Wall clock time and date at job start Tue Mar 31 2020 14:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99912 * 2 1 4 4 H 1.48493 * 109.47584 * 89.99583 * 3 2 1 5 5 H 1.48498 * 109.47030 * 210.00286 * 3 2 1 6 6 H 1.48510 * 109.46909 * 329.99850 * 3 2 1 7 7 C 1.37881 * 119.99839 * 180.26964 * 2 1 3 8 8 H 1.07996 * 119.99370 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00039 * 0.02562 * 7 2 1 10 10 S 1.81398 * 109.46848 * 179.97438 * 9 7 2 11 11 C 1.76206 * 103.00033 * 180.02562 * 10 9 7 12 12 C 1.38786 * 120.10209 * 359.97438 * 11 10 9 13 13 C 1.38197 * 119.98558 * 180.02562 * 12 11 10 14 14 C 1.38296 * 120.19973 * 0.02562 * 13 12 11 15 15 C 1.38247 * 120.21488 * 359.96008 * 14 13 12 16 16 C 1.38658 * 120.00427 * 359.76503 * 15 14 13 17 17 N 1.40137 * 120.09773 * 180.27642 * 16 15 14 18 18 C 1.34777 * 120.00105 * 24.81520 * 17 16 15 19 19 O 1.21300 * 120.00117 * 5.52760 * 18 17 16 20 20 C 1.50698 * 120.00120 * 185.52617 * 18 17 16 21 21 F 1.39903 * 110.75514 * 54.29824 * 20 18 17 22 22 C 1.55298 * 110.85119 * 177.77362 * 20 18 17 23 23 C 1.55205 * 100.83053 * 152.17936 * 22 20 18 24 24 O 1.43642 * 105.25925 * 323.81586 * 23 22 20 25 25 C 1.43242 * 109.97426 * 24.28212 * 24 23 22 26 26 H 0.96996 * 120.00412 * 359.72839 * 1 2 3 27 27 H 1.09001 * 109.47146 * 299.99537 * 9 7 2 28 28 H 1.08996 * 109.47026 * 59.99941 * 9 7 2 29 29 H 1.07994 * 120.00518 * 359.97438 * 12 11 10 30 30 H 1.08005 * 119.89803 * 180.02562 * 13 12 11 31 31 H 1.08007 * 119.89258 * 179.97438 * 14 13 12 32 32 H 1.07999 * 120.00194 * 179.97438 * 15 14 13 33 33 H 0.97000 * 119.99902 * 204.81651 * 17 16 15 34 34 H 1.09007 * 111.12487 * 270.24431 * 22 20 18 35 35 H 1.09004 * 111.12679 * 34.40169 * 22 20 18 36 36 H 1.09000 * 110.37215 * 204.80097 * 23 22 20 37 37 H 1.08997 * 110.21373 * 82.75310 * 23 22 20 38 38 H 1.08994 * 109.83328 * 238.77846 * 25 24 23 39 39 H 1.08996 * 109.90614 * 117.84443 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4000 5 1 3.5467 1.4402 -0.7001 6 1 1.4465 2.6527 -0.7001 7 6 2.0046 -1.1941 -0.0056 8 1 3.0845 -1.1940 -0.0060 9 6 1.2510 -2.4991 -0.0123 10 16 2.4299 -3.8779 -0.0194 11 6 1.3825 -5.2948 -0.0275 12 6 0.0032 -5.1409 -0.0266 13 6 -0.8160 -6.2539 -0.0324 14 6 -0.2657 -7.5227 -0.0386 15 6 1.1072 -7.6856 -0.0398 16 6 1.9372 -6.5749 -0.0398 17 7 3.3291 -6.7377 -0.0469 18 6 3.8730 -7.8665 -0.5433 19 8 3.1667 -8.6973 -1.0747 20 6 5.3586 -8.0966 -0.4383 21 9 5.7856 -7.9811 0.8889 22 6 5.7464 -9.4811 -1.0252 23 6 7.2044 -9.2067 -1.4809 24 8 7.2025 -7.8521 -1.9588 25 6 6.1316 -7.1203 -1.3510 26 1 -0.4850 0.8400 0.0040 27 1 0.6241 -2.5613 0.8771 28 1 0.6248 -2.5525 -0.9028 29 1 -0.4298 -4.1516 -0.0205 30 1 -1.8892 -6.1325 -0.0321 31 1 -0.9105 -8.3891 -0.0427 32 1 1.5332 -8.6780 -0.0443 33 1 3.9010 -6.0380 0.3054 34 1 5.7100 -10.2564 -0.2598 35 1 5.1130 -9.7395 -1.8738 36 1 7.4866 -9.8900 -2.2819 37 1 7.8881 -9.3096 -0.6383 38 1 5.4669 -6.7294 -2.1213 39 1 6.5332 -6.2989 -0.7577 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342885773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:46 Heat of formation + Delta-G solvation = -117.780567 kcal Electronic energy + Delta-G solvation = -24768.330803 eV Core-core repulsion = 20908.851102 eV Total energy + Delta-G solvation = -3859.479700 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.26273 -41.88217 -40.16607 -39.25208 -36.17390 -35.34472 -33.15324 -32.20325 -31.30161 -30.65199 -29.97238 -25.73647 -25.17792 -24.17190 -23.86445 -22.83481 -21.40993 -19.78812 -19.02641 -18.44472 -18.19513 -17.98127 -17.25050 -16.83904 -16.61830 -16.25996 -16.10531 -16.08820 -15.84703 -15.43674 -14.97397 -14.92517 -14.72956 -14.71404 -14.29468 -14.20341 -13.94935 -13.50510 -13.16223 -12.89256 -12.80857 -12.76224 -12.65720 -12.55346 -12.13420 -11.97380 -11.69630 -11.64561 -11.08397 -11.02040 -10.87323 -10.73427 -10.56765 -9.43172 -8.37308 -8.26731 -6.51650 0.04309 0.26075 0.69951 1.08860 1.40778 1.41180 1.51346 1.53178 1.75449 2.34398 2.50197 2.59998 2.71545 2.98415 2.99505 3.22912 3.51103 3.79231 3.81852 4.08704 4.09779 4.27757 4.38407 4.40277 4.42240 4.51115 4.65920 4.72981 4.78116 4.84006 4.87311 4.91309 5.04878 5.17822 5.33943 5.48959 5.52712 5.68523 5.79616 5.91349 6.01925 6.55354 6.56897 7.17458 8.74660 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.013166 B = 0.003536 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.218657 B = 7916.125073 C = 9720.926309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.976 3.024 4 H -0.269 1.269 5 H -0.263 1.263 6 H -0.277 1.277 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.084 3.916 10 S -0.157 6.157 11 C -0.118 4.118 12 C -0.131 4.131 13 C -0.111 4.111 14 C -0.104 4.104 15 C -0.122 4.122 16 C 0.141 3.859 17 N -0.648 5.648 18 C 0.512 3.488 19 O -0.516 6.516 20 C 0.072 3.928 21 F -0.180 7.180 22 C -0.153 4.153 23 C 0.047 3.953 24 O -0.386 6.386 25 C 0.039 3.961 26 H 0.272 0.728 27 H 0.023 0.977 28 H 0.022 0.978 29 H 0.115 0.885 30 H 0.151 0.849 31 H 0.162 0.838 32 H 0.150 0.850 33 H 0.420 0.580 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.120 0.880 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.485 -19.466 -0.529 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.188 1.188 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.086 0.914 9 C -0.064 4.064 10 S 0.088 5.912 11 C -0.233 4.233 12 C -0.155 4.155 13 C -0.131 4.131 14 C -0.125 4.125 15 C -0.143 4.143 16 C 0.041 3.959 17 N -0.292 5.292 18 C 0.298 3.702 19 O -0.392 6.392 20 C 0.050 3.950 21 F -0.160 7.160 22 C -0.191 4.191 23 C -0.029 4.029 24 O -0.306 6.306 25 C -0.039 4.039 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.133 0.867 30 H 0.169 0.831 31 H 0.180 0.820 32 H 0.167 0.833 33 H 0.258 0.742 34 H 0.138 0.862 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.303 -19.692 -1.009 21.802 hybrid contribution -1.262 1.517 0.567 2.053 sum 8.041 -18.175 -0.442 19.879 Atomic orbital electron populations 1.70045 1.07685 1.28746 1.49459 1.25879 0.95852 1.02974 0.93563 0.85274 0.78543 0.77451 0.78804 1.19387 1.18757 1.20221 1.20947 0.93658 0.89795 1.53685 0.91382 1.21002 0.94482 0.92144 0.98746 1.84654 1.17272 0.97681 1.91567 1.21798 0.97679 0.95605 1.08223 1.21248 0.91738 1.00388 1.02126 1.21371 1.00832 0.91602 0.99318 1.21398 0.94140 0.98008 0.98945 1.21414 0.93879 0.97899 1.01123 1.17351 0.82851 0.92037 1.03706 1.43548 1.05741 1.20308 1.59640 1.20761 0.90140 0.81365 0.77952 1.90686 1.61955 1.44419 1.42100 1.22684 0.90057 1.01904 0.80350 1.92965 1.90468 1.97163 1.35434 1.23853 0.98063 0.93342 1.03817 1.23774 0.94970 0.82728 1.01401 1.88455 1.50526 1.23934 1.67662 1.23764 0.89610 0.94251 0.96260 0.91948 0.95831 0.95977 0.86724 0.83084 0.82027 0.83262 0.74225 0.86200 0.87175 0.86169 0.90049 0.89093 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.54 13.29 21.45 0.28 -52.26 16 2 C 0.02 1.03 5.46 84.65 0.46 1.50 16 3 Si 0.98 42.18 29.54 68.60 2.03 44.21 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.54 -29.66 9.13 25.60 0.23 -29.42 16 8 H 0.07 3.64 7.71 -2.91 -0.02 3.62 16 9 C 0.08 4.29 4.09 71.24 0.29 4.58 16 10 S -0.16 -6.55 20.55 -56.49 -1.16 -7.71 16 11 C -0.12 -4.42 6.12 22.71 0.14 -4.28 16 12 C -0.13 -4.73 9.36 22.39 0.21 -4.52 16 13 C -0.11 -3.14 10.04 22.27 0.22 -2.91 16 14 C -0.10 -2.63 10.04 22.29 0.22 -2.40 16 15 C -0.12 -3.55 8.72 22.37 0.20 -3.35 16 16 C 0.14 4.62 6.44 38.22 0.25 4.87 16 17 N -0.65 -18.57 5.18 -303.00 -1.57 -20.14 16 18 C 0.51 13.23 6.58 87.66 0.58 13.80 16 19 O -0.52 -14.90 12.85 -3.09 -0.04 -14.94 16 20 C 0.07 1.47 1.45 -10.28 -0.01 1.45 16 21 F -0.18 -3.88 16.97 44.97 0.76 -3.12 16 22 C -0.15 -2.35 6.13 32.14 0.20 -2.16 16 23 C 0.05 0.64 7.78 72.74 0.57 1.21 16 24 O -0.39 -7.88 11.36 -148.98 -1.69 -9.57 16 25 C 0.04 0.78 7.22 72.45 0.52 1.30 16 26 H 0.27 14.47 8.31 -92.71 -0.77 13.69 16 27 H 0.02 1.27 7.75 -2.39 -0.02 1.26 16 28 H 0.02 1.20 7.75 -2.39 -0.02 1.18 16 29 H 0.11 4.62 5.88 -2.91 -0.02 4.60 16 30 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 31 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 32 H 0.15 4.17 5.79 -2.91 -0.02 4.15 16 33 H 0.42 11.51 7.64 -92.71 -0.71 10.80 16 34 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.11 1.81 7.34 -2.38 -0.02 1.79 16 36 H 0.12 1.11 8.14 -2.39 -0.02 1.10 16 37 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 38 H 0.09 1.89 7.81 -2.39 -0.02 1.88 16 39 H 0.10 1.91 8.11 -2.39 -0.02 1.90 16 Total: -1.00 -64.19 344.22 3.07 -61.11 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.39 Total: 22.76 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 4.07 Total: -20.35 kcal Atomic # 7 Polarization: -71.11 SS G_CDS: -1.28 Total: -72.40 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -1.73 Total: -24.51 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.76 Total: -3.12 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Atomic # 16 Polarization: -6.55 SS G_CDS: -1.16 Total: -7.71 kcal Total: -64.19 3.07 -61.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342885773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.666 kcal (2) G-P(sol) polarization free energy of solvation -64.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds