Wall clock time and date at job start Tue Mar 31 2020 14:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38256 * 119.99333 * 2 1 4 4 C 1.38223 * 120.02735 * 179.72254 * 3 2 1 5 5 C 1.38234 * 120.01199 * 0.55378 * 4 3 2 6 6 C 1.50694 * 120.00909 * 179.74327 * 5 4 3 7 7 C 1.50700 * 109.47607 * 264.72587 * 6 5 4 8 8 O 1.21295 * 119.99517 * 5.48934 * 7 6 5 9 9 N 1.34770 * 120.00701 * 185.48782 * 7 6 5 10 10 C 1.37107 * 119.99612 * 4.91329 * 9 7 6 11 11 H 1.08004 * 119.99563 * 325.41259 * 10 9 7 12 12 C 1.38951 * 120.00028 * 145.41437 * 10 9 7 13 13 N 1.31408 * 119.99928 * 337.21155 * 12 10 9 14 14 Si 1.86797 * 120.00015 * 157.21270 * 12 10 9 15 15 H 1.48506 * 109.47053 * 89.99874 * 14 12 10 16 16 H 1.48494 * 109.47167 * 209.99742 * 14 12 10 17 17 H 1.48497 * 109.47087 * 329.99925 * 14 12 10 18 18 C 1.46491 * 120.00572 * 184.91384 * 9 7 6 19 19 C 1.53000 * 109.47459 * 90.00013 * 18 9 7 20 20 C 1.50701 * 109.47262 * 180.02562 * 19 18 9 21 21 O 1.20818 * 120.00394 * 359.97438 * 20 19 18 22 22 O 1.34235 * 119.99679 * 179.97438 * 20 19 18 23 23 C 1.38335 * 119.98482 * 359.47264 * 5 4 3 24 24 Cl 1.73595 * 120.01163 * 180.27762 * 23 5 4 25 25 C 1.38188 * 119.99381 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47000 * 269.97558 * 1 2 3 27 27 H 1.08995 * 109.47247 * 29.97585 * 1 2 3 28 28 H 1.09004 * 109.47111 * 149.97946 * 1 2 3 29 29 H 1.08004 * 119.98648 * 0.02562 * 3 2 1 30 30 H 1.07998 * 119.99406 * 180.29610 * 4 3 2 31 31 H 1.08995 * 109.47349 * 144.72256 * 6 5 4 32 32 H 1.09001 * 109.47080 * 24.72301 * 6 5 4 33 33 H 0.97001 * 120.00184 * 178.02315 * 13 12 10 34 34 H 1.09007 * 109.47640 * 210.00118 * 18 9 7 35 35 H 1.09003 * 109.47175 * 329.99730 * 18 9 7 36 36 H 1.09002 * 109.46796 * 299.99894 * 19 18 9 37 37 H 1.09003 * 109.47158 * 59.99707 * 19 18 9 38 38 H 0.96700 * 116.99593 * 180.02562 * 22 20 19 39 39 H 1.08003 * 120.00828 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1982 0.0058 5 6 4.2726 0.0017 0.0000 6 6 5.7795 0.0027 0.0005 7 6 6.2825 -0.1205 -1.4147 8 8 5.4991 -0.1009 -2.3406 9 7 7.6026 -0.2524 -1.6518 10 6 8.4782 -0.3757 -0.6040 11 1 8.2915 0.1505 0.3205 12 6 9.6057 -1.1777 -0.7315 13 7 9.6279 -2.1430 -1.6228 14 14 11.0898 -0.8837 0.3641 15 1 10.9591 -1.6932 1.6023 16 1 12.3249 -1.2805 -0.3585 17 1 11.1651 0.5561 0.7196 18 6 8.1021 -0.2639 -3.0289 19 6 8.4269 1.1661 -3.4656 20 6 8.9401 1.1542 -4.8825 21 8 9.0367 0.1094 -5.4814 22 8 9.2900 2.3047 -5.4791 23 6 3.5816 -1.1967 -0.0005 24 17 4.4501 -2.6998 -0.0005 25 6 2.1978 -1.1968 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6578 2.1326 0.0004 30 1 4.1197 2.1339 0.0106 31 1 6.1432 -0.8389 0.5899 32 1 6.1421 0.9343 0.4351 33 1 10.4254 -2.6844 -1.7317 34 1 9.0037 -0.8741 -3.0834 35 1 7.3407 -0.6810 -3.6880 36 1 7.5253 1.7762 -3.4112 37 1 9.1882 1.5832 -2.8064 38 1 9.6132 2.2468 -6.3887 39 1 1.6579 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600396515.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:05 Heat of formation + Delta-G solvation = -116.372553 kcal Electronic energy + Delta-G solvation = -25165.601333 eV Core-core repulsion = 21291.766193 eV Total energy + Delta-G solvation = -3873.835140 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.85141 -39.49884 -38.26866 -36.03877 -35.81257 -34.99817 -33.37562 -31.93792 -30.82490 -30.47883 -29.08508 -25.51609 -25.16231 -23.42279 -22.55998 -21.00530 -20.30375 -19.12121 -17.78994 -16.92112 -16.20406 -16.06114 -15.74840 -15.69094 -15.44197 -15.02764 -14.52467 -14.08599 -13.81753 -13.75313 -13.54911 -12.96322 -12.83844 -12.59886 -12.47554 -12.37780 -12.19249 -11.82687 -11.38880 -11.26831 -11.20871 -11.15271 -11.04951 -10.92321 -10.74553 -10.71540 -10.44924 -10.27685 -10.12864 -10.01373 -9.21674 -8.66360 -8.48292 -8.11884 -7.61423 -6.40814 -4.11716 1.45442 1.52464 2.59422 2.66864 3.08268 3.19752 3.21869 3.40967 3.79771 3.88819 4.10458 4.78719 4.91211 4.94476 4.98851 5.18291 5.30746 5.43121 5.56346 5.60089 5.67521 5.78178 5.79700 5.91277 5.98847 6.08073 6.15836 6.25315 6.35239 6.42390 6.49005 6.65313 6.79641 6.82044 6.89480 7.08279 7.30256 7.45296 7.84310 8.27790 8.32013 9.02182 9.43715 9.87069 10.59353 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.011859 B = 0.004299 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.529903 B = 6512.112093 C = 7863.088915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.090 4.090 3 C -0.119 4.119 4 C -0.096 4.096 5 C -0.041 4.041 6 C -0.093 4.093 7 C 0.482 3.518 8 O -0.593 6.593 9 N -0.439 5.439 10 C -0.349 4.349 11 H 0.092 0.908 12 C 0.046 3.954 13 N -0.848 5.848 14 Si 0.908 3.092 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.268 1.268 18 C 0.123 3.877 19 C -0.124 4.124 20 C 0.482 3.518 21 O -0.513 6.513 22 O -0.525 6.525 23 C -0.019 4.019 24 Cl -0.061 7.061 25 C -0.114 4.114 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.271 0.729 34 H 0.118 0.882 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.401 0.599 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.815 6.522 3.423 11.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.091 4.091 3 C -0.137 4.137 4 C -0.114 4.114 5 C -0.042 4.042 6 C -0.133 4.133 7 C 0.271 3.729 8 O -0.478 6.478 9 N -0.158 5.158 10 C -0.476 4.476 11 H 0.110 0.890 12 C -0.161 4.161 13 N -0.483 5.483 14 Si 0.734 3.266 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.192 1.192 18 C -0.002 4.002 19 C -0.162 4.162 20 C 0.325 3.675 21 O -0.401 6.401 22 O -0.337 6.337 23 C -0.045 4.045 24 Cl -0.032 7.032 25 C -0.133 4.133 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.123 0.877 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.136 0.864 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.123 0.877 38 H 0.258 0.742 39 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.097 5.929 3.152 11.307 hybrid contribution 1.305 -0.089 -0.126 1.314 sum -7.791 5.840 3.026 10.196 Atomic orbital electron populations 1.20732 0.91030 1.02706 1.02062 1.19713 0.95902 0.92586 1.00870 1.20981 0.94058 0.97390 1.01247 1.20931 0.93936 0.97136 0.99443 1.19479 0.95802 0.91478 0.97449 1.20546 0.89783 1.04880 0.98088 1.20105 0.82698 0.80579 0.89547 1.90565 1.55558 1.55975 1.45729 1.43335 1.04045 1.63066 1.05313 1.19386 1.04541 1.28274 0.95383 0.88994 1.25322 1.00040 0.93221 0.97553 1.69961 1.28802 1.14917 1.34629 0.86256 0.81171 0.79125 0.80091 1.20144 1.20726 1.19237 1.21198 1.03256 0.92004 0.83698 1.21855 1.02703 1.03630 0.88060 1.23793 0.73381 0.80507 0.89865 1.90704 1.50473 1.32880 1.66014 1.84591 1.77747 1.37668 1.33669 1.20794 0.92157 0.87408 1.04175 1.98385 1.76649 1.31504 1.96658 1.20807 0.91837 0.98354 1.02295 0.91353 0.91571 0.91637 0.85975 0.85507 0.87689 0.89105 0.91867 0.86435 0.91548 0.88701 0.87699 0.74152 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 36.01 0.36 -0.67 16 2 C -0.09 -1.20 5.88 -104.63 -0.62 -1.81 16 3 C -0.12 -1.59 9.70 -39.58 -0.38 -1.97 16 4 C -0.10 -1.48 9.68 -39.59 -0.38 -1.86 16 5 C -0.04 -0.73 4.38 -104.59 -0.46 -1.19 16 6 C -0.09 -1.81 3.93 -29.04 -0.11 -1.92 16 7 C 0.48 11.24 7.61 -10.99 -0.08 11.15 16 8 O -0.59 -15.27 15.60 5.54 0.09 -15.18 16 9 N -0.44 -10.56 2.54 -114.81 -0.29 -10.86 16 10 C -0.35 -8.33 8.58 -14.93 -0.13 -8.46 16 11 H 0.09 2.05 7.16 -52.48 -0.38 1.68 16 12 C 0.05 1.11 4.95 -17.47 -0.09 1.03 16 13 N -0.85 -22.18 11.34 55.50 0.63 -21.55 16 14 Si 0.91 18.69 29.61 -169.99 -5.03 13.66 16 15 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 16 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 18 C 0.12 2.92 4.34 -4.05 -0.02 2.90 16 19 C -0.12 -2.41 6.13 -27.88 -0.17 -2.58 16 20 C 0.48 8.88 8.33 36.01 0.30 9.18 16 21 O -0.51 -11.05 16.74 -18.74 -0.31 -11.37 16 22 O -0.53 -7.50 13.42 -39.27 -0.53 -8.02 16 23 C -0.02 -0.33 6.31 -39.50 -0.25 -0.58 16 24 Cl -0.06 -1.13 27.40 -51.86 -1.42 -2.56 16 25 C -0.11 -1.71 9.49 -39.55 -0.38 -2.09 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 28 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 29 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 30 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 31 H 0.10 2.10 6.84 -51.93 -0.36 1.75 16 32 H 0.09 1.55 7.93 -51.93 -0.41 1.14 16 33 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 34 H 0.12 3.05 5.32 -51.92 -0.28 2.78 16 35 H 0.07 1.72 7.32 -51.93 -0.38 1.34 16 36 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 37 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 38 H 0.40 3.79 9.10 45.56 0.41 4.21 16 39 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16 LS Contribution 354.05 15.07 5.34 5.34 Total: -1.00 -31.34 354.05 -7.84 -39.17 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -3.90 Total: 10.24 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.41 Total: 1.13 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.34 Total: -32.40 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.75 Total: -34.57 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.42 Total: -2.56 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.34 -7.84 -39.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600396515.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.199 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds