Wall clock time and date at job start Tue Mar 31 2020 14:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99736 * 2 1 4 4 H 1.48500 * 109.47445 * 240.00205 * 3 2 1 5 5 H 1.48504 * 109.47299 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46830 * 120.00160 * 3 2 1 7 7 C 1.37873 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99700 * 359.97438 * 7 2 1 10 10 O 1.42904 * 113.28478 * 46.93366 * 9 7 2 11 11 C 1.53496 * 114.20617 * 180.02562 * 9 7 2 12 12 N 1.47075 * 87.98708 * 139.85536 * 11 9 7 13 13 C 1.34773 * 136.05927 * 152.84687 * 12 11 9 14 14 O 1.21586 * 120.00211 * 359.97438 * 13 12 11 15 15 N 1.34771 * 119.99754 * 179.97438 * 13 12 11 16 16 C 1.40082 * 119.99872 * 185.63475 * 15 13 12 17 17 C 1.38795 * 120.07520 * 24.78127 * 16 15 13 18 18 C 1.38150 * 119.95349 * 180.22952 * 17 16 15 19 19 C 1.38283 * 120.11062 * 359.51185 * 18 17 16 20 20 N 1.48016 * 119.92347 * 180.27523 * 19 18 17 21 21 O 1.21802 * 119.99993 * 359.97438 * 20 19 18 22 22 O 1.21799 * 120.00283 * 179.97438 * 20 19 18 23 23 C 1.38270 * 120.15442 * 0.25657 * 19 18 17 24 24 C 1.38310 * 120.04101 * 359.97438 * 23 19 18 25 25 F 1.35104 * 120.05387 * 180.02562 * 24 23 19 26 26 C 1.47076 * 87.88004 * 333.10215 * 12 11 9 27 27 H 0.96998 * 119.99857 * 359.97438 * 1 2 3 28 28 H 0.96700 * 114.00112 * 313.06700 * 10 9 7 29 29 H 1.08999 * 113.46887 * 25.07791 * 11 9 7 30 30 H 1.08996 * 113.46897 * 254.63210 * 11 9 7 31 31 H 0.97002 * 120.00192 * 5.64009 * 15 13 12 32 32 H 1.08000 * 120.02432 * 0.02562 * 17 16 15 33 33 H 1.07995 * 119.94780 * 179.78638 * 18 17 16 34 34 H 1.07999 * 119.97990 * 180.02562 * 23 19 18 35 35 H 1.08997 * 113.46044 * 141.68319 * 26 12 11 36 36 H 1.09001 * 113.46316 * 272.12011 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2841 2.7466 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4990 -0.0005 10 8 0.1921 -2.5399 -0.9591 11 6 2.1489 -3.7441 -0.0005 12 7 1.2074 -4.3593 0.9471 13 6 0.8312 -5.6139 1.2650 14 8 1.3276 -6.5620 0.6880 15 7 -0.0953 -5.8173 2.2224 16 6 -0.4007 -7.1204 2.6358 17 6 0.5343 -8.1351 2.4850 18 6 0.2287 -9.4203 2.8892 19 6 -1.0035 -9.6956 3.4532 20 7 -1.3243 -11.0729 3.8904 21 8 -0.5035 -11.9622 3.7529 22 8 -2.4090 -11.3169 4.3878 23 6 -1.9366 -8.6873 3.6100 24 6 -1.6391 -7.3993 3.2031 25 9 -2.5503 -6.4138 3.3566 26 6 0.8523 -3.0027 1.3906 27 1 -0.4850 0.8400 0.0004 28 1 -0.3716 -1.7542 -0.9562 29 1 3.1374 -3.5665 0.4232 30 1 2.1879 -4.2511 -0.9646 31 1 -0.5507 -5.0615 2.6251 32 1 1.4988 -7.9208 2.0489 33 1 0.9549 -10.2104 2.7687 34 1 -2.8979 -8.9054 4.0511 35 1 -0.2090 -2.8808 1.6071 36 1 1.4919 -2.6257 2.1887 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327729397.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:22 Heat of formation + Delta-G solvation = -61.409988 kcal Electronic energy + Delta-G solvation = -26763.708072 eV Core-core repulsion = 22360.379569 eV Total energy + Delta-G solvation = -4403.328503 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.095 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.32827 -43.31167 -42.10170 -40.66133 -39.30328 -37.71817 -36.28753 -35.98218 -34.13641 -32.47453 -32.07114 -30.26892 -27.79378 -26.96532 -26.67318 -24.80452 -23.69966 -22.34395 -20.96426 -20.64498 -19.93717 -19.61420 -19.28800 -18.67520 -18.58732 -17.72378 -17.56768 -17.19790 -17.11667 -16.80922 -16.63174 -15.94526 -15.54596 -15.27984 -14.88129 -14.67097 -14.52312 -14.18504 -14.03559 -13.80005 -13.41885 -13.34021 -12.83138 -12.77703 -12.73734 -12.43008 -12.31811 -12.29330 -12.23962 -12.20147 -11.66616 -11.16103 -10.69559 -10.46366 -10.32791 -9.98231 -9.53272 -8.29743 -6.46252 -1.40516 -0.41106 0.06630 0.21560 1.02362 1.48461 1.51978 1.57926 1.63075 2.07976 2.37221 2.47481 2.58411 2.94189 3.10408 3.35946 3.44101 3.67025 3.86865 3.92563 4.06128 4.31200 4.41963 4.48970 4.57336 4.61261 4.68071 4.79319 4.81065 4.85819 5.09592 5.19799 5.33590 5.70994 5.74074 5.89058 6.45068 6.60254 6.73370 7.09615 7.28069 7.46068 8.76068 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.032705 B = 0.002524 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.940412 B =11090.116202 C =11603.798138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.033 3.967 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.550 4.550 8 H 0.078 0.922 9 C 0.218 3.782 10 O -0.587 6.587 11 C 0.132 3.868 12 N -0.647 5.647 13 C 0.729 3.271 14 O -0.602 6.602 15 N -0.668 5.668 16 C 0.202 3.798 17 C -0.116 4.116 18 C -0.020 4.020 19 C -0.058 4.058 20 N 0.037 4.963 21 O -0.170 6.170 22 O -0.174 6.174 23 C -0.051 4.051 24 C 0.064 3.936 25 F -0.121 7.121 26 C 0.082 3.918 27 H 0.276 0.724 28 H 0.390 0.610 29 H 0.112 0.888 30 H 0.060 0.940 31 H 0.424 0.576 32 H 0.172 0.828 33 H 0.181 0.819 34 H 0.187 0.813 35 H 0.063 0.937 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.199 -10.146 8.675 13.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.168 4.168 3 Si 0.793 3.207 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.588 4.588 8 H 0.096 0.904 9 C 0.176 3.824 10 O -0.400 6.400 11 C 0.010 3.990 12 N -0.382 5.382 13 C 0.433 3.567 14 O -0.483 6.483 15 N -0.313 5.313 16 C 0.101 3.899 17 C -0.137 4.137 18 C -0.039 4.039 19 C -0.143 4.143 20 N 0.553 4.447 21 O -0.384 6.384 22 O -0.387 6.387 23 C -0.072 4.072 24 C 0.041 3.959 25 F -0.100 7.100 26 C -0.040 4.040 27 H 0.086 0.914 28 H 0.246 0.754 29 H 0.130 0.870 30 H 0.078 0.922 31 H 0.262 0.738 32 H 0.189 0.811 33 H 0.199 0.801 34 H 0.204 0.796 35 H 0.081 0.919 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.642 -10.657 7.933 13.301 hybrid contribution -0.635 1.696 0.325 1.840 sum -1.277 -8.961 8.258 12.252 Atomic orbital electron populations 1.69306 1.07151 1.29032 1.50319 1.25738 0.95710 1.02643 0.92660 0.85441 0.78234 0.78020 0.78961 1.20015 1.21182 1.19114 1.21615 0.94339 0.90271 1.52554 0.90359 1.19770 0.85646 0.91821 0.85146 1.86040 1.45675 1.48230 1.60044 1.23334 0.94001 0.90074 0.91608 1.48803 1.43934 1.03205 1.42221 1.15226 0.79788 0.82091 0.79628 1.90834 1.60488 1.40288 1.56680 1.42569 1.41828 1.07186 1.39683 1.18176 0.92080 0.85726 0.93935 1.21384 1.01089 0.90203 1.01040 1.21155 0.94097 0.97904 0.90792 1.20710 0.98943 0.81818 1.12847 1.43585 0.99974 1.03159 0.97933 1.94544 1.44350 1.39638 1.59860 1.94537 1.10806 1.88618 1.44778 1.20734 1.01280 0.88568 0.96570 1.16739 0.85837 0.85941 1.07431 1.91578 1.64771 1.59648 1.93961 1.24089 1.00719 0.77174 1.02067 0.91383 0.75440 0.87026 0.92175 0.73773 0.81125 0.80149 0.79610 0.91852 0.88171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -43.31 11.01 21.45 0.24 -43.07 16 2 C 0.03 1.51 5.39 84.65 0.46 1.97 16 3 Si 0.97 36.69 29.54 68.60 2.03 38.72 16 4 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.29 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.27 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.55 -24.86 8.70 25.60 0.22 -24.64 16 8 H 0.08 3.38 7.81 -2.91 -0.02 3.36 16 9 C 0.22 9.36 1.57 -11.29 -0.02 9.35 16 10 O -0.59 -28.34 13.53 -148.98 -2.02 -30.35 16 11 C 0.13 5.00 8.04 83.18 0.67 5.67 16 12 N -0.65 -23.20 3.69 -877.40 -3.24 -26.44 16 13 C 0.73 24.94 8.60 179.06 1.54 26.48 16 14 O -0.60 -22.93 14.29 -3.99 -0.06 -22.98 16 15 N -0.67 -18.05 5.32 -317.00 -1.69 -19.74 16 16 C 0.20 4.79 6.44 38.15 0.25 5.04 16 17 C -0.12 -2.60 8.72 22.38 0.20 -2.40 16 18 C -0.02 -0.37 9.55 22.26 0.21 -0.16 16 19 C -0.06 -1.18 6.85 36.39 0.25 -0.93 16 20 N 0.04 0.87 4.45 -46.42 -0.21 0.66 16 21 O -0.17 -4.19 18.44 18.88 0.35 -3.84 16 22 O -0.17 -4.28 18.44 18.89 0.35 -3.93 16 23 C -0.05 -0.94 9.53 22.29 0.21 -0.73 16 24 C 0.06 1.32 7.31 22.48 0.16 1.49 16 25 F -0.12 -2.59 16.81 44.97 0.76 -1.83 16 26 C 0.08 3.00 7.70 83.09 0.64 3.64 16 27 H 0.28 12.50 8.31 -92.71 -0.77 11.72 16 28 H 0.39 19.31 6.32 -74.06 -0.47 18.85 16 29 H 0.11 3.69 8.10 -2.39 -0.02 3.67 16 30 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.42 10.22 8.18 -92.71 -0.76 9.46 16 32 H 0.17 4.32 5.79 -2.91 -0.02 4.31 16 33 H 0.18 2.69 7.60 -2.91 -0.02 2.67 16 34 H 0.19 2.70 7.60 -2.91 -0.02 2.68 16 35 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.10 3.36 8.10 -2.39 -0.02 3.34 16 Total: -1.00 -53.55 329.34 1.26 -52.29 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: -0.04 Total: 35.75 kcal Atomic # 6 Polarization: 19.98 SS G_CDS: 4.79 Total: 24.77 kcal Atomic # 7 Polarization: -83.68 SS G_CDS: -4.90 Total: -88.58 kcal Atomic # 8 Polarization: -59.74 SS G_CDS: -1.38 Total: -61.11 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.76 Total: -1.83 kcal Atomic # 14 Polarization: 36.69 SS G_CDS: 2.03 Total: 38.72 kcal Total: -53.55 1.26 -52.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327729397.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.118 kcal (2) G-P(sol) polarization free energy of solvation -53.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds