Wall clock time and date at job start Tue Mar 31 2020 13:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34714 * 116.99790 * 2 1 4 4 O 1.21461 * 120.00239 * 0.02562 * 3 2 1 5 5 C 1.47753 * 119.99518 * 180.02562 * 3 2 1 6 6 C 1.39736 * 120.06509 * 0.02562 * 5 3 2 7 7 C 1.38289 * 120.12555 * 180.02562 * 6 5 3 8 8 F 1.35106 * 119.87272 * 180.02562 * 7 6 5 9 9 C 1.38306 * 120.25504 * 0.02562 * 7 6 5 10 10 C 1.39710 * 120.12209 * 0.02562 * 9 7 6 11 11 C 1.47752 * 120.06118 * 179.97438 * 10 9 7 12 12 O 1.21590 * 120.00154 * 128.58447 * 11 10 9 13 13 N 1.34781 * 119.99890 * 308.58936 * 11 10 9 14 14 C 1.36878 * 119.99780 * 184.51064 * 13 11 10 15 15 H 1.07997 * 119.99667 * 11.33461 * 14 13 11 16 16 C 1.39038 * 119.99806 * 191.33620 * 14 13 11 17 17 N 1.31363 * 120.00114 * 12.45971 * 16 14 13 18 18 Si 1.86801 * 119.99906 * 192.46014 * 16 14 13 19 19 H 1.48492 * 109.47336 * 60.00090 * 18 16 14 20 20 H 1.48508 * 109.47152 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47038 * 299.99733 * 18 16 14 22 22 C 1.46497 * 120.00250 * 4.50553 * 13 11 10 23 23 C 1.50696 * 109.46942 * 92.65367 * 22 13 11 24 24 O 1.20825 * 120.00382 * 359.97438 * 23 22 13 25 25 O 1.34234 * 119.99931 * 180.02562 * 23 22 13 26 26 C 1.39329 * 120.06184 * 180.02562 * 5 3 2 27 27 H 1.08996 * 109.47354 * 59.99654 * 1 2 3 28 28 H 1.08992 * 109.46957 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46847 * 299.99805 * 1 2 3 30 30 H 1.08000 * 119.94074 * 0.27742 * 6 5 3 31 31 H 1.08001 * 119.93435 * 179.97438 * 9 7 6 32 32 H 0.97007 * 119.99944 * 179.97438 * 17 16 14 33 33 H 1.08993 * 109.47011 * 212.65779 * 22 13 11 34 34 H 1.09005 * 109.46686 * 332.65545 * 22 13 11 35 35 H 0.96700 * 117.00026 * 179.97438 * 25 23 22 36 36 H 1.08004 * 120.12430 * 0.02562 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5390 1.2776 -0.0006 6 6 4.3013 0.1065 -0.0017 7 6 5.6824 0.1773 -0.0017 8 9 6.4145 -0.9582 -0.0032 9 6 6.3171 1.4062 -0.0001 10 6 5.5652 2.5837 0.0021 11 6 6.2447 3.8957 0.0044 12 8 5.9411 4.7390 -0.8172 13 7 7.2012 4.1576 0.9171 14 6 7.7655 5.4031 0.9789 15 1 7.3260 6.2229 0.4301 16 6 8.9046 5.6129 1.7481 17 7 9.5800 4.5874 2.2148 18 14 9.4744 7.3530 2.1180 19 1 8.4069 8.0778 2.8528 20 1 10.7037 7.3050 2.9499 21 1 9.7663 8.0594 0.8447 22 6 7.6368 3.1094 1.8432 23 6 8.8242 2.3867 1.2613 24 8 9.2615 2.7134 0.1833 25 8 9.3956 1.3794 1.9400 26 6 4.1729 2.5183 0.0000 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.8111 -0.8558 -0.0066 31 1 7.3960 1.4554 0.0004 32 1 10.3749 4.7338 2.7512 33 1 7.9163 3.5594 2.7958 34 1 6.8223 2.4022 2.0005 35 1 10.1544 0.9459 1.5261 36 1 3.5877 3.4260 0.0012 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598936196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:13 Heat of formation + Delta-G solvation = -221.342811 kcal Electronic energy + Delta-G solvation = -27928.734980 eV Core-core repulsion = 23486.178518 eV Total energy + Delta-G solvation = -4442.556462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.089 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.06858 -41.97591 -41.44611 -40.31512 -39.12556 -37.55692 -37.15739 -36.41464 -34.10669 -32.83899 -31.86937 -29.69234 -28.72523 -27.32016 -25.57091 -24.59052 -22.91438 -22.43835 -21.33703 -19.38774 -19.10077 -18.77164 -18.61175 -18.12569 -17.56514 -17.52855 -17.44330 -17.15083 -16.89305 -16.72946 -16.43996 -16.14160 -15.99033 -15.25998 -14.80258 -14.63465 -14.47013 -14.34019 -13.74777 -13.65381 -13.55717 -13.27151 -13.18487 -13.05264 -12.92379 -12.68974 -12.49030 -12.19171 -12.13656 -11.84627 -11.82891 -11.60735 -11.05835 -10.82585 -10.39792 -10.11008 -10.03233 -8.52391 -6.06852 -0.77840 -0.29029 1.08520 1.36223 1.40718 1.46389 1.52486 1.62099 1.80296 2.14554 2.32202 2.45745 2.71803 2.85519 3.08347 3.38931 3.51457 3.74521 3.75584 3.84157 4.12989 4.21528 4.35835 4.39250 4.47076 4.64950 4.74434 4.75454 4.84274 4.86969 4.96248 5.19576 5.34829 5.41574 5.82712 5.91849 6.24248 6.53912 6.93840 7.13216 7.38438 7.70232 8.51213 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016626 B = 0.004168 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.676797 B = 6716.195682 C = 7954.978848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.346 6.346 3 C 0.522 3.478 4 O -0.525 6.525 5 C -0.098 4.098 6 C -0.059 4.059 7 C 0.099 3.901 8 F -0.124 7.124 9 C -0.108 4.108 10 C -0.091 4.091 11 C 0.474 3.526 12 O -0.613 6.613 13 N -0.424 5.424 14 C -0.335 4.335 15 H 0.088 0.912 16 C 0.003 3.997 17 N -0.894 5.894 18 Si 1.003 2.997 19 H -0.261 1.261 20 H -0.268 1.268 21 H -0.281 1.281 22 C 0.138 3.862 23 C 0.508 3.492 24 O -0.554 6.554 25 O -0.516 6.516 26 C -0.026 4.026 27 H 0.063 0.937 28 H 0.140 0.860 29 H 0.065 0.935 30 H 0.193 0.807 31 H 0.127 0.873 32 H 0.281 0.719 33 H 0.132 0.868 34 H 0.106 0.894 35 H 0.414 0.586 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.341 -14.840 3.015 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.262 6.262 3 C 0.367 3.633 4 O -0.415 6.415 5 C -0.099 4.099 6 C -0.078 4.078 7 C 0.080 3.920 8 F -0.103 7.103 9 C -0.128 4.128 10 C -0.095 4.095 11 C 0.264 3.736 12 O -0.500 6.500 13 N -0.140 5.140 14 C -0.462 4.462 15 H 0.105 0.895 16 C -0.198 4.198 17 N -0.534 5.534 18 Si 0.826 3.174 19 H -0.186 1.186 20 H -0.193 1.193 21 H -0.207 1.207 22 C 0.013 3.987 23 C 0.351 3.649 24 O -0.444 6.444 25 O -0.328 6.328 26 C -0.045 4.045 27 H 0.082 0.918 28 H 0.158 0.842 29 H 0.084 0.916 30 H 0.210 0.790 31 H 0.145 0.855 32 H 0.092 0.908 33 H 0.150 0.850 34 H 0.124 0.876 35 H 0.274 0.726 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.709 -13.932 2.668 17.773 hybrid contribution 1.366 0.827 -0.387 1.643 sum -9.343 -13.105 2.280 16.255 Atomic orbital electron populations 1.23683 0.73636 1.06295 1.02871 1.86518 1.25643 1.30457 1.83592 1.20785 0.88216 0.82012 0.72262 1.90868 1.66950 1.37152 1.46562 1.18682 0.89936 0.93168 1.08150 1.21703 0.90637 1.00477 0.94978 1.17149 0.89514 0.81145 1.04186 1.91560 1.77159 1.47636 1.93933 1.21711 1.01202 0.91219 0.98677 1.19547 0.93952 0.92644 1.03337 1.18338 0.84870 0.87691 0.82721 1.90614 1.69436 1.49645 1.40301 1.43502 1.31764 1.10463 1.28289 1.19796 1.10400 0.86148 1.29862 0.89455 1.26048 0.94235 1.03837 0.95659 1.69550 1.17578 1.31353 1.34939 0.84840 0.78009 0.76382 0.78178 1.18564 1.19258 1.20681 1.21066 0.92325 0.89752 0.95595 1.23364 0.84334 0.75484 0.81689 1.90624 1.64030 1.64595 1.25128 1.84447 1.48480 1.46656 1.53188 1.21217 0.92130 0.98224 0.92975 0.91795 0.84153 0.91611 0.78975 0.85499 0.90812 0.85013 0.87648 0.72607 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.35 -6.42 9.81 -56.23 -0.55 -6.97 16 3 C 0.52 13.25 7.90 70.34 0.56 13.80 16 4 O -0.52 -16.49 16.13 19.96 0.32 -16.17 16 5 C -0.10 -2.61 5.87 -20.14 -0.12 -2.73 16 6 C -0.06 -1.30 9.59 22.64 0.22 -1.08 16 7 C 0.10 2.65 7.28 22.30 0.16 2.81 16 8 F -0.12 -3.13 17.26 44.97 0.78 -2.36 16 9 C -0.11 -3.74 7.63 22.64 0.17 -3.56 16 10 C -0.09 -3.59 4.80 -20.13 -0.10 -3.69 16 11 C 0.47 24.07 7.15 86.76 0.62 24.69 16 12 O -0.61 -35.90 16.68 -4.00 -0.07 -35.97 16 13 N -0.42 -21.75 2.12 -643.00 -1.36 -23.11 16 14 C -0.33 -18.62 9.43 84.10 0.79 -17.82 16 15 H 0.09 5.17 7.27 -2.91 -0.02 5.15 16 16 C 0.00 0.16 5.18 84.95 0.44 0.60 16 17 N -0.89 -44.34 8.21 21.68 0.18 -44.17 16 18 Si 1.00 41.24 29.57 68.60 2.03 43.27 16 19 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 20 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 22 C 0.14 5.96 4.80 85.63 0.41 6.37 16 23 C 0.51 21.92 3.83 71.23 0.27 22.20 16 24 O -0.55 -28.52 16.20 21.97 0.36 -28.16 16 25 O -0.52 -17.33 13.42 -51.46 -0.69 -18.02 16 26 C -0.03 -0.89 9.28 22.81 0.21 -0.68 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.19 2.73 7.60 -2.91 -0.02 2.71 16 31 H 0.13 4.88 4.39 -2.91 -0.01 4.86 16 32 H 0.28 13.16 8.31 -92.70 -0.77 12.39 16 33 H 0.13 5.87 6.28 -2.39 -0.02 5.85 16 34 H 0.11 3.82 5.79 -2.38 -0.01 3.81 16 35 H 0.41 10.36 9.10 -74.06 -0.67 9.69 16 36 H 0.14 5.06 7.64 -2.91 -0.02 5.03 16 Total: -1.00 -74.25 324.80 6.34 -67.91 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.51 Total: 21.30 kcal Atomic # 6 Polarization: 37.61 SS G_CDS: 4.84 Total: 42.45 kcal Atomic # 7 Polarization: -66.09 SS G_CDS: -1.18 Total: -67.27 kcal Atomic # 8 Polarization: -104.67 SS G_CDS: -0.63 Total: -105.30 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.78 Total: -2.36 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Total: -74.25 6.34 -67.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598936196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.433 kcal (2) G-P(sol) polarization free energy of solvation -74.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds