Wall clock time and date at job start Tue Mar 31 2020 14:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99784 * 2 1 4 4 H 1.48502 * 109.46975 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47388 * 300.00371 * 3 2 1 6 6 H 1.48494 * 109.47150 * 60.00637 * 3 2 1 7 7 C 1.37872 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00047 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00224 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47111 * 180.02562 * 9 7 2 11 11 C 1.34973 * 125.97661 * 125.00210 * 10 9 7 12 12 C 1.35236 * 107.86228 * 180.29811 * 11 10 9 13 13 C 1.40408 * 107.86661 * 359.58257 * 12 11 10 14 14 N 1.40166 * 125.97282 * 180.13023 * 13 12 11 15 15 C 1.34780 * 119.99616 * 0.31981 * 14 13 12 16 16 O 1.21291 * 120.00105 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99514 * 179.97438 * 15 14 13 18 18 C 1.52994 * 109.47018 * 179.97438 * 17 15 14 19 19 H 1.09005 * 109.40839 * 53.39966 * 18 17 15 20 20 C 1.49581 * 109.41345 * 293.54706 * 18 17 15 21 21 C 1.30335 * 119.15421 * 221.27472 * 20 18 17 22 22 S 1.77799 * 107.56533 * 0.32549 * 21 20 18 23 23 O 1.42094 * 105.57090 * 129.09909 * 22 21 20 24 24 O 1.42099 * 105.57434 * 259.56442 * 22 21 20 25 25 C 1.54941 * 109.41707 * 173.20125 * 18 17 15 26 26 N 1.31214 * 108.05529 * 0.42315 * 13 12 11 27 27 H 0.96993 * 120.00054 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46732 * 59.99822 * 9 7 2 29 29 H 1.08996 * 109.46807 * 300.00172 * 9 7 2 30 30 H 1.08002 * 126.06428 * 0.02848 * 11 10 9 31 31 H 1.07996 * 126.06668 * 179.71227 * 12 11 10 32 32 H 0.96997 * 119.99865 * 180.31674 * 14 13 12 33 33 H 1.08999 * 109.46934 * 299.99884 * 17 15 14 34 34 H 1.09005 * 109.47012 * 59.99761 * 17 15 14 35 35 H 1.07990 * 120.42300 * 41.29516 * 20 18 17 36 36 H 1.08001 * 126.21382 * 180.34856 * 21 20 18 37 37 H 1.09000 * 111.33929 * 262.83061 * 25 18 17 38 38 H 1.09005 * 111.33155 * 27.54094 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.2421 -4.6224 0.8942 12 6 3.2649 -5.4391 0.5536 13 6 3.8697 -4.9140 -0.5996 14 7 4.9666 -5.4639 -1.2772 15 6 5.5316 -6.6035 -0.8315 16 8 5.0912 -7.1529 0.1561 17 6 6.7106 -7.1951 -1.5603 18 6 7.1568 -8.4763 -0.8531 19 1 6.3035 -9.1459 -0.7444 20 6 7.6966 -8.1354 0.4996 21 6 8.7682 -8.7418 0.9269 22 16 9.2918 -9.8669 -0.3464 23 8 10.6706 -9.5930 -0.5541 24 8 8.8315 -11.1474 0.0630 25 6 8.2538 -9.1744 -1.6956 26 7 3.2325 -3.8151 -0.9286 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 1.5775 -4.7526 1.7355 31 1 3.5623 -6.3369 1.0749 32 1 5.3190 -5.0243 -2.0667 33 1 6.4246 -7.4266 -2.5862 34 1 7.5318 -6.4782 -1.5650 35 1 7.2045 -7.3965 1.1145 36 1 9.2503 -8.5889 1.8812 37 1 7.8334 -9.9644 -2.3179 38 1 8.8112 -8.4547 -2.2953 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361361058.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:09 Heat of formation + Delta-G solvation = -22.579715 kcal Electronic energy + Delta-G solvation = -24085.741265 eV Core-core repulsion = 20250.309745 eV Total energy + Delta-G solvation = -3835.431520 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.22052 -40.87013 -38.41259 -38.01033 -36.91601 -36.16982 -35.26531 -33.08142 -32.32682 -30.95466 -29.67878 -28.38587 -25.34423 -24.45699 -22.84626 -21.96413 -21.23268 -20.85260 -19.76748 -18.70424 -18.32484 -18.12881 -17.83119 -17.27975 -16.95838 -16.65686 -16.31018 -16.10368 -15.73513 -15.56604 -15.11492 -14.70944 -14.45706 -14.27038 -13.84385 -13.80333 -13.64086 -13.51840 -13.33309 -13.07252 -13.06354 -12.92367 -12.73939 -12.44417 -12.31664 -12.04337 -11.65872 -11.62756 -11.40817 -11.37375 -11.03631 -10.78914 -10.72967 -9.74858 -9.11269 -8.34341 -6.48512 -0.83799 0.43668 0.97030 1.36732 1.36830 1.39947 1.48735 1.52153 1.73634 2.26312 2.30098 2.43274 2.68112 2.97599 3.12045 3.32259 3.38915 3.74672 3.80903 4.03597 4.21914 4.29130 4.43439 4.57350 4.64886 4.76307 4.83657 4.84478 4.89904 4.90748 4.93582 5.02292 5.16829 5.27194 5.55629 5.78912 5.96613 6.25397 6.32166 6.63980 7.02123 7.17813 7.21771 8.73467 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.030868 B = 0.002117 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.865819 B =13223.892071 C =13601.774547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.272 3.728 10 N -0.346 5.346 11 C 0.051 3.949 12 C -0.292 4.292 13 C 0.264 3.736 14 N -0.624 5.624 15 C 0.513 3.487 16 O -0.549 6.549 17 C -0.116 4.116 18 C -0.076 4.076 19 H 0.134 0.866 20 C -0.035 4.035 21 C -0.689 4.689 22 S 2.446 3.554 23 O -0.977 6.977 24 O -0.978 6.978 25 C -0.531 4.531 26 N -0.347 5.347 27 H 0.272 0.728 28 H 0.021 0.979 29 H 0.056 0.944 30 H 0.197 0.803 31 H 0.170 0.830 32 H 0.427 0.573 33 H 0.158 0.842 34 H 0.139 0.861 35 H 0.130 0.870 36 H 0.176 0.824 37 H 0.188 0.812 38 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.878 -17.419 -5.996 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.071 0.929 9 C 0.153 3.847 10 N -0.128 5.128 11 C -0.098 4.098 12 C -0.323 4.323 13 C 0.010 3.990 14 N -0.274 5.274 15 C 0.301 3.699 16 O -0.425 6.425 17 C -0.156 4.156 18 C -0.096 4.096 19 H 0.152 0.848 20 C -0.055 4.055 21 C -0.796 4.796 22 S 2.632 3.368 23 O -0.975 6.975 24 O -0.975 6.975 25 C -0.665 4.665 26 N -0.178 5.178 27 H 0.082 0.918 28 H 0.039 0.961 29 H 0.074 0.926 30 H 0.213 0.787 31 H 0.188 0.812 32 H 0.265 0.735 33 H 0.176 0.824 34 H 0.157 0.843 35 H 0.148 0.852 36 H 0.193 0.807 37 H 0.206 0.794 38 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 15.949 -17.423 -6.041 24.381 hybrid contribution -0.568 1.429 0.940 1.803 sum 15.381 -15.993 -5.101 22.768 Atomic orbital electron populations 1.69999 1.07240 1.28724 1.50025 1.25754 0.95848 1.02796 0.93929 0.85285 0.78430 0.78336 0.78268 1.19791 1.19828 1.19669 1.21414 0.93354 0.90909 1.52673 0.92913 1.19320 0.85727 0.81610 0.98008 1.48826 1.23938 1.20239 1.19799 1.23179 1.00676 0.89161 0.96741 1.21734 1.01941 1.06768 1.01882 1.19530 0.91945 0.93112 0.94458 1.42723 1.28313 1.25632 1.30758 1.21659 0.84862 0.78637 0.84692 1.90662 1.63869 1.60697 1.27278 1.21845 0.95277 0.96441 1.02027 1.20697 0.99949 0.99161 0.89777 0.84840 1.23281 0.91709 0.94371 0.96139 1.32723 1.09250 1.18279 1.19314 1.07079 0.75443 0.75088 0.79194 1.93555 1.32367 1.85609 1.85926 1.93593 1.82829 1.39722 1.81359 1.30605 1.09407 1.13910 1.12530 1.77245 1.04732 1.18314 1.17464 0.91847 0.96076 0.92608 0.78658 0.81245 0.73457 0.82423 0.84326 0.85207 0.80650 0.79445 0.79444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.42 13.29 21.45 0.28 -51.14 16 2 C 0.02 0.92 5.46 84.65 0.46 1.39 16 3 Si 0.97 42.70 29.54 68.60 2.03 44.73 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.55 -30.11 9.24 25.60 0.24 -29.88 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 9 C 0.27 13.81 6.26 85.64 0.54 14.34 16 10 N -0.35 -15.65 3.67 -351.84 -1.29 -16.94 16 11 C 0.05 1.91 11.43 83.52 0.96 2.87 16 12 C -0.29 -10.44 9.61 22.11 0.21 -10.23 16 13 C 0.26 9.40 8.11 133.32 1.08 10.48 16 14 N -0.62 -14.34 5.45 -307.50 -1.68 -16.02 16 15 C 0.51 9.28 7.46 87.66 0.65 9.94 16 16 O -0.55 -13.94 11.60 -3.06 -0.04 -13.98 16 17 C -0.12 -0.58 5.02 29.85 0.15 -0.43 16 18 C -0.08 -0.54 2.33 -11.23 -0.03 -0.56 16 19 H 0.13 1.03 7.90 -2.38 -0.02 1.01 16 20 C -0.03 -0.47 8.65 25.99 0.22 -0.25 16 21 C -0.69 -10.15 11.04 68.47 0.76 -9.40 16 22 S 2.45 31.50 6.19 -56.49 -0.35 31.15 16 23 O -0.98 -19.69 18.01 -127.81 -2.30 -21.99 16 24 O -0.98 -20.90 18.02 -127.81 -2.30 -23.21 16 25 C -0.53 -0.52 7.22 72.65 0.52 0.00 16 26 N -0.35 -15.12 12.42 -54.45 -0.68 -15.79 16 27 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 28 H 0.02 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.06 2.78 8.07 -2.39 -0.02 2.76 16 30 H 0.20 5.87 8.06 -2.91 -0.02 5.85 16 31 H 0.17 5.71 5.92 -2.91 -0.02 5.69 16 32 H 0.43 7.03 8.82 -92.71 -0.82 6.21 16 33 H 0.16 -0.39 8.14 -2.39 -0.02 -0.40 16 34 H 0.14 0.01 8.14 -2.38 -0.02 0.00 16 35 H 0.13 2.22 6.90 -2.92 -0.02 2.20 16 36 H 0.18 2.62 8.06 -2.91 -0.02 2.59 16 37 H 0.19 -0.93 8.14 -2.39 -0.02 -0.95 16 38 H 0.19 -1.02 7.92 -2.38 -0.02 -1.04 16 Total: -1.00 -86.02 341.65 -0.26 -86.29 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 0.29 Total: 8.62 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 5.77 Total: -11.72 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -3.36 Total: -99.89 kcal Atomic # 8 Polarization: -54.54 SS G_CDS: -4.64 Total: -59.18 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 31.50 SS G_CDS: -0.35 Total: 31.15 kcal Total: -86.02 -0.26 -86.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361361058.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.708 kcal (2) G-P(sol) polarization free energy of solvation -86.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds