Wall clock time and date at job start Tue Mar 31 2020 14:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86800 * 119.99952 * 2 1 4 4 H 1.48497 * 109.47400 * 274.98762 * 3 2 1 5 5 H 1.48500 * 109.46909 * 34.99089 * 3 2 1 6 6 H 1.48501 * 109.46926 * 154.98660 * 3 2 1 7 7 C 1.39911 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99714 * 147.53947 * 7 2 1 9 9 C 1.41136 * 120.00223 * 327.53118 * 7 2 1 10 10 C 1.40873 * 120.16037 * 157.96522 * 9 7 2 11 11 C 1.36361 * 119.83289 * 180.02562 * 10 9 7 12 12 C 1.39508 * 120.16280 * 0.02562 * 11 10 9 13 13 N 1.39133 * 119.83664 * 180.02562 * 12 11 10 14 14 C 1.34769 * 119.99692 * 37.85493 * 13 12 11 15 15 O 1.21596 * 120.00451 * 356.67091 * 14 13 12 16 16 C 1.47525 * 119.99911 * 176.67750 * 14 13 12 17 17 C 1.39420 * 120.16959 * 359.97438 * 16 14 13 18 18 C 1.38473 * 120.48419 * 179.97438 * 17 16 14 19 19 F 1.35102 * 119.78516 * 180.27879 * 18 17 16 20 20 C 1.38186 * 120.42343 * 0.02562 * 18 17 16 21 21 C 1.39378 * 119.92287 * 359.97438 * 20 18 17 22 22 C 1.46850 * 134.25988 * 179.97438 * 21 20 18 23 23 C 1.33972 * 106.14753 * 180.02562 * 22 21 20 24 24 O 1.34463 * 110.12778 * 0.02562 * 23 22 21 25 25 C 1.34617 * 110.91989 * 359.97438 * 24 23 22 26 26 C 1.39516 * 120.33129 * 0.27385 * 12 11 10 27 27 C 1.36359 * 120.16126 * 359.44447 * 26 12 11 28 28 H 0.97003 * 120.00139 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.08565 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.92023 * 179.97438 * 11 10 9 31 31 H 0.96997 * 119.99877 * 217.84971 * 13 12 11 32 32 H 1.08002 * 119.76030 * 0.03014 * 17 16 14 33 33 H 1.08001 * 120.03792 * 180.02562 * 20 18 17 34 34 H 1.07995 * 126.92281 * 0.06538 * 22 21 20 35 35 H 1.08007 * 124.93868 * 180.02562 * 23 22 21 36 36 H 1.07998 * 119.91805 * 179.73207 * 26 12 11 37 37 H 1.08004 * 120.07982 * 180.25641 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3848 2.1073 -1.3947 5 1 1.4968 2.6199 0.8029 6 1 3.5890 1.4120 0.5920 7 6 2.0082 -1.2117 -0.0005 8 1 2.9616 -1.2845 -0.5026 9 6 1.4680 -2.3387 0.6551 10 6 1.8860 -3.6349 0.2950 11 6 1.3593 -4.7192 0.9325 12 6 0.4083 -4.5472 1.9387 13 7 -0.1242 -5.6582 2.5850 14 6 0.6625 -6.7158 2.8658 15 8 1.8224 -6.7247 2.5008 16 6 0.1165 -7.8628 3.6158 17 6 -1.2127 -7.8563 4.0363 18 6 -1.7321 -8.9297 4.7402 19 9 -3.0237 -8.9109 5.1360 20 6 -0.9393 -10.0222 5.0359 21 6 0.3920 -10.0469 4.6238 22 6 1.4891 -11.0135 4.7599 23 6 2.5470 -10.4651 4.1475 24 8 2.2192 -9.2606 3.6477 25 6 0.9320 -8.9657 3.9094 26 6 -0.0151 -3.2669 2.2965 27 6 0.5069 -2.1730 1.6718 28 1 -0.4850 0.8401 0.0004 29 1 2.6218 -3.7696 -0.4841 30 1 1.6784 -5.7135 0.6572 31 1 -1.0617 -5.6715 2.8336 32 1 -1.8422 -7.0082 3.8106 33 1 -1.3509 -10.8562 5.5849 34 1 1.4507 -11.9733 5.2534 35 1 3.5215 -10.9237 4.0670 36 1 -0.7548 -3.1417 3.0734 37 1 0.1812 -1.1823 1.9527 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523228172.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:42 Heat of formation + Delta-G solvation = -38.696311 kcal Electronic energy + Delta-G solvation = -25445.840807 eV Core-core repulsion = 21454.346506 eV Total energy + Delta-G solvation = -3991.494301 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.97811 -43.60024 -41.30491 -39.25248 -38.38518 -36.27770 -34.95030 -33.94840 -31.70556 -31.46582 -30.77105 -30.31678 -27.13876 -25.43525 -23.65251 -23.58239 -23.03536 -22.26908 -21.30059 -19.45493 -19.24437 -18.94484 -18.28347 -17.78602 -17.38107 -17.22001 -17.03290 -16.53311 -16.13667 -16.02984 -15.81667 -15.66419 -15.02385 -14.57436 -14.43979 -14.20072 -14.00887 -13.91910 -13.82045 -13.60811 -13.41682 -12.91144 -12.86037 -12.74283 -12.54239 -12.34845 -11.93390 -11.62564 -11.36689 -11.22819 -10.88941 -10.53899 -9.68437 -9.51349 -9.44662 -9.04345 -8.75557 -6.25843 -0.74224 -0.05061 0.79360 1.11308 1.17383 1.37874 1.45060 1.55922 1.74737 1.81728 2.12049 2.19079 2.44730 2.64300 2.89336 3.26636 3.45690 3.67258 3.75577 3.89437 4.00942 4.28005 4.31168 4.37544 4.46357 4.63259 4.65925 4.79311 4.86770 4.94819 5.08166 5.11210 5.23912 5.36173 5.38838 5.45265 5.61337 5.82932 5.98205 6.04658 6.05346 6.31934 6.56932 6.61350 6.86339 6.94614 7.25741 8.18155 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.023420 B = 0.002631 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.269409 B =10641.595606 C =11629.079668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.052 3.948 3 Si 0.973 3.027 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.502 4.502 8 H 0.076 0.924 9 C 0.086 3.914 10 C -0.245 4.245 11 C -0.074 4.074 12 C -0.015 4.015 13 N -0.631 5.631 14 C 0.539 3.461 15 O -0.561 6.561 16 C -0.107 4.107 17 C -0.086 4.086 18 C 0.075 3.925 19 F -0.130 7.130 20 C -0.066 4.066 21 C -0.122 4.122 22 C -0.203 4.203 23 C 0.008 3.992 24 O -0.204 6.204 25 C 0.066 3.934 26 C -0.095 4.095 27 C -0.189 4.189 28 H 0.296 0.704 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.414 0.586 32 H 0.170 0.830 33 H 0.180 0.820 34 H 0.202 0.798 35 H 0.250 0.750 36 H 0.126 0.874 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.214 -18.589 11.787 22.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.168 4.168 3 Si 0.792 3.208 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.186 1.186 7 C -0.529 4.529 8 H 0.094 0.906 9 C 0.083 3.917 10 C -0.265 4.265 11 C -0.094 4.094 12 C -0.108 4.108 13 N -0.276 5.276 14 C 0.328 3.672 15 O -0.441 6.441 16 C -0.111 4.111 17 C -0.105 4.105 18 C 0.056 3.944 19 F -0.108 7.108 20 C -0.085 4.085 21 C -0.123 4.123 22 C -0.221 4.221 23 C -0.056 4.056 24 O -0.104 6.104 25 C 0.017 3.983 26 C -0.115 4.115 27 C -0.209 4.209 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.117 0.883 31 H 0.253 0.747 32 H 0.188 0.812 33 H 0.198 0.802 34 H 0.219 0.781 35 H 0.265 0.735 36 H 0.144 0.856 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.527 -18.282 11.385 21.825 hybrid contribution -0.221 0.812 -0.207 0.866 sum -3.748 -17.471 11.179 21.077 Atomic orbital electron populations 1.69934 1.09376 1.31604 1.30890 1.26742 0.95102 1.04468 0.90467 0.85356 0.79618 0.76067 0.79721 1.18347 1.18378 1.18594 1.19726 1.05803 0.95277 1.32102 0.90626 1.17914 0.90640 0.92319 0.90801 1.20704 1.07936 0.92717 1.05162 1.20396 0.97011 0.97463 0.94500 1.17077 1.06458 0.86030 1.01257 1.42664 1.12962 1.14832 1.57173 1.18465 0.85576 0.83181 0.79950 1.90797 1.18721 1.80483 1.54088 1.18552 0.93618 0.93187 1.05712 1.21253 0.92796 0.99651 0.96847 1.17101 0.79842 0.95992 1.01506 1.91549 1.33543 1.96716 1.89039 1.20891 0.90859 0.98250 0.98453 1.20009 0.95704 0.94982 1.01611 1.22901 0.89794 1.02247 1.07177 1.25116 1.02513 0.82292 0.95632 1.84210 1.25438 1.35549 1.65184 1.19675 0.83692 0.95899 0.99074 1.20442 1.00662 0.90706 0.99700 1.20657 1.03233 0.97204 0.99816 0.89342 0.88939 0.88350 0.74742 0.81238 0.80222 0.78054 0.73460 0.85627 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.25 11.78 21.82 0.26 -39.99 16 2 C 0.05 2.60 4.77 85.24 0.41 3.01 16 3 Si 0.97 37.34 29.66 68.60 2.03 39.37 16 4 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 5 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.50 -27.52 8.94 23.39 0.21 -27.31 16 8 H 0.08 4.08 8.02 -2.91 -0.02 4.05 16 9 C 0.09 4.79 5.57 -21.28 -0.12 4.68 16 10 C -0.25 -13.25 9.74 22.48 0.22 -13.03 16 11 C -0.07 -3.75 8.59 22.14 0.19 -3.56 16 12 C -0.02 -0.70 6.25 38.60 0.24 -0.46 16 13 N -0.63 -22.81 5.24 -305.97 -1.60 -24.41 16 14 C 0.54 20.49 7.57 86.69 0.66 21.15 16 15 O -0.56 -26.42 13.72 6.23 0.09 -26.34 16 16 C -0.11 -3.14 5.88 -20.05 -0.12 -3.25 16 17 C -0.09 -1.87 9.50 22.61 0.21 -1.65 16 18 C 0.07 1.41 7.28 22.31 0.16 1.57 16 19 F -0.13 -2.37 17.26 44.97 0.78 -1.59 16 20 C -0.07 -1.07 10.06 22.53 0.23 -0.84 16 21 C -0.12 -2.47 6.39 -20.22 -0.13 -2.60 16 22 C -0.20 -2.88 11.15 23.55 0.26 -2.62 16 23 C 0.01 0.14 11.96 66.85 0.80 0.94 16 24 O -0.20 -5.97 9.92 3.12 0.03 -5.93 16 25 C 0.07 1.88 6.99 23.29 0.16 2.05 16 26 C -0.10 -4.34 9.90 22.14 0.22 -4.12 16 27 C -0.19 -9.87 8.74 22.48 0.20 -9.68 16 28 H 0.30 13.22 8.30 -92.71 -0.77 12.46 16 29 H 0.09 4.84 8.06 -2.91 -0.02 4.82 16 30 H 0.10 5.02 6.45 -2.91 -0.02 5.00 16 31 H 0.41 11.23 6.84 -92.71 -0.63 10.59 16 32 H 0.17 2.85 6.38 -2.91 -0.02 2.83 16 33 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.20 1.15 8.06 -2.91 -0.02 1.13 16 35 H 0.25 1.75 8.06 -2.91 -0.02 1.73 16 36 H 0.13 4.74 8.06 -2.91 -0.02 4.71 16 37 H 0.10 5.32 6.52 -2.91 -0.02 5.30 16 Total: -1.00 -73.18 330.97 5.90 -67.28 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: 0.52 Total: 27.37 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: 3.80 Total: -35.75 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -1.35 Total: -64.40 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: 0.12 Total: -32.27 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.78 Total: -1.59 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Total: -73.18 5.90 -67.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523228172.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.580 kcal (2) G-P(sol) polarization free energy of solvation -73.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds