Wall clock time and date at job start Tue Mar 31 2020 13:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34860 * 116.99465 * 2 1 4 4 O 1.21569 * 120.00305 * 359.72199 * 3 2 1 5 5 C 1.46806 * 119.99766 * 179.97438 * 3 2 1 6 6 S 1.75800 * 125.49589 * 353.89303 * 5 3 2 7 7 C 1.70524 * 91.78921 * 179.97438 * 6 5 3 8 8 C 1.33376 * 111.40517 * 0.02562 * 7 6 5 9 9 C 1.38136 * 125.49899 * 173.58345 * 5 3 2 10 10 C 1.47626 * 123.62951 * 359.97438 * 9 5 3 11 11 O 1.21573 * 120.00010 * 311.78237 * 10 9 5 12 12 N 1.34777 * 119.99883 * 131.78204 * 10 9 5 13 13 C 1.47016 * 125.64869 * 4.89946 * 12 10 9 14 14 C 1.54330 * 107.27064 * 181.02394 * 13 12 10 15 15 C 1.55154 * 102.93988 * 22.19211 * 14 13 12 16 16 O 1.42897 * 111.00723 * 82.57766 * 15 14 13 17 17 C 1.50701 * 111.00440 * 206.38732 * 15 14 13 18 18 H 1.08009 * 119.99479 * 355.09780 * 17 15 14 19 19 C 1.37875 * 120.00527 * 175.09674 * 17 15 14 20 20 N 1.31512 * 119.99569 * 4.62544 * 19 17 15 21 21 Si 1.86796 * 120.00276 * 184.62327 * 19 17 15 22 22 H 1.48497 * 109.47261 * 94.99392 * 21 19 17 23 23 H 1.48507 * 109.47080 * 214.99688 * 21 19 17 24 24 H 1.48504 * 109.47277 * 334.99197 * 21 19 17 25 25 C 1.47423 * 125.64452 * 184.59359 * 12 10 9 26 26 H 1.09007 * 109.47078 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47487 * 299.99821 * 1 2 3 28 28 H 1.08999 * 109.47626 * 60.00592 * 1 2 3 29 29 H 1.08004 * 124.29846 * 180.02562 * 7 6 5 30 30 H 1.08012 * 122.46986 * 179.97438 * 8 7 6 31 31 H 1.08997 * 109.88293 * 300.43577 * 13 12 10 32 32 H 1.09000 * 109.88372 * 61.60569 * 13 12 10 33 33 H 1.09001 * 110.71983 * 140.55669 * 14 13 12 34 34 H 1.08997 * 110.71767 * 263.65189 * 14 13 12 35 35 H 0.96698 * 114.00513 * 179.97438 * 16 15 14 36 36 H 0.97007 * 119.99695 * 180.02562 * 20 19 17 37 37 H 1.09003 * 110.36484 * 274.74195 * 25 12 10 38 38 H 1.08998 * 110.37301 * 37.06958 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2017 0.0000 4 8 1.4020 2.2212 -0.0051 5 6 3.5302 1.2786 0.0006 6 16 4.6241 -0.0891 0.1535 7 6 5.9914 0.9247 0.0525 8 6 5.6398 2.2038 -0.0863 9 6 4.2727 2.4366 -0.1251 10 6 3.6757 3.7778 -0.2803 11 8 2.7936 3.9597 -1.0967 12 7 4.1087 4.8006 0.4832 13 6 5.2306 4.7466 1.4318 14 6 5.3398 6.1374 2.0919 15 6 3.9192 6.7287 1.8935 16 8 3.0237 6.2604 2.9038 17 6 3.9597 8.2349 1.8678 18 1 4.8876 8.7534 2.0594 19 6 2.8125 8.9511 1.5997 20 7 1.6649 8.3249 1.4564 21 14 2.8880 10.8107 1.4401 22 1 3.0284 11.1793 0.0085 23 1 1.6409 11.4053 1.9845 24 1 4.0549 11.3258 2.2007 25 6 3.5398 6.1605 0.5007 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 7.0125 0.5755 0.0953 30 1 6.3660 2.9993 -0.1670 31 1 5.0373 3.9898 2.1920 32 1 6.1540 4.5146 0.9011 33 1 5.5739 6.0436 3.1523 34 1 6.0884 6.7468 1.5856 35 1 2.1234 6.6035 2.8213 36 1 0.8578 8.8287 1.2674 37 1 3.9802 6.7662 -0.2914 38 1 2.4562 6.1199 0.3904 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001548724667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:18 Heat of formation + Delta-G solvation = -144.216346 kcal Electronic energy + Delta-G solvation = -25880.323738 eV Core-core repulsion = 22007.324907 eV Total energy + Delta-G solvation = -3872.998831 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.73472 -40.99200 -39.22193 -38.09106 -37.46800 -36.06494 -34.22156 -31.94432 -31.51690 -29.80238 -28.91828 -27.63598 -26.04095 -24.34582 -23.19184 -21.85454 -21.48771 -20.08324 -19.61281 -19.07870 -18.27018 -17.54182 -17.41938 -17.26449 -17.00579 -16.38912 -16.35229 -16.03204 -15.22503 -14.99712 -14.79029 -14.66983 -14.58873 -14.52841 -13.81291 -13.63128 -13.59230 -13.40514 -13.28515 -13.05449 -12.87543 -12.54001 -12.34284 -12.22698 -12.20535 -12.02108 -11.92400 -11.81653 -11.26304 -11.06474 -10.66841 -10.34338 -10.11261 -9.65291 -9.45715 -8.27359 -6.45321 -0.93805 0.23914 0.76989 0.97620 1.39900 1.41073 1.42614 1.53441 1.54090 1.88379 2.23520 2.37784 2.99220 3.49027 3.73540 3.77195 3.97293 4.10311 4.11009 4.24124 4.25380 4.31512 4.35513 4.55245 4.62172 4.71637 4.79160 4.95741 5.00972 5.02804 5.08252 5.16645 5.29533 5.39844 5.44552 5.73581 6.02185 6.54639 6.57279 6.66448 7.11898 7.25814 7.34322 8.78421 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.018350 B = 0.003876 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.478793 B = 7223.115348 C = 8197.648985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.352 6.352 3 C 0.519 3.481 4 O -0.513 6.513 5 C -0.271 4.271 6 S 0.363 5.637 7 C -0.203 4.203 8 C -0.147 4.147 9 C -0.066 4.066 10 C 0.567 3.433 11 O -0.572 6.572 12 N -0.607 5.607 13 C 0.106 3.894 14 C -0.111 4.111 15 C 0.231 3.769 16 O -0.592 6.592 17 C -0.556 4.556 18 H 0.075 0.925 19 C 0.023 3.977 20 N -0.920 5.920 21 Si 0.968 3.032 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.260 1.260 25 C 0.110 3.890 26 H 0.150 0.850 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.228 0.772 30 H 0.171 0.829 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.375 0.625 36 H 0.269 0.731 37 H 0.048 0.952 38 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.451 -20.562 -1.148 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.269 6.269 3 C 0.362 3.638 4 O -0.403 6.403 5 C -0.391 4.391 6 S 0.633 5.367 7 C -0.341 4.341 8 C -0.175 4.175 9 C -0.087 4.087 10 C 0.355 3.645 11 O -0.452 6.452 12 N -0.339 5.339 13 C -0.015 4.015 14 C -0.149 4.149 15 C 0.191 3.809 16 O -0.400 6.400 17 C -0.594 4.594 18 H 0.093 0.907 19 C -0.178 4.178 20 N -0.560 5.560 21 Si 0.793 3.207 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.183 1.183 25 C -0.013 4.013 26 H 0.167 0.833 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.245 0.755 30 H 0.188 0.812 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.224 0.776 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.925 -22.142 -1.271 24.298 hybrid contribution -1.522 3.472 -0.696 3.854 sum 8.403 -18.670 -1.966 20.568 Atomic orbital electron populations 1.23603 0.74023 1.06258 1.02230 1.86503 1.25398 1.30423 1.84603 1.20206 0.88140 0.82101 0.73336 1.91046 1.66733 1.37154 1.45335 1.23978 0.94444 1.00522 1.20123 1.82696 0.89787 1.02856 1.61374 1.25901 1.07452 0.96646 1.04060 1.20073 0.92250 0.99558 1.05601 1.19490 0.95464 0.91487 1.02232 1.17980 0.81785 0.84077 0.80701 1.90752 1.32375 1.84396 1.37633 1.48637 1.33981 1.10888 1.40392 1.22315 0.88882 0.98717 0.91619 1.22656 0.95994 0.94497 1.01737 1.19944 0.87246 0.91510 0.82239 1.86057 1.25240 1.74567 1.54136 1.21852 0.96373 0.91586 1.49581 0.90663 1.25916 0.94826 1.03854 0.93171 1.69791 0.99618 1.37978 1.48608 0.85391 0.77933 0.79132 0.78281 1.20354 1.21084 1.18339 1.22864 0.97096 0.80367 1.00960 0.83253 0.92466 0.92688 0.75542 0.81214 0.91436 0.87791 0.89504 0.88496 0.77578 0.92163 0.93356 0.94860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 10.57 113.37 1.20 1.89 16 2 O -0.35 -9.78 10.44 -57.73 -0.60 -10.39 16 3 C 0.52 19.02 7.89 70.06 0.55 19.58 16 4 O -0.51 -24.57 13.84 26.72 0.37 -24.20 16 5 C -0.27 -8.40 6.50 24.49 0.16 -8.24 16 6 S 0.36 5.82 22.92 -56.49 -1.29 4.52 16 7 C -0.20 -2.64 10.87 66.72 0.73 -1.92 16 8 C -0.15 -3.16 8.80 21.29 0.19 -2.98 16 9 C -0.07 -2.23 5.35 -20.71 -0.11 -2.34 16 10 C 0.57 26.05 6.76 86.72 0.59 26.64 16 11 O -0.57 -31.94 15.34 17.30 0.27 -31.67 16 12 N -0.61 -27.14 3.32 -815.01 -2.71 -29.85 16 13 C 0.11 3.62 5.75 86.73 0.50 4.12 16 14 C -0.11 -4.26 6.12 31.78 0.19 -4.06 16 15 C 0.23 11.68 0.89 -10.07 -0.01 11.67 16 16 O -0.59 -32.56 13.20 -148.98 -1.97 -34.52 16 17 C -0.56 -29.56 8.26 25.60 0.21 -29.35 16 18 H 0.08 3.79 7.79 -2.91 -0.02 3.77 16 19 C 0.02 1.23 5.26 84.65 0.45 1.68 16 20 N -0.92 -52.93 10.70 21.45 0.23 -52.70 16 21 Si 0.97 42.77 29.54 68.60 2.03 44.79 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 25 C 0.11 5.82 5.51 86.93 0.48 6.30 16 26 H 0.15 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.23 0.71 8.06 -2.91 -0.02 0.68 16 30 H 0.17 3.02 6.39 -2.90 -0.02 3.00 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.10 2.56 6.31 -2.39 -0.02 2.54 16 33 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 34 H 0.10 3.32 8.04 -2.39 -0.02 3.30 16 35 H 0.37 21.95 7.16 -74.06 -0.53 21.42 16 36 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 37 H 0.05 2.59 8.04 -2.39 -0.02 2.57 16 38 H 0.03 2.06 7.56 -2.39 -0.02 2.04 16 Total: -1.00 -83.42 337.52 2.02 -81.40 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: 0.59 Total: 29.64 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: 5.12 Total: 22.99 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -2.48 Total: -82.55 kcal Atomic # 8 Polarization: -98.86 SS G_CDS: -1.93 Total: -100.79 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 5.82 SS G_CDS: -1.29 Total: 4.52 kcal Total: -83.42 2.02 -81.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001548724667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.818 kcal (2) G-P(sol) polarization free energy of solvation -83.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds