Wall clock time and date at job start Tue Mar 31 2020 14:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31300 * 1 3 3 Si 1.86799 * 119.99833 * 2 1 4 4 H 1.48505 * 109.46916 * 264.98548 * 3 2 1 5 5 H 1.48504 * 109.47342 * 24.98213 * 3 2 1 6 6 H 1.48493 * 109.47316 * 144.98819 * 3 2 1 7 7 C 1.38983 * 120.00060 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99692 * 185.85494 * 7 2 1 9 9 N 1.37321 * 120.00108 * 5.58931 * 7 2 1 10 10 C 1.36487 * 126.06956 * 174.34937 * 9 7 2 11 11 C 1.35685 * 107.50678 * 180.02562 * 10 9 7 12 12 N 1.40592 * 126.07780 * 180.02562 * 11 10 9 13 13 C 1.34782 * 119.99645 * 179.97438 * 12 11 10 14 14 O 1.21306 * 119.99992 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99693 * 180.02562 * 13 12 11 16 16 C 1.50696 * 109.22291 * 284.38912 * 15 13 12 17 17 O 1.20825 * 120.00130 * 120.00471 * 16 15 13 18 18 O 1.34233 * 120.00278 * 300.00761 * 16 15 13 19 19 C 1.52592 * 109.22527 * 165.03208 * 15 13 12 20 20 C 1.53096 * 109.95274 * 310.35255 * 19 15 13 21 21 S 1.81743 * 108.84268 * 296.97217 * 20 19 15 22 22 C 1.81750 * 102.21841 * 53.26843 * 21 20 19 23 23 C 1.52580 * 109.23076 * 43.79766 * 15 13 12 24 24 C 1.40647 * 107.83687 * 359.97438 * 11 10 9 25 25 N 1.30905 * 108.38309 * 359.72094 * 24 11 10 26 26 H 0.97002 * 119.99928 * 0.02562 * 1 2 3 27 27 H 1.08001 * 126.24849 * 0.03034 * 10 9 7 28 28 H 0.96995 * 120.00793 * 359.97438 * 12 11 10 29 29 H 0.96694 * 117.00263 * 179.97438 * 18 16 15 30 30 H 1.09003 * 109.38825 * 70.49630 * 19 15 13 31 31 H 1.08991 * 109.38958 * 190.19992 * 19 15 13 32 32 H 1.09004 * 109.57215 * 177.16352 * 20 19 15 33 33 H 1.08996 * 109.68413 * 56.84889 * 20 19 15 34 34 H 1.09003 * 109.57476 * 186.92847 * 22 21 20 35 35 H 1.08998 * 109.68350 * 66.61084 * 22 21 20 36 36 H 1.09001 * 109.39200 * 169.79941 * 23 15 13 37 37 H 1.09000 * 109.38644 * 289.49271 * 23 15 13 38 38 H 1.07995 * 125.80093 * 179.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.6004 1.9852 -1.3948 5 1 1.3954 2.6810 0.5913 6 1 3.4875 1.4732 0.8032 7 6 2.0079 -1.2036 0.0005 8 1 3.0838 -1.2059 0.0960 9 7 1.3263 -2.3901 -0.1148 10 6 1.8850 -3.6294 -0.2366 11 6 0.8716 -4.5273 -0.3239 12 7 1.0087 -5.9199 -0.4600 13 6 -0.0873 -6.7007 -0.5353 14 8 -1.1920 -6.2020 -0.4851 15 6 0.0596 -8.1935 -0.6805 16 6 0.4591 -8.5172 -2.0971 17 8 1.4986 -9.0932 -2.3150 18 8 -0.3398 -8.1655 -3.1168 19 6 -1.2764 -8.8624 -0.3709 20 6 -1.8321 -8.3314 0.9532 21 16 -0.6881 -8.7807 2.2921 22 6 0.8955 -8.1336 1.6783 23 6 1.1441 -8.6868 0.2726 24 6 -0.3404 -3.8172 -0.2528 25 7 -0.0659 -2.5440 -0.1218 26 1 -0.4850 0.8401 -0.0004 27 1 2.9411 -3.8543 -0.2594 28 1 1.8919 -6.3188 -0.4997 29 1 -0.0412 -8.3942 -4.0076 30 1 -1.9833 -8.6471 -1.1723 31 1 -1.1329 -9.9403 -0.2969 32 1 -2.8093 -8.7754 1.1433 33 1 -1.9274 -7.2468 0.9027 34 1 1.7006 -8.4484 2.3423 35 1 0.8576 -7.0449 1.6409 36 1 1.1297 -9.7763 0.3046 37 1 2.1182 -8.3497 -0.0820 38 1 -1.3292 -4.2495 -0.2947 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594610996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:27 Heat of formation + Delta-G solvation = -34.701458 kcal Electronic energy + Delta-G solvation = -26033.269707 eV Core-core repulsion = 22197.312549 eV Total energy + Delta-G solvation = -3835.957158 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.49894 -39.90438 -39.00099 -36.60876 -35.82984 -34.63087 -33.31310 -31.52082 -30.33651 -29.12234 -27.68524 -25.04516 -23.55783 -23.08311 -22.61651 -21.02338 -19.76375 -19.39124 -18.46065 -17.64260 -17.36405 -17.27710 -16.02759 -15.68786 -15.55746 -15.29990 -14.73788 -14.56599 -14.11662 -13.96814 -13.72981 -13.48582 -13.19672 -12.98016 -12.93797 -12.92388 -12.56322 -12.12653 -11.80244 -11.73102 -11.65034 -11.52374 -11.30209 -11.01440 -10.85309 -10.69040 -10.58278 -10.24241 -9.82380 -9.33203 -9.22008 -8.89866 -8.14945 -7.69502 -6.83000 -6.62943 -4.30825 1.71518 1.78230 2.32525 2.47211 2.82988 2.98343 3.00976 3.06435 3.25284 3.57654 3.79636 4.16079 4.22622 4.34505 4.48784 4.67741 4.76943 4.94531 4.94882 5.04672 5.13992 5.26660 5.29569 5.51398 5.57666 5.74449 5.78353 6.06709 6.15125 6.19411 6.32582 6.74571 6.86018 6.94632 7.14078 7.58193 7.76994 7.95610 8.15385 8.43697 8.66121 9.28903 9.57587 10.33066 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019472 B = 0.003481 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.600383 B = 8041.895016 C = 8524.533779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.048 3.952 3 Si 0.935 3.065 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.324 4.324 8 H 0.117 0.883 9 N -0.139 5.139 10 C -0.081 4.081 11 C -0.067 4.067 12 N -0.614 5.614 13 C 0.509 3.491 14 O -0.508 6.508 15 C -0.073 4.073 16 C 0.499 3.501 17 O -0.505 6.505 18 O -0.500 6.500 19 C -0.092 4.092 20 C -0.096 4.096 21 S -0.271 6.271 22 C -0.091 4.091 23 C -0.105 4.105 24 C -0.028 4.028 25 N -0.260 5.260 26 H 0.276 0.724 27 H 0.146 0.854 28 H 0.397 0.603 29 H 0.413 0.587 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.125 0.875 34 H 0.114 0.886 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.664 -15.958 -1.516 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.170 4.170 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.456 4.456 8 H 0.135 0.865 9 N 0.094 4.906 10 C -0.232 4.232 11 C -0.172 4.172 12 N -0.256 5.256 13 C 0.293 3.707 14 O -0.385 6.385 15 C -0.078 4.078 16 C 0.340 3.660 17 O -0.392 6.392 18 O -0.311 6.311 19 C -0.132 4.132 20 C -0.243 4.243 21 S -0.044 6.044 22 C -0.239 4.239 23 C -0.144 4.144 24 C -0.203 4.203 25 N -0.091 5.091 26 H 0.087 0.913 27 H 0.163 0.837 28 H 0.231 0.769 29 H 0.273 0.727 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.143 0.857 34 H 0.133 0.867 35 H 0.116 0.884 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.113 -14.828 -0.040 14.828 hybrid contribution 1.823 0.065 -1.883 2.622 sum 1.936 -14.763 -1.923 15.013 Atomic orbital electron populations 1.70213 1.06178 1.28183 1.34790 1.25648 0.95695 1.00316 0.95344 0.85838 0.79352 0.79782 0.79164 1.19473 1.20057 1.18814 1.19887 0.92156 0.80637 1.52935 0.86550 1.44559 1.04019 1.03666 1.38315 1.21257 0.96838 0.85737 1.19348 1.17226 0.94504 0.81076 1.24419 1.42580 1.07959 1.05514 1.69509 1.19416 0.85136 0.86346 0.79825 1.90544 1.25044 1.73516 1.49358 1.20817 1.00530 0.96299 0.90142 1.22656 0.81104 0.74876 0.87394 1.90731 1.24372 1.38691 1.85437 1.84586 1.51733 1.75631 1.19190 1.21540 0.93022 0.99719 0.98911 1.23916 0.99429 1.08208 0.92769 1.86741 1.06235 1.78010 1.33441 1.23591 0.97466 1.04600 0.98244 1.21722 0.97274 1.03082 0.92318 1.24080 0.97819 0.90936 1.07494 1.78274 0.90263 1.15021 1.25555 0.91339 0.83664 0.76890 0.72750 0.88509 0.89626 0.87368 0.85675 0.86731 0.88443 0.88569 0.89109 0.80738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.01 11.84 55.49 0.66 -20.35 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 3 Si 0.93 18.54 29.56 -169.99 -5.02 13.52 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.32 -8.37 10.24 -14.82 -0.15 -8.52 16 8 H 0.12 2.68 7.84 -52.48 -0.41 2.27 16 9 N -0.14 -3.69 3.74 -11.41 -0.04 -3.74 16 10 C -0.08 -1.83 11.49 -16.39 -0.19 -2.02 16 11 C -0.07 -1.47 6.90 -83.84 -0.58 -2.04 16 12 N -0.61 -10.30 4.43 -10.00 -0.04 -10.35 16 13 C 0.51 8.17 4.48 -10.98 -0.05 8.12 16 14 O -0.51 -9.66 10.83 5.53 0.06 -9.60 16 15 C -0.07 -0.89 0.62 -157.24 -0.10 -0.99 16 16 C 0.50 6.08 6.88 36.00 0.25 6.33 16 17 O -0.50 -6.74 16.52 -18.75 -0.31 -7.05 16 18 O -0.50 -5.43 12.99 -39.27 -0.51 -5.94 16 19 C -0.09 -1.03 4.31 -26.89 -0.12 -1.14 16 20 C -0.10 -1.18 6.06 37.21 0.23 -0.95 16 21 S -0.27 -3.39 22.33 -107.50 -2.40 -5.79 16 22 C -0.09 -1.04 6.13 37.20 0.23 -0.81 16 23 C -0.10 -1.10 3.67 -26.90 -0.10 -1.20 16 24 C -0.03 -0.70 10.85 -17.04 -0.18 -0.88 16 25 N -0.26 -7.34 10.42 30.80 0.32 -7.02 16 26 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 27 H 0.15 2.76 8.06 -52.49 -0.42 2.33 16 28 H 0.40 5.49 7.60 -40.82 -0.31 5.18 16 29 H 0.41 2.48 9.10 45.56 0.41 2.90 16 30 H 0.10 1.08 7.80 -51.93 -0.40 0.68 16 31 H 0.09 0.80 8.06 -51.93 -0.42 0.38 16 32 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.13 1.92 5.18 -51.93 -0.27 1.65 16 34 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.10 1.34 6.22 -51.93 -0.32 1.01 16 36 H 0.10 0.92 8.06 -51.93 -0.42 0.50 16 37 H 0.09 0.89 6.88 -51.93 -0.36 0.53 16 38 H 0.18 4.31 5.92 -52.49 -0.31 4.00 16 LS Contribution 326.39 15.07 4.92 4.92 Total: -1.00 -33.09 326.39 -6.44 -39.53 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -3.21 Total: 14.89 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -0.86 Total: -3.01 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.89 Total: -41.46 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.76 Total: -22.60 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.52 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -2.40 Total: -5.79 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.09 -6.44 -39.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594610996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.833 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds