Wall clock time and date at job start Tue Mar 31 2020 14:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99912 * 2 1 4 4 H 1.48493 * 109.47584 * 89.99583 * 3 2 1 5 5 H 1.48498 * 109.47030 * 210.00286 * 3 2 1 6 6 H 1.48510 * 109.46909 * 329.99850 * 3 2 1 7 7 C 1.37881 * 119.99839 * 180.26964 * 2 1 3 8 8 H 1.07996 * 119.99370 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00039 * 0.02562 * 7 2 1 10 10 S 1.81398 * 109.46848 * 179.97438 * 9 7 2 11 11 C 1.76206 * 103.00033 * 180.02562 * 10 9 7 12 12 C 1.38786 * 120.10209 * 359.97438 * 11 10 9 13 13 C 1.38197 * 119.98558 * 180.02562 * 12 11 10 14 14 C 1.38296 * 120.19973 * 0.02562 * 13 12 11 15 15 C 1.38247 * 120.21488 * 359.96008 * 14 13 12 16 16 C 1.38658 * 120.00427 * 359.76503 * 15 14 13 17 17 N 1.40137 * 120.09773 * 180.27642 * 16 15 14 18 18 C 1.34777 * 120.00105 * 24.81520 * 17 16 15 19 19 O 1.21300 * 120.00117 * 5.52760 * 18 17 16 20 20 C 1.50698 * 120.00120 * 185.52617 * 18 17 16 21 21 F 1.39903 * 110.75514 * 54.29824 * 20 18 17 22 22 C 1.55298 * 110.85119 * 177.77362 * 20 18 17 23 23 C 1.55205 * 100.83053 * 152.17936 * 22 20 18 24 24 O 1.43642 * 105.25925 * 323.81586 * 23 22 20 25 25 C 1.43242 * 109.97426 * 24.28212 * 24 23 22 26 26 H 0.96996 * 120.00412 * 359.72839 * 1 2 3 27 27 H 1.09001 * 109.47146 * 299.99537 * 9 7 2 28 28 H 1.08996 * 109.47026 * 59.99941 * 9 7 2 29 29 H 1.07994 * 120.00518 * 359.97438 * 12 11 10 30 30 H 1.08005 * 119.89803 * 180.02562 * 13 12 11 31 31 H 1.08007 * 119.89258 * 179.97438 * 14 13 12 32 32 H 1.07999 * 120.00194 * 179.97438 * 15 14 13 33 33 H 0.97000 * 119.99902 * 204.81651 * 17 16 15 34 34 H 1.09007 * 111.12487 * 270.24431 * 22 20 18 35 35 H 1.09004 * 111.12679 * 34.40169 * 22 20 18 36 36 H 1.09000 * 110.37215 * 204.80097 * 23 22 20 37 37 H 1.08997 * 110.21373 * 82.75310 * 23 22 20 38 38 H 1.08994 * 109.83328 * 238.77846 * 25 24 23 39 39 H 1.08996 * 109.90614 * 117.84443 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4465 2.6527 -0.7001 7 6 2.0046 -1.1941 -0.0056 8 1 3.0845 -1.1940 -0.0060 9 6 1.2510 -2.4991 -0.0123 10 16 2.4299 -3.8779 -0.0194 11 6 1.3825 -5.2948 -0.0275 12 6 0.0032 -5.1409 -0.0266 13 6 -0.8160 -6.2539 -0.0324 14 6 -0.2657 -7.5227 -0.0386 15 6 1.1072 -7.6856 -0.0398 16 6 1.9372 -6.5749 -0.0398 17 7 3.3291 -6.7377 -0.0469 18 6 3.8730 -7.8665 -0.5433 19 8 3.1667 -8.6973 -1.0747 20 6 5.3586 -8.0966 -0.4383 21 9 5.7856 -7.9811 0.8889 22 6 5.7464 -9.4811 -1.0252 23 6 7.2044 -9.2067 -1.4809 24 8 7.2025 -7.8521 -1.9588 25 6 6.1316 -7.1203 -1.3510 26 1 -0.4850 0.8400 0.0040 27 1 0.6241 -2.5613 0.8771 28 1 0.6248 -2.5525 -0.9028 29 1 -0.4298 -4.1516 -0.0205 30 1 -1.8892 -6.1325 -0.0321 31 1 -0.9105 -8.3891 -0.0427 32 1 1.5332 -8.6780 -0.0443 33 1 3.9010 -6.0380 0.3054 34 1 5.7100 -10.2564 -0.2598 35 1 5.1130 -9.7395 -1.8738 36 1 7.4866 -9.8900 -2.2819 37 1 7.8881 -9.3096 -0.6383 38 1 5.4669 -6.7294 -2.1213 39 1 6.5332 -6.2989 -0.7577 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342885773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:47 Heat of formation + Delta-G solvation = -100.812608 kcal Electronic energy + Delta-G solvation = -24767.595017 eV Core-core repulsion = 20908.851102 eV Total energy + Delta-G solvation = -3858.743915 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.36545 -40.76173 -39.25206 -38.12196 -34.97989 -33.32531 -32.30209 -30.86807 -30.35199 -28.97913 -28.66526 -24.53436 -23.51648 -23.05589 -22.81764 -21.70780 -20.34069 -18.65203 -17.73409 -17.39174 -16.89282 -16.38118 -16.26790 -15.72257 -15.25344 -15.21955 -15.12425 -14.97351 -14.44505 -14.34284 -13.93505 -13.60875 -13.45192 -13.10445 -13.08124 -12.56749 -12.43038 -12.34393 -12.17145 -11.99934 -11.85945 -11.38450 -11.28211 -10.99466 -10.82983 -10.60427 -10.18487 -10.03712 -9.87634 -9.76468 -9.33720 -9.25386 -8.70411 -8.16282 -6.71236 -6.33529 -4.39808 1.26987 1.56632 2.20750 2.23471 2.61540 3.18280 3.24733 3.27031 3.28495 3.43269 3.52257 3.83682 3.97540 4.17357 4.24148 4.33220 4.47411 4.75591 5.04301 5.13319 5.17759 5.22544 5.26013 5.29410 5.35589 5.44811 5.56167 5.64099 5.68976 6.05681 6.30099 6.40249 6.41082 6.55993 6.74685 6.86300 6.89426 7.13119 7.17713 7.58876 7.70135 7.80998 8.61105 9.24797 10.77548 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.013166 B = 0.003536 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.218657 B = 7916.125073 C = 9720.926309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.069 3.931 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.270 1.270 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.069 0.931 9 C 0.079 3.921 10 S -0.170 6.170 11 C -0.091 4.091 12 C -0.114 4.114 13 C -0.113 4.113 14 C -0.122 4.122 15 C -0.115 4.115 16 C 0.142 3.858 17 N -0.645 5.645 18 C 0.510 3.490 19 O -0.501 6.501 20 C 0.069 3.931 21 F -0.177 7.177 22 C -0.158 4.158 23 C 0.049 3.951 24 O -0.369 6.369 25 C 0.038 3.962 26 H 0.268 0.732 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.137 0.863 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.142 0.858 33 H 0.418 0.582 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.663 -17.810 -0.515 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.735 3.265 4 H -0.202 1.202 5 H -0.195 1.195 6 H -0.208 1.208 7 C -0.561 4.561 8 H 0.087 0.913 9 C -0.068 4.068 10 S 0.077 5.923 11 C -0.207 4.207 12 C -0.139 4.139 13 C -0.133 4.133 14 C -0.144 4.144 15 C -0.136 4.136 16 C 0.042 3.958 17 N -0.289 5.289 18 C 0.294 3.706 19 O -0.375 6.375 20 C 0.047 3.953 21 F -0.158 7.158 22 C -0.196 4.196 23 C -0.027 4.027 24 O -0.288 6.288 25 C -0.039 4.039 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.155 0.845 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.159 0.841 33 H 0.256 0.744 34 H 0.122 0.878 35 H 0.132 0.868 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.473 -18.003 -0.997 19.922 hybrid contribution -0.952 1.192 0.567 1.627 sum 7.520 -16.811 -0.430 18.421 Atomic orbital electron populations 1.69936 1.06163 1.27689 1.48773 1.24949 0.95006 0.99348 0.94273 0.86313 0.79740 0.81958 0.78458 1.20229 1.19456 1.20840 1.20598 0.93476 0.88464 1.53522 0.91305 1.21383 0.94043 0.90348 1.00992 1.85049 1.18467 0.98317 1.90510 1.21822 0.97582 0.95968 1.05289 1.21253 0.91448 1.00186 1.00994 1.21075 0.99653 0.92237 1.00369 1.20946 0.94263 0.97164 1.01978 1.21167 0.93188 0.98095 1.01182 1.17191 0.81668 0.92498 1.04444 1.43461 1.06389 1.19685 1.59372 1.20325 0.89094 0.82223 0.78917 1.90706 1.61183 1.44084 1.41560 1.22676 0.92085 1.00222 0.80355 1.92968 1.90649 1.97029 1.35124 1.23804 0.97740 0.94380 1.03671 1.23550 0.95332 0.83716 1.00105 1.88473 1.50569 1.22519 1.67258 1.23779 0.89609 0.94089 0.96417 0.92239 0.93639 0.93617 0.84511 0.85910 0.85951 0.84059 0.74429 0.87796 0.86824 0.88381 0.91219 0.88585 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.66 13.29 55.43 0.74 -23.92 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.91 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 7 C -0.52 -13.83 9.13 -34.44 -0.31 -14.15 16 8 H 0.07 1.81 7.71 -52.49 -0.40 1.40 16 9 C 0.08 1.92 4.09 36.00 0.15 2.07 16 10 S -0.17 -3.43 20.55 -107.50 -2.21 -5.64 16 11 C -0.09 -1.68 6.12 -38.90 -0.24 -1.92 16 12 C -0.11 -2.02 9.36 -39.39 -0.37 -2.39 16 13 C -0.11 -1.68 10.04 -39.58 -0.40 -2.08 16 14 C -0.12 -1.71 10.04 -39.56 -0.40 -2.11 16 15 C -0.11 -1.78 8.72 -39.42 -0.34 -2.13 16 16 C 0.14 2.36 6.44 -83.43 -0.54 1.83 16 17 N -0.65 -9.37 5.18 -9.71 -0.05 -9.42 16 18 C 0.51 6.85 6.58 -10.99 -0.07 6.78 16 19 O -0.50 -7.58 12.85 5.54 0.07 -7.51 16 20 C 0.07 0.75 1.45 -89.82 -0.13 0.62 16 21 F -0.18 -2.04 16.97 2.25 0.04 -2.00 16 22 C -0.16 -1.38 6.13 -24.34 -0.15 -1.53 16 23 C 0.05 0.39 7.78 38.33 0.30 0.69 16 24 O -0.37 -4.04 11.36 -35.23 -0.40 -4.44 16 25 C 0.04 0.40 7.22 37.89 0.27 0.68 16 26 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 27 H 0.05 1.15 7.75 -51.92 -0.40 0.75 16 28 H 0.05 1.16 7.75 -51.93 -0.40 0.76 16 29 H 0.14 2.58 5.88 -52.49 -0.31 2.27 16 30 H 0.12 1.52 8.06 -52.48 -0.42 1.09 16 31 H 0.12 1.37 8.06 -52.48 -0.42 0.94 16 32 H 0.14 2.13 5.79 -52.49 -0.30 1.83 16 33 H 0.42 5.73 7.64 -40.82 -0.31 5.41 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.11 1.04 7.34 -51.93 -0.38 0.66 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.10 1.02 7.81 -51.93 -0.41 0.61 16 39 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 LS Contribution 344.22 15.07 5.19 5.19 Total: -1.00 -29.38 344.22 -8.56 -37.94 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -4.59 Total: 6.27 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -2.33 Total: -11.90 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.69 Total: -33.34 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.33 Total: -11.96 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -2.21 Total: -5.64 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.38 -8.56 -37.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342885773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.870 kcal (2) G-P(sol) polarization free energy of solvation -29.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds