48 9.07 -51.24 -0.46 -12.94 16 21 C -0.16 -4.57 9.26 22.36 0.21 -4.36 16 22 C -0.15 -5.25 5.41 -19.62 -0.11 -5.36 16 23 C 0.51 18.84 2.89 71.24 0.21 19.04 16 24 F -0.18 -5.81 15.99 44.97 0.72 -5.09 16 25 F -0.18 -6.79 15.05 44.97 0.68 -6.11 16 26 F -0.18 -8.00 16.04 44.97 0.72 -7.27 16 27 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 28 H 0.11 6.02 6.50 -2.91 -0.02 6.00 16 29 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 30 H 0.12 4.77 7.71 -2.91 -0.02 4.75 16 31 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 32 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 33 H 0.41 4.37 8.83 -92.71 -0.82 3.55 16 34 H 0.41 4.13 8.83 -92.71 -0.82 3.31 16 35 H 0.15 3.41 7.16 -2.91 -0.02 3.39 16 Total: -1.00 -60.52 318.67 6.40 -54.13 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: -0.44 Total: 22.75 kcal Atomic # 6 Polarization: -37.52 SS G_CDS: 2.14 Total: -35.39 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.22 Total: -55.07 kcal Atomic # 9 Polarization: -28.78 SS G_CDS: 2.89 Total: -25.89 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Total: -60.52 6.40 -54.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244756350.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.511 kcal (2) G-P(sol) polarization free energy of solvation -60.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds