Wall clock time and date at job start Tue Mar 31 2020 14:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00110 * 2 1 4 4 H 1.48509 * 109.47115 * 264.68182 * 3 2 1 5 5 H 1.48499 * 109.47309 * 24.67995 * 3 2 1 6 6 H 1.48494 * 109.47077 * 144.68477 * 3 2 1 7 7 C 1.37871 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00124 * 5.05320 * 7 2 1 9 9 C 1.50701 * 119.99974 * 185.05899 * 7 2 1 10 10 H 1.08990 * 109.47164 * 35.14148 * 9 7 2 11 11 N 1.46501 * 109.47252 * 275.13351 * 9 7 2 12 12 C 1.34770 * 119.99722 * 154.99886 * 11 9 7 13 13 O 1.21285 * 120.00550 * 0.02562 * 12 11 9 14 14 C 1.50705 * 120.00001 * 180.02562 * 12 11 9 15 15 C 1.50700 * 109.61262 * 59.77579 * 14 12 11 16 16 O 1.20825 * 119.99526 * 120.22605 * 15 14 12 17 17 O 1.34223 * 120.00430 * 300.22328 * 15 14 12 18 18 C 1.53173 * 109.54661 * 180.02562 * 14 12 11 19 19 C 1.53090 * 109.16469 * 62.88470 * 18 14 12 20 20 O 1.42908 * 109.42345 * 57.60086 * 19 18 14 21 21 C 1.42904 * 114.09974 * 298.86576 * 20 19 18 22 22 C 1.53089 * 109.42586 * 61.13693 * 21 20 19 23 23 C 1.53002 * 109.47048 * 155.13788 * 9 7 2 24 24 F 1.39894 * 109.47231 * 175.48426 * 23 9 7 25 25 F 1.39909 * 109.47184 * 295.48837 * 23 9 7 26 26 F 1.39904 * 109.47149 * 55.48413 * 23 9 7 27 27 H 0.97004 * 119.99592 * 359.97438 * 1 2 3 28 28 H 0.96998 * 119.99732 * 335.01065 * 11 9 7 29 29 H 0.96699 * 117.00316 * 180.02562 * 17 15 14 30 30 H 1.09001 * 109.52005 * 302.97936 * 18 14 12 31 31 H 1.08994 * 109.52661 * 182.79019 * 18 14 12 32 32 H 1.08996 * 109.48481 * 177.59088 * 19 18 14 33 33 H 1.09006 * 109.47962 * 297.61971 * 19 18 14 34 34 H 1.09005 * 109.46647 * 301.15097 * 21 20 19 35 35 H 1.09000 * 109.48725 * 181.13316 * 21 20 19 36 36 H 1.08996 * 109.52351 * 182.49251 * 22 21 20 37 37 H 1.08998 * 109.52330 * 62.30231 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6091 1.9815 -1.3941 5 1 1.3950 2.6825 0.5846 6 1 3.4860 1.4752 0.8093 7 6 2.0045 -1.1940 -0.0005 8 1 1.4676 -2.1275 -0.0833 9 6 3.5071 -1.1966 0.1146 10 1 3.8228 -0.3842 0.7689 11 7 4.0989 -1.0128 -1.2129 12 6 5.3345 -0.4882 -1.3330 13 8 5.9568 -0.1689 -0.3422 14 6 5.9431 -0.2985 -2.6986 15 6 5.0739 0.6216 -3.5164 16 8 5.5251 1.6582 -3.9427 17 8 3.7986 0.2896 -3.7713 18 6 7.3419 0.3092 -2.5563 19 6 8.2391 -0.6681 -1.7924 20 8 8.2765 -1.9184 -2.4834 21 6 7.0035 -2.5561 -2.6053 22 6 6.0567 -1.6546 -3.4019 23 6 3.9715 -2.5321 0.6993 24 9 5.3697 -2.5752 0.7106 25 9 3.4903 -2.6613 2.0067 26 9 3.4788 -3.5809 -0.0846 27 1 -0.4850 0.8401 0.0004 28 1 3.6013 -1.2684 -2.0054 29 1 3.2804 0.9114 -4.3004 30 1 7.2767 1.2488 -2.0077 31 1 7.7619 0.4922 -3.5453 32 1 9.2474 -0.2595 -1.7253 33 1 7.8406 -0.8191 -0.7891 34 1 6.5887 -2.7319 -1.6126 35 1 7.1215 -3.5076 -3.1237 36 1 5.0724 -2.1194 -3.4580 37 1 6.4507 -1.5113 -4.4080 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594605754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:50:20 Heat of formation + Delta-G solvation = -355.085061 kcal Electronic energy + Delta-G solvation = -31064.236430 eV Core-core repulsion = 26197.484033 eV Total energy + Delta-G solvation = -4866.752396 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.89815 -48.41394 -48.37396 -42.61298 -40.67690 -39.36661 -37.39506 -36.71805 -35.21941 -34.46541 -32.23742 -30.95665 -27.84697 -26.94083 -24.80576 -24.16825 -23.31490 -22.57562 -20.98157 -19.92129 -19.38297 -19.34753 -18.67028 -18.54261 -18.39789 -17.97192 -17.12051 -17.04564 -16.66069 -16.37578 -15.96092 -15.63560 -15.44128 -15.25019 -15.19786 -14.88699 -14.83611 -14.76149 -14.58288 -14.54238 -14.50950 -14.15437 -13.76450 -13.47153 -13.38411 -13.03343 -12.71491 -12.66934 -12.42875 -12.20535 -12.06603 -11.94117 -11.84929 -11.56322 -11.20304 -10.95483 -10.51047 -10.22690 -8.57374 -6.74863 0.74136 1.17028 1.20076 1.29430 1.33766 1.78225 1.97203 2.08210 2.12181 2.85325 2.89441 3.05073 3.20084 3.32826 3.36143 3.43951 3.75775 3.82669 3.99989 4.20198 4.36261 4.40786 4.42741 4.54206 4.65815 4.73552 4.87608 4.92117 4.93990 5.02767 5.31641 5.37228 5.84223 6.13753 6.42530 6.49789 6.72735 6.97105 7.05349 8.54713 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.012693 B = 0.007676 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.368147 B = 3646.744614 C = 4913.685863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.072 3.928 3 Si 0.912 3.088 4 H -0.256 1.256 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.533 4.533 8 H 0.072 0.928 9 C 0.202 3.798 10 H 0.082 0.918 11 N -0.699 5.699 12 C 0.509 3.491 13 O -0.548 6.548 14 C -0.075 4.075 15 C 0.498 3.502 16 O -0.526 6.526 17 O -0.500 6.500 18 C -0.115 4.115 19 C 0.054 3.946 20 O -0.386 6.386 21 C 0.056 3.944 22 C -0.136 4.136 23 C 0.446 3.554 24 F -0.189 7.189 25 F -0.187 7.187 26 F -0.183 7.183 27 H 0.280 0.720 28 H 0.416 0.584 29 H 0.433 0.567 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.119 0.881 33 H 0.057 0.943 34 H 0.036 0.964 35 H 0.132 0.868 36 H 0.106 0.894 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.409 -1.999 -8.641 13.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.180 1.180 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.571 4.571 8 H 0.090 0.910 9 C 0.098 3.902 10 H 0.100 0.900 11 N -0.352 5.352 12 C 0.294 3.706 13 O -0.426 6.426 14 C -0.080 4.080 15 C 0.340 3.660 16 O -0.415 6.415 17 O -0.314 6.314 18 C -0.153 4.153 19 C -0.023 4.023 20 O -0.305 6.305 21 C -0.021 4.021 22 C -0.173 4.173 23 C 0.390 3.610 24 F -0.171 7.171 25 F -0.169 7.169 26 F -0.164 7.164 27 H 0.090 0.910 28 H 0.256 0.744 29 H 0.296 0.704 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.137 0.863 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.150 0.850 36 H 0.124 0.876 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.146 -1.766 -7.889 13.769 hybrid contribution -0.899 1.145 -0.180 1.467 sum 10.248 -0.621 -8.068 13.057 Atomic orbital electron populations 1.69921 1.07438 1.29247 1.46222 1.25377 0.95059 1.01228 0.91877 0.86286 0.79294 0.80578 0.80175 1.18045 1.20197 1.19144 1.20687 0.86925 0.95512 1.53978 0.91010 1.20013 0.95154 0.89969 0.85094 0.90016 1.47299 1.15600 1.61906 1.10411 1.20549 0.82049 0.77580 0.90394 1.90655 1.61323 1.51111 1.39532 1.21057 0.95907 0.98788 0.92239 1.22755 0.81346 0.84598 0.77338 1.90702 1.74660 1.25655 1.50473 1.84461 1.23301 1.54512 1.69110 1.21953 0.90260 0.99566 1.03549 1.22851 1.01176 0.83122 0.95104 1.87888 1.29781 1.35048 1.77759 1.22745 0.83516 0.96671 0.99137 1.22366 1.03606 0.90495 1.00882 1.21294 0.74145 0.89329 0.76188 1.93141 1.30565 1.97048 1.96340 1.93106 1.88244 1.96570 1.38971 1.93098 1.87657 1.61147 1.74508 0.90998 0.74440 0.70358 0.90687 0.88128 0.86279 0.92450 0.94563 0.85017 0.87582 0.86912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.64 13.96 21.45 0.30 -47.35 16 2 C 0.07 3.60 5.47 84.65 0.46 4.06 16 3 Si 0.91 40.10 27.26 68.60 1.87 41.97 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.27 -12.15 6.14 99.48 0.61 -11.54 16 7 C -0.53 -26.08 8.68 25.60 0.22 -25.85 16 8 H 0.07 3.85 7.68 -2.91 -0.02 3.83 16 9 C 0.20 8.75 1.43 44.25 0.06 8.81 16 10 H 0.08 3.85 5.18 -2.39 -0.01 3.84 16 11 N -0.70 -25.77 4.20 -446.10 -1.87 -27.64 16 12 C 0.51 18.07 4.57 87.66 0.40 18.47 16 13 O -0.55 -22.37 12.45 -3.04 -0.04 -22.41 16 14 C -0.08 -2.12 0.58 -53.55 -0.03 -2.15 16 15 C 0.50 14.05 6.92 71.24 0.49 14.54 16 16 O -0.53 -16.86 16.73 21.97 0.37 -16.49 16 17 O -0.50 -11.83 11.81 -51.35 -0.61 -12.44 16 18 C -0.12 -3.10 3.88 30.68 0.12 -2.98 16 19 C 0.05 1.42 6.55 72.01 0.47 1.89 16 20 O -0.39 -9.99 10.77 -148.98 -1.60 -11.60 16 21 C 0.06 1.30 6.62 72.01 0.48 1.78 16 22 C -0.14 -2.92 4.79 30.68 0.15 -2.78 16 23 C 0.45 18.47 2.83 71.98 0.20 18.67 16 24 F -0.19 -7.54 15.38 44.97 0.69 -6.85 16 25 F -0.19 -8.06 17.13 44.97 0.77 -7.29 16 26 F -0.18 -7.23 16.63 44.97 0.75 -6.48 16 27 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 28 H 0.42 13.95 6.67 -92.71 -0.62 13.33 16 29 H 0.43 6.72 9.10 -74.06 -0.67 6.05 16 30 H 0.07 2.22 8.03 -2.39 -0.02 2.20 16 31 H 0.10 2.38 8.02 -2.39 -0.02 2.36 16 32 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.06 1.84 5.80 -2.38 -0.01 1.82 16 34 H 0.04 1.03 7.20 -2.38 -0.02 1.01 16 35 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.11 2.06 7.52 -2.39 -0.02 2.04 16 37 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -61.93 316.95 3.44 -58.50 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -0.22 Total: 23.63 kcal Atomic # 6 Polarization: 31.43 SS G_CDS: 3.03 Total: 34.46 kcal Atomic # 7 Polarization: -73.41 SS G_CDS: -1.58 Total: -74.99 kcal Atomic # 8 Polarization: -61.06 SS G_CDS: -1.88 Total: -62.94 kcal Atomic # 9 Polarization: -22.83 SS G_CDS: 2.21 Total: -20.62 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 1.87 Total: 41.97 kcal Total: -61.93 3.44 -58.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -296.587 kcal (2) G-P(sol) polarization free energy of solvation -61.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -358.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -355.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds