Wall clock time and date at job start Tue Mar 31 2020 14:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99784 * 2 1 4 4 H 1.48502 * 109.46975 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47388 * 300.00371 * 3 2 1 6 6 H 1.48494 * 109.47150 * 60.00637 * 3 2 1 7 7 C 1.37872 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00047 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00224 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47111 * 180.02562 * 9 7 2 11 11 C 1.34973 * 125.97661 * 125.00210 * 10 9 7 12 12 C 1.35236 * 107.86228 * 180.29811 * 11 10 9 13 13 C 1.40408 * 107.86661 * 359.58257 * 12 11 10 14 14 N 1.40166 * 125.97282 * 180.13023 * 13 12 11 15 15 C 1.34780 * 119.99616 * 0.31981 * 14 13 12 16 16 O 1.21291 * 120.00105 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99514 * 179.97438 * 15 14 13 18 18 C 1.52994 * 109.47018 * 179.97438 * 17 15 14 19 19 H 1.09005 * 109.40839 * 53.39966 * 18 17 15 20 20 C 1.49581 * 109.41345 * 293.54706 * 18 17 15 21 21 C 1.30335 * 119.15421 * 221.27472 * 20 18 17 22 22 S 1.77799 * 107.56533 * 0.32549 * 21 20 18 23 23 O 1.42094 * 105.57090 * 129.09909 * 22 21 20 24 24 O 1.42099 * 105.57434 * 259.56442 * 22 21 20 25 25 C 1.54941 * 109.41707 * 173.20125 * 18 17 15 26 26 N 1.31214 * 108.05529 * 0.42315 * 13 12 11 27 27 H 0.96993 * 120.00054 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46732 * 59.99822 * 9 7 2 29 29 H 1.08996 * 109.46807 * 300.00172 * 9 7 2 30 30 H 1.08002 * 126.06428 * 0.02848 * 11 10 9 31 31 H 1.07996 * 126.06668 * 179.71227 * 12 11 10 32 32 H 0.96997 * 119.99865 * 180.31674 * 14 13 12 33 33 H 1.08999 * 109.46934 * 299.99884 * 17 15 14 34 34 H 1.09005 * 109.47012 * 59.99761 * 17 15 14 35 35 H 1.07990 * 120.42300 * 41.29516 * 20 18 17 36 36 H 1.08001 * 126.21382 * 180.34856 * 21 20 18 37 37 H 1.09000 * 111.33929 * 262.83061 * 25 18 17 38 38 H 1.09005 * 111.33155 * 27.54094 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.2421 -4.6224 0.8942 12 6 3.2649 -5.4391 0.5536 13 6 3.8697 -4.9140 -0.5996 14 7 4.9666 -5.4639 -1.2772 15 6 5.5316 -6.6035 -0.8315 16 8 5.0912 -7.1529 0.1561 17 6 6.7106 -7.1951 -1.5603 18 6 7.1568 -8.4763 -0.8531 19 1 6.3035 -9.1459 -0.7444 20 6 7.6966 -8.1354 0.4996 21 6 8.7682 -8.7418 0.9269 22 16 9.2918 -9.8669 -0.3464 23 8 10.6706 -9.5930 -0.5541 24 8 8.8315 -11.1474 0.0630 25 6 8.2538 -9.1744 -1.6956 26 7 3.2325 -3.8151 -0.9286 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 1.5775 -4.7526 1.7355 31 1 3.5623 -6.3369 1.0749 32 1 5.3190 -5.0243 -2.0667 33 1 6.4246 -7.4266 -2.5862 34 1 7.5318 -6.4782 -1.5650 35 1 7.2045 -7.3965 1.1145 36 1 9.2503 -8.5889 1.8812 37 1 7.8334 -9.9644 -2.3179 38 1 8.8112 -8.4547 -2.2953 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361361058.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:10 Heat of formation + Delta-G solvation = 6.623549 kcal Electronic energy + Delta-G solvation = -24084.474916 eV Core-core repulsion = 20250.309745 eV Total energy + Delta-G solvation = -3834.165172 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.93305 -39.84814 -37.76099 -37.35231 -36.25230 -34.91525 -33.46548 -32.15310 -31.03888 -29.46711 -29.03006 -26.70535 -24.33897 -23.06559 -21.82050 -20.87045 -20.25436 -19.75926 -19.14247 -17.58741 -17.31165 -16.75067 -16.61477 -16.57817 -15.96623 -15.48932 -15.42957 -14.96934 -14.60859 -14.27898 -14.16196 -13.85977 -13.32604 -13.19514 -12.85617 -12.81003 -12.49937 -12.43423 -12.37662 -12.34735 -12.05824 -11.84298 -11.15321 -11.09609 -10.95728 -10.84356 -10.56678 -10.49216 -10.33449 -10.13858 -9.75335 -9.57248 -8.70664 -8.26508 -7.60460 -6.31304 -4.36672 -0.33715 1.01129 2.09356 2.23068 2.58716 2.79798 3.15799 3.17213 3.25046 3.30814 3.51689 3.56832 3.72621 3.77656 3.89541 4.25834 4.28549 4.45582 4.60075 4.71841 4.88216 5.02055 5.04110 5.20499 5.29116 5.37482 5.44802 5.67680 5.77191 6.11916 6.35625 6.45401 6.76468 6.96626 7.25448 7.41386 7.63092 7.79925 7.93556 8.02078 8.51280 8.72386 9.29390 10.77556 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.030868 B = 0.002117 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.865819 B =13223.892071 C =13601.774547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.529 4.529 8 H 0.069 0.931 9 C 0.257 3.743 10 N -0.317 5.317 11 C 0.052 3.948 12 C -0.287 4.287 13 C 0.252 3.748 14 N -0.628 5.628 15 C 0.515 3.485 16 O -0.517 6.517 17 C -0.127 4.127 18 C -0.070 4.070 19 H 0.132 0.868 20 C -0.032 4.032 21 C -0.674 4.674 22 S 2.445 3.555 23 O -0.937 6.937 24 O -0.932 6.932 25 C -0.577 4.577 26 N -0.302 5.302 27 H 0.267 0.733 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.168 0.832 31 H 0.160 0.840 32 H 0.412 0.588 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.148 0.852 36 H 0.182 0.818 37 H 0.151 0.849 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.711 -17.245 -4.194 23.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.567 4.567 8 H 0.087 0.913 9 C 0.140 3.860 10 N -0.099 5.099 11 C -0.098 4.098 12 C -0.319 4.319 13 C -0.001 4.001 14 N -0.275 5.275 15 C 0.301 3.699 16 O -0.392 6.392 17 C -0.167 4.167 18 C -0.090 4.090 19 H 0.150 0.850 20 C -0.052 4.052 21 C -0.782 4.782 22 S 2.626 3.374 23 O -0.934 6.934 24 O -0.929 6.929 25 C -0.707 4.707 26 N -0.133 5.133 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.186 0.814 31 H 0.177 0.823 32 H 0.248 0.752 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.165 0.835 36 H 0.199 0.801 37 H 0.169 0.831 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 14.727 -17.202 -4.265 23.043 hybrid contribution -0.218 1.483 0.369 1.544 sum 14.509 -15.719 -3.896 21.744 Atomic orbital electron populations 1.69922 1.06053 1.27615 1.49665 1.24953 0.95001 0.99611 0.94550 0.86264 0.80008 0.82400 0.77777 1.19580 1.20657 1.20720 1.21273 0.93986 0.89322 1.52165 0.91275 1.19780 0.85603 0.81282 0.99353 1.49118 1.23050 1.19624 1.18087 1.22593 1.00237 0.90242 0.96759 1.21506 1.02083 1.06617 1.01652 1.19112 0.91627 0.94539 0.94808 1.42458 1.29705 1.24938 1.30397 1.20517 0.84346 0.79964 0.85099 1.90676 1.62735 1.60109 1.25648 1.21674 0.97236 0.96702 1.01104 1.20583 0.99281 0.98505 0.90605 0.85003 1.23179 0.92180 0.94936 0.94903 1.32653 1.08768 1.17880 1.18867 1.07253 0.75787 0.75992 0.78335 1.93610 1.29299 1.85360 1.85167 1.93653 1.82392 1.37049 1.79774 1.30711 1.12117 1.12895 1.14942 1.77334 1.03597 1.16128 1.16265 0.92311 0.93651 0.92472 0.81429 0.82251 0.75225 0.86721 0.87356 0.83482 0.80053 0.83074 0.83200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.31 9.24 -34.44 -0.32 -14.63 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.26 6.32 6.26 -5.19 -0.03 6.29 16 10 N -0.32 -7.03 3.67 -62.56 -0.23 -7.26 16 11 C 0.05 0.98 11.43 -17.24 -0.20 0.78 16 12 C -0.29 -5.23 9.61 -39.83 -0.38 -5.61 16 13 C 0.25 4.58 8.11 -154.39 -1.25 3.33 16 14 N -0.63 -7.95 5.45 -11.13 -0.06 -8.02 16 15 C 0.52 5.45 7.46 -10.98 -0.08 5.37 16 16 O -0.52 -7.04 11.60 5.55 0.06 -6.98 16 17 C -0.13 -0.65 5.02 -27.89 -0.14 -0.79 16 18 C -0.07 -0.39 2.33 -91.29 -0.21 -0.60 16 19 H 0.13 0.75 7.90 -51.93 -0.41 0.34 16 20 C -0.03 -0.24 8.65 -36.38 -0.31 -0.56 16 21 C -0.67 -5.08 11.04 29.20 0.32 -4.75 16 22 S 2.44 17.25 6.19 -107.50 -0.67 16.58 16 23 O -0.94 -9.71 18.01 -57.37 -1.03 -10.74 16 24 O -0.93 -10.01 18.02 -57.37 -1.03 -11.04 16 25 C -0.58 -1.77 7.22 38.18 0.28 -1.50 16 26 N -0.30 -6.54 12.42 31.44 0.39 -6.15 16 27 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.06 1.38 8.07 -51.93 -0.42 0.96 16 30 H 0.17 2.57 8.06 -52.49 -0.42 2.15 16 31 H 0.16 2.76 5.92 -52.49 -0.31 2.45 16 32 H 0.41 3.99 8.82 -40.82 -0.36 3.63 16 33 H 0.11 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.15 1.30 6.90 -52.49 -0.36 0.94 16 36 H 0.18 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.15 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.15 0.13 7.92 -51.93 -0.41 -0.28 16 LS Contribution 341.65 15.07 5.15 5.15 Total: -1.00 -37.61 341.65 -8.49 -46.10 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -4.35 Total: 1.67 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -2.43 Total: -11.11 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: 0.84 Total: -45.46 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -2.00 Total: -28.76 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 17.25 SS G_CDS: -0.67 Total: 16.58 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -37.61 -8.49 -46.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361361058.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.720 kcal (2) G-P(sol) polarization free energy of solvation -37.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds