Wall clock time and date at job start Tue Mar 31 2020 13:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34860 * 116.99465 * 2 1 4 4 O 1.21569 * 120.00305 * 359.72199 * 3 2 1 5 5 C 1.46806 * 119.99766 * 179.97438 * 3 2 1 6 6 S 1.75800 * 125.49589 * 353.89303 * 5 3 2 7 7 C 1.70524 * 91.78921 * 179.97438 * 6 5 3 8 8 C 1.33376 * 111.40517 * 0.02562 * 7 6 5 9 9 C 1.38136 * 125.49899 * 173.58345 * 5 3 2 10 10 C 1.47626 * 123.62951 * 359.97438 * 9 5 3 11 11 O 1.21573 * 120.00010 * 311.78237 * 10 9 5 12 12 N 1.34777 * 119.99883 * 131.78204 * 10 9 5 13 13 C 1.47016 * 125.64869 * 4.89946 * 12 10 9 14 14 C 1.54330 * 107.27064 * 181.02394 * 13 12 10 15 15 C 1.55154 * 102.93988 * 22.19211 * 14 13 12 16 16 O 1.42897 * 111.00723 * 82.57766 * 15 14 13 17 17 C 1.50701 * 111.00440 * 206.38732 * 15 14 13 18 18 H 1.08009 * 119.99479 * 355.09780 * 17 15 14 19 19 C 1.37875 * 120.00527 * 175.09674 * 17 15 14 20 20 N 1.31512 * 119.99569 * 4.62544 * 19 17 15 21 21 Si 1.86796 * 120.00276 * 184.62327 * 19 17 15 22 22 H 1.48497 * 109.47261 * 94.99392 * 21 19 17 23 23 H 1.48507 * 109.47080 * 214.99688 * 21 19 17 24 24 H 1.48504 * 109.47277 * 334.99197 * 21 19 17 25 25 C 1.47423 * 125.64452 * 184.59359 * 12 10 9 26 26 H 1.09007 * 109.47078 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47487 * 299.99821 * 1 2 3 28 28 H 1.08999 * 109.47626 * 60.00592 * 1 2 3 29 29 H 1.08004 * 124.29846 * 180.02562 * 7 6 5 30 30 H 1.08012 * 122.46986 * 179.97438 * 8 7 6 31 31 H 1.08997 * 109.88293 * 300.43577 * 13 12 10 32 32 H 1.09000 * 109.88372 * 61.60569 * 13 12 10 33 33 H 1.09001 * 110.71983 * 140.55669 * 14 13 12 34 34 H 1.08997 * 110.71767 * 263.65189 * 14 13 12 35 35 H 0.96698 * 114.00513 * 179.97438 * 16 15 14 36 36 H 0.97007 * 119.99695 * 180.02562 * 20 19 17 37 37 H 1.09003 * 110.36484 * 274.74195 * 25 12 10 38 38 H 1.08998 * 110.37301 * 37.06958 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2017 0.0000 4 8 1.4020 2.2212 -0.0051 5 6 3.5302 1.2786 0.0006 6 16 4.6241 -0.0891 0.1535 7 6 5.9914 0.9247 0.0525 8 6 5.6398 2.2038 -0.0863 9 6 4.2727 2.4366 -0.1251 10 6 3.6757 3.7778 -0.2803 11 8 2.7936 3.9597 -1.0967 12 7 4.1087 4.8006 0.4832 13 6 5.2306 4.7466 1.4318 14 6 5.3398 6.1374 2.0919 15 6 3.9192 6.7287 1.8935 16 8 3.0237 6.2604 2.9038 17 6 3.9597 8.2349 1.8678 18 1 4.8876 8.7534 2.0594 19 6 2.8125 8.9511 1.5997 20 7 1.6649 8.3249 1.4564 21 14 2.8880 10.8107 1.4401 22 1 3.0284 11.1793 0.0085 23 1 1.6409 11.4053 1.9845 24 1 4.0549 11.3258 2.2007 25 6 3.5398 6.1605 0.5007 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 7.0125 0.5755 0.0953 30 1 6.3660 2.9993 -0.1670 31 1 5.0373 3.9898 2.1920 32 1 6.1540 4.5146 0.9011 33 1 5.5739 6.0436 3.1523 34 1 6.0884 6.7468 1.5856 35 1 2.1234 6.6035 2.8213 36 1 0.8578 8.8287 1.2674 37 1 3.9802 6.7662 -0.2914 38 1 2.4562 6.1199 0.3904 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001548724667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:18 Heat of formation + Delta-G solvation = -119.321306 kcal Electronic energy + Delta-G solvation = -25879.244208 eV Core-core repulsion = 22007.324907 eV Total energy + Delta-G solvation = -3871.919301 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.41115 -39.50916 -37.70177 -36.61418 -36.18534 -34.18791 -32.16262 -30.54332 -30.12957 -28.17174 -27.70226 -26.08020 -24.48964 -22.81648 -22.06895 -20.53216 -19.61513 -18.95125 -18.16348 -17.15394 -16.87910 -16.32722 -16.22508 -15.72428 -15.19872 -15.00542 -14.78943 -14.44722 -13.83781 -13.68346 -13.44748 -13.34040 -12.98513 -12.85194 -12.65719 -12.33204 -12.10307 -11.95527 -11.59269 -11.42682 -11.23986 -11.04666 -10.78147 -10.74331 -10.57230 -10.48992 -10.43726 -10.15744 -9.47220 -9.31684 -9.09901 -8.73692 -8.66228 -8.32558 -7.72510 -6.26443 -4.36288 0.15392 1.20672 1.64848 1.99854 2.58217 2.79615 3.21676 3.29853 3.32130 3.40527 3.75607 4.27924 4.68608 4.81671 4.99916 5.01203 5.08112 5.10015 5.17349 5.43011 5.46507 5.57794 5.69089 5.80778 5.89456 5.98264 6.07949 6.21739 6.32914 6.53004 6.73633 6.87820 7.03711 7.29325 7.38692 7.76319 7.79252 8.02102 8.23366 8.66964 8.76838 9.32808 9.47516 10.80754 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.018350 B = 0.003876 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.478793 B = 7223.115348 C = 8197.648985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.363 6.363 3 C 0.522 3.478 4 O -0.449 6.449 5 C -0.218 4.218 6 S 0.258 5.742 7 C -0.235 4.235 8 C -0.129 4.129 9 C -0.044 4.044 10 C 0.577 3.423 11 O -0.514 6.514 12 N -0.601 5.601 13 C 0.104 3.896 14 C -0.118 4.118 15 C 0.249 3.751 16 O -0.584 6.584 17 C -0.540 4.540 18 H 0.068 0.932 19 C 0.071 3.929 20 N -0.891 5.891 21 Si 0.903 3.097 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.097 3.903 26 H 0.102 0.898 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.176 0.824 30 H 0.155 0.845 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.385 0.615 36 H 0.271 0.729 37 H 0.061 0.939 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.646 -17.953 -1.735 19.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.281 6.281 3 C 0.362 3.638 4 O -0.334 6.334 5 C -0.338 4.338 6 S 0.527 5.473 7 C -0.372 4.372 8 C -0.159 4.159 9 C -0.063 4.063 10 C 0.361 3.639 11 O -0.390 6.390 12 N -0.334 5.334 13 C -0.019 4.019 14 C -0.156 4.156 15 C 0.209 3.791 16 O -0.394 6.394 17 C -0.579 4.579 18 H 0.086 0.914 19 C -0.132 4.132 20 N -0.530 5.530 21 Si 0.731 3.269 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.024 4.024 26 H 0.120 0.880 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.194 0.806 30 H 0.172 0.828 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.237 0.763 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.060 -19.478 -1.887 20.486 hybrid contribution -0.337 2.861 -0.510 2.926 sum 5.723 -16.616 -2.396 17.737 Atomic orbital electron populations 1.23269 0.75557 1.03512 1.03067 1.86509 1.23877 1.32296 1.85388 1.19638 0.86980 0.82154 0.74981 1.91075 1.65084 1.35127 1.42077 1.23746 0.94485 0.97738 1.17800 1.83023 0.92359 1.06717 1.65173 1.25279 1.05202 0.98127 1.08635 1.20067 0.94455 0.97506 1.03895 1.19707 0.93200 0.94215 0.99200 1.17112 0.82588 0.82285 0.81953 1.90807 1.29807 1.83168 1.35247 1.48560 1.33087 1.12084 1.39641 1.22099 0.88395 0.99722 0.91721 1.22631 0.99107 0.93481 1.00367 1.19637 0.85019 0.91531 0.82955 1.86068 1.25598 1.74375 1.53316 1.21487 0.96081 0.90477 1.49811 0.91426 1.25092 0.95160 0.99472 0.93499 1.69644 0.99061 1.36502 1.47795 0.86394 0.77768 0.84369 0.78406 1.20430 1.21001 1.19654 1.23319 1.00222 0.78033 1.00813 0.88002 0.91646 0.91624 0.80620 0.82770 0.92252 0.92631 0.90711 0.90352 0.76341 0.91886 0.92050 0.89721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.57 101.05 1.07 1.50 16 2 O -0.36 -5.06 10.44 -40.93 -0.43 -5.49 16 3 C 0.52 9.20 7.89 34.19 0.27 9.47 16 4 O -0.45 -9.87 13.84 -26.75 -0.37 -10.24 16 5 C -0.22 -3.45 6.50 -36.16 -0.24 -3.69 16 6 S 0.26 2.65 22.92 -107.50 -2.46 0.19 16 7 C -0.23 -2.24 10.87 29.03 0.32 -1.92 16 8 C -0.13 -1.63 8.80 -41.10 -0.36 -1.99 16 9 C -0.04 -0.75 5.35 -105.92 -0.57 -1.32 16 10 C 0.58 12.61 6.76 -12.43 -0.08 12.53 16 11 O -0.51 -13.22 15.34 -16.92 -0.26 -13.48 16 12 N -0.60 -13.02 3.32 -171.58 -0.57 -13.59 16 13 C 0.10 1.86 5.75 -3.06 -0.02 1.84 16 14 C -0.12 -2.34 6.12 -24.89 -0.15 -2.49 16 15 C 0.25 6.13 0.89 -89.51 -0.08 6.06 16 16 O -0.58 -15.40 13.20 -35.23 -0.47 -15.87 16 17 C -0.54 -14.13 8.26 -34.44 -0.28 -14.41 16 18 H 0.07 1.72 7.79 -52.48 -0.41 1.31 16 19 C 0.07 1.88 5.26 -17.82 -0.09 1.78 16 20 N -0.89 -24.29 10.70 55.43 0.59 -23.70 16 21 Si 0.90 20.48 29.54 -169.99 -5.02 15.45 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 C 0.10 2.42 5.51 -2.41 -0.01 2.41 16 26 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.18 1.03 8.06 -52.48 -0.42 0.61 16 30 H 0.15 1.72 6.39 -52.48 -0.34 1.38 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.79 6.31 -51.93 -0.33 0.47 16 33 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 34 H 0.08 1.43 8.04 -51.93 -0.42 1.02 16 35 H 0.39 10.56 7.16 45.56 0.33 10.89 16 36 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.06 1.54 8.04 -51.93 -0.42 1.12 16 38 H 0.08 2.41 7.56 -51.93 -0.39 2.01 16 LS Contribution 337.52 15.07 5.09 5.09 Total: -1.00 -33.64 337.52 -7.78 -41.42 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -3.64 Total: 10.46 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: -0.24 Total: 9.76 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.02 Total: -37.29 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -1.52 Total: -45.08 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.46 Total: 0.19 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.64 -7.78 -41.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548724667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.900 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds