Wall clock time and date at job start Tue Mar 31 2020 14:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99736 * 2 1 4 4 H 1.48500 * 109.47445 * 240.00205 * 3 2 1 5 5 H 1.48504 * 109.47299 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46830 * 120.00160 * 3 2 1 7 7 C 1.37873 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99700 * 359.97438 * 7 2 1 10 10 O 1.42904 * 113.28478 * 46.93366 * 9 7 2 11 11 C 1.53496 * 114.20617 * 180.02562 * 9 7 2 12 12 N 1.47075 * 87.98708 * 139.85536 * 11 9 7 13 13 C 1.34773 * 136.05927 * 152.84687 * 12 11 9 14 14 O 1.21586 * 120.00211 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99754 * 179.97438 * 13 12 11 16 16 C 1.40082 * 119.99872 * 185.63475 * 15 13 12 17 17 C 1.38795 * 120.07520 * 24.78127 * 16 15 13 18 18 C 1.38150 * 119.95349 * 180.22952 * 17 16 15 19 19 C 1.38283 * 120.11062 * 359.51185 * 18 17 16 20 20 N 1.48016 * 119.92347 * 180.27523 * 19 18 17 21 21 O 1.21802 * 119.99993 * 359.97438 * 20 19 18 22 22 O 1.21799 * 120.00283 * 179.97438 * 20 19 18 23 23 C 1.38270 * 120.15442 * 0.25657 * 19 18 17 24 24 C 1.38310 * 120.04101 * 359.97438 * 23 19 18 25 25 F 1.35104 * 120.05387 * 180.02562 * 24 23 19 26 26 C 1.47076 * 87.88004 * 333.10215 * 12 11 9 27 27 H 0.96998 * 119.99857 * 359.97438 * 1 2 3 28 28 H 0.96700 * 114.00112 * 313.06700 * 10 9 7 29 29 H 1.08999 * 113.46887 * 25.07791 * 11 9 7 30 30 H 1.08996 * 113.46897 * 254.63210 * 11 9 7 31 31 H 0.97002 * 120.00192 * 5.64009 * 15 13 12 32 32 H 1.08000 * 120.02432 * 0.02562 * 17 16 15 33 33 H 1.07995 * 119.94780 * 179.78638 * 18 17 16 34 34 H 1.07999 * 119.97990 * 180.02562 * 23 19 18 35 35 H 1.08997 * 113.46044 * 141.68319 * 26 12 11 36 36 H 1.09001 * 113.46316 * 272.12011 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2841 2.7466 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4990 -0.0005 10 8 0.1921 -2.5399 -0.9591 11 6 2.1489 -3.7441 -0.0005 12 7 1.2074 -4.3593 0.9471 13 6 0.8312 -5.6139 1.2650 14 8 1.3276 -6.5620 0.6880 15 7 -0.0953 -5.8173 2.2224 16 6 -0.4007 -7.1204 2.6358 17 6 0.5343 -8.1351 2.4850 18 6 0.2287 -9.4203 2.8892 19 6 -1.0035 -9.6956 3.4532 20 7 -1.3243 -11.0729 3.8904 21 8 -0.5035 -11.9622 3.7529 22 8 -2.4090 -11.3169 4.3878 23 6 -1.9366 -8.6873 3.6100 24 6 -1.6391 -7.3993 3.2031 25 9 -2.5503 -6.4138 3.3566 26 6 0.8523 -3.0027 1.3906 27 1 -0.4850 0.8400 0.0004 28 1 -0.3716 -1.7542 -0.9562 29 1 3.1374 -3.5665 0.4232 30 1 2.1879 -4.2511 -0.9646 31 1 -0.5507 -5.0615 2.6251 32 1 1.4988 -7.9208 2.0489 33 1 0.9549 -10.2104 2.7687 34 1 -2.8979 -8.9054 4.0511 35 1 -0.2090 -2.8808 1.6071 36 1 1.4919 -2.6257 2.1887 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327729397.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:22 Heat of formation + Delta-G solvation = -45.879419 kcal Electronic energy + Delta-G solvation = -26763.034616 eV Core-core repulsion = 22360.379569 eV Total energy + Delta-G solvation = -4402.655047 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.095 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.40690 -42.32975 -40.84199 -39.40515 -37.98866 -36.71568 -35.09321 -34.29610 -32.36561 -31.48137 -31.05382 -28.82868 -26.53644 -25.44028 -25.26332 -23.84882 -22.67581 -20.96089 -19.81158 -19.46634 -18.82720 -18.35755 -17.84765 -17.69698 -17.18909 -16.80018 -16.52335 -16.13969 -15.60306 -15.43935 -15.19871 -14.59542 -14.28720 -14.11215 -13.57509 -13.37902 -13.19005 -12.95370 -12.86690 -12.41910 -12.26110 -11.73078 -11.72224 -11.41376 -11.29539 -11.23690 -11.18893 -11.15477 -10.65585 -10.46725 -10.25282 -9.60788 -9.50262 -8.96810 -8.85513 -8.63013 -8.14637 -6.57213 -4.68491 -0.42584 0.47249 1.06613 1.17720 2.24573 2.72946 3.05307 3.12497 3.14149 3.25498 3.49300 3.76714 4.00193 4.05052 4.22647 4.39039 4.66007 4.79477 4.85783 5.27886 5.32757 5.36253 5.51692 5.65426 5.78260 5.83105 6.05715 6.10774 6.15308 6.25867 6.33256 6.39978 6.82093 7.01006 7.46285 7.48133 7.60082 8.13357 8.35526 8.46128 9.03682 9.29271 10.49706 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.032705 B = 0.002524 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.940412 B =11090.116202 C =11603.798138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.243 3.757 10 O -0.571 6.571 11 C 0.128 3.872 12 N -0.644 5.644 13 C 0.728 3.272 14 O -0.581 6.581 15 N -0.675 5.675 16 C 0.217 3.783 17 C -0.114 4.114 18 C -0.033 4.033 19 C -0.057 4.057 20 N 0.037 4.963 21 O -0.161 6.161 22 O -0.166 6.166 23 C -0.063 4.063 24 C 0.058 3.942 25 F -0.120 7.120 26 C 0.066 3.934 27 H 0.276 0.724 28 H 0.395 0.605 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.417 0.583 32 H 0.182 0.818 33 H 0.162 0.838 34 H 0.167 0.833 35 H 0.064 0.936 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.354 -9.782 7.631 12.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.738 3.262 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.574 4.574 8 H 0.092 0.908 9 C 0.201 3.799 10 O -0.384 6.384 11 C 0.006 3.994 12 N -0.379 5.379 13 C 0.432 3.568 14 O -0.461 6.461 15 N -0.319 5.319 16 C 0.115 3.885 17 C -0.136 4.136 18 C -0.053 4.053 19 C -0.142 4.142 20 N 0.555 4.445 21 O -0.376 6.376 22 O -0.381 6.381 23 C -0.084 4.084 24 C 0.034 3.966 25 F -0.099 7.099 26 C -0.056 4.056 27 H 0.087 0.913 28 H 0.252 0.748 29 H 0.108 0.892 30 H 0.090 0.910 31 H 0.254 0.746 32 H 0.199 0.801 33 H 0.180 0.820 34 H 0.185 0.815 35 H 0.083 0.917 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.785 -10.255 6.856 12.361 hybrid contribution -0.564 1.670 0.651 1.878 sum -1.348 -8.585 7.507 11.484 Atomic orbital electron populations 1.69236 1.06258 1.28593 1.49673 1.25091 0.95056 1.00094 0.92759 0.86324 0.79473 0.81296 0.79099 1.19702 1.20915 1.19812 1.21343 0.93955 0.89487 1.52663 0.90762 1.19461 0.85476 0.91075 0.83900 1.86055 1.45079 1.48515 1.58797 1.23371 0.93262 0.91202 0.91520 1.48914 1.43814 1.02940 1.42193 1.15171 0.79497 0.82791 0.79296 1.90844 1.59568 1.39916 1.55730 1.42800 1.42593 1.06181 1.40330 1.18003 0.91239 0.86274 0.93023 1.21514 1.01542 0.89792 1.00710 1.21033 0.94033 0.98105 0.92175 1.20649 0.98506 0.82396 1.12667 1.43442 1.00138 1.02799 0.98140 1.94543 1.44341 1.39140 1.59598 1.94538 1.10653 1.88372 1.44509 1.20586 1.00756 0.89385 0.97662 1.16827 0.86375 0.85695 1.07655 1.91573 1.64822 1.59528 1.93964 1.24341 1.00552 0.77244 1.03501 0.91330 0.74768 0.89154 0.91033 0.74554 0.80092 0.82035 0.81518 0.91734 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.19 11.01 55.43 0.61 -20.58 16 2 C 0.07 1.68 5.39 -17.82 -0.10 1.59 16 3 Si 0.91 18.15 29.54 -169.99 -5.02 13.13 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.54 -12.26 8.70 -34.44 -0.30 -12.56 16 8 H 0.07 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.24 5.25 1.57 -91.39 -0.14 5.11 16 10 O -0.57 -13.62 13.53 -35.23 -0.48 -14.09 16 11 C 0.13 2.46 8.04 -8.50 -0.07 2.39 16 12 N -0.64 -11.78 3.69 -191.15 -0.71 -12.49 16 13 C 0.73 12.73 8.60 -86.93 -0.75 11.99 16 14 O -0.58 -11.22 14.29 5.29 0.08 -11.15 16 15 N -0.68 -9.47 5.32 -14.17 -0.08 -9.55 16 16 C 0.22 2.73 6.44 -83.58 -0.54 2.19 16 17 C -0.11 -1.36 8.72 -39.41 -0.34 -1.70 16 18 C -0.03 -0.35 9.55 -39.60 -0.38 -0.73 16 19 C -0.06 -0.64 6.85 -79.92 -0.55 -1.19 16 20 N 0.04 0.47 4.45 33.98 0.15 0.62 16 21 O -0.16 -2.13 18.44 -29.46 -0.54 -2.67 16 22 O -0.17 -2.21 18.44 -29.46 -0.54 -2.75 16 23 C -0.06 -0.66 9.53 -39.54 -0.38 -1.03 16 24 C 0.06 0.66 7.31 -39.26 -0.29 0.37 16 25 F -0.12 -1.40 16.81 2.25 0.04 -1.36 16 26 C 0.07 1.24 7.70 -8.63 -0.07 1.17 16 27 H 0.28 6.25 8.31 -40.82 -0.34 5.91 16 28 H 0.40 9.61 6.32 45.56 0.29 9.90 16 29 H 0.09 1.55 8.10 -51.93 -0.42 1.12 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.42 5.27 8.18 -40.82 -0.33 4.93 16 32 H 0.18 2.36 5.79 -52.49 -0.30 2.06 16 33 H 0.16 1.39 7.60 -52.49 -0.40 0.99 16 34 H 0.17 1.45 7.60 -52.49 -0.40 1.05 16 35 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.09 1.51 8.10 -51.93 -0.42 1.09 16 LS Contribution 329.34 15.07 4.96 4.96 Total: -1.00 -25.81 329.34 -7.80 -33.60 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -2.38 Total: 14.72 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: -3.89 Total: 7.59 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: -0.02 Total: -42.00 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -1.49 Total: -30.66 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.02 Total: 13.13 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -25.81 -7.80 -33.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327729397.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.276 kcal (2) G-P(sol) polarization free energy of solvation -25.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds