Wall clock time and date at job start Tue Mar 31 2020 14:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38256 * 119.99333 * 2 1 4 4 C 1.38223 * 120.02735 * 179.72254 * 3 2 1 5 5 C 1.38234 * 120.01199 * 0.55378 * 4 3 2 6 6 C 1.50694 * 120.00909 * 179.74327 * 5 4 3 7 7 C 1.50700 * 109.47607 * 264.72587 * 6 5 4 8 8 O 1.21295 * 119.99517 * 5.48934 * 7 6 5 9 9 N 1.34770 * 120.00701 * 185.48782 * 7 6 5 10 10 C 1.37107 * 119.99612 * 4.91329 * 9 7 6 11 11 H 1.08004 * 119.99563 * 325.41259 * 10 9 7 12 12 C 1.38951 * 120.00028 * 145.41437 * 10 9 7 13 13 N 1.31408 * 119.99928 * 337.21155 * 12 10 9 14 14 Si 1.86797 * 120.00015 * 157.21270 * 12 10 9 15 15 H 1.48506 * 109.47053 * 89.99874 * 14 12 10 16 16 H 1.48494 * 109.47167 * 209.99742 * 14 12 10 17 17 H 1.48497 * 109.47087 * 329.99925 * 14 12 10 18 18 C 1.46491 * 120.00572 * 184.91384 * 9 7 6 19 19 C 1.53000 * 109.47459 * 90.00013 * 18 9 7 20 20 C 1.50701 * 109.47262 * 180.02562 * 19 18 9 21 21 O 1.20818 * 120.00394 * 359.97438 * 20 19 18 22 22 O 1.34235 * 119.99679 * 179.97438 * 20 19 18 23 23 C 1.38335 * 119.98482 * 359.47264 * 5 4 3 24 24 Cl 1.73595 * 120.01163 * 180.27762 * 23 5 4 25 25 C 1.38188 * 119.99381 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47000 * 269.97558 * 1 2 3 27 27 H 1.08995 * 109.47247 * 29.97585 * 1 2 3 28 28 H 1.09004 * 109.47111 * 149.97946 * 1 2 3 29 29 H 1.08004 * 119.98648 * 0.02562 * 3 2 1 30 30 H 1.07998 * 119.99406 * 180.29610 * 4 3 2 31 31 H 1.08995 * 109.47349 * 144.72256 * 6 5 4 32 32 H 1.09001 * 109.47080 * 24.72301 * 6 5 4 33 33 H 0.97001 * 120.00184 * 178.02315 * 13 12 10 34 34 H 1.09007 * 109.47640 * 210.00118 * 18 9 7 35 35 H 1.09003 * 109.47175 * 329.99730 * 18 9 7 36 36 H 1.09002 * 109.46796 * 299.99894 * 19 18 9 37 37 H 1.09003 * 109.47158 * 59.99707 * 19 18 9 38 38 H 0.96700 * 116.99593 * 180.02562 * 22 20 19 39 39 H 1.08003 * 120.00828 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1982 0.0058 5 6 4.2726 0.0017 0.0000 6 6 5.7795 0.0027 0.0005 7 6 6.2825 -0.1205 -1.4147 8 8 5.4991 -0.1009 -2.3406 9 7 7.6026 -0.2524 -1.6518 10 6 8.4782 -0.3757 -0.6040 11 1 8.2915 0.1505 0.3205 12 6 9.6057 -1.1777 -0.7315 13 7 9.6279 -2.1430 -1.6228 14 14 11.0898 -0.8837 0.3641 15 1 10.9591 -1.6932 1.6023 16 1 12.3249 -1.2805 -0.3585 17 1 11.1651 0.5561 0.7196 18 6 8.1021 -0.2639 -3.0289 19 6 8.4269 1.1661 -3.4656 20 6 8.9401 1.1542 -4.8825 21 8 9.0367 0.1094 -5.4814 22 8 9.2900 2.3047 -5.4791 23 6 3.5816 -1.1967 -0.0005 24 17 4.4501 -2.6998 -0.0005 25 6 2.1978 -1.1968 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6578 2.1326 0.0004 30 1 4.1197 2.1339 0.0106 31 1 6.1432 -0.8389 0.5899 32 1 6.1421 0.9343 0.4351 33 1 10.4254 -2.6844 -1.7317 34 1 9.0037 -0.8741 -3.0834 35 1 7.3407 -0.6810 -3.6880 36 1 7.5253 1.7762 -3.4112 37 1 9.1882 1.5832 -2.8064 38 1 9.6132 2.2468 -6.3887 39 1 1.6579 -2.1322 -0.0014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600396515.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:05 Heat of formation + Delta-G solvation = -134.561540 kcal Electronic energy + Delta-G solvation = -25166.390067 eV Core-core repulsion = 21291.766193 eV Total energy + Delta-G solvation = -3874.623874 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.36532 -40.85864 -39.84179 -37.38021 -37.24145 -36.78089 -34.64579 -33.76419 -32.49199 -31.63180 -30.34097 -27.09047 -26.72442 -24.96809 -23.71375 -22.31500 -21.71194 -20.93756 -19.28465 -18.56549 -17.90543 -17.56695 -17.13945 -16.95736 -16.93964 -16.34222 -16.16596 -15.69349 -15.46770 -14.89416 -14.67732 -14.41056 -14.33619 -14.14716 -13.70284 -13.65120 -13.42189 -13.26311 -13.03288 -12.80824 -12.58559 -12.56281 -12.51998 -12.43533 -12.12742 -12.07869 -12.04459 -11.88882 -11.67043 -11.57627 -11.05445 -10.41366 -9.72352 -9.52671 -9.34625 -8.26514 -6.03023 0.26933 0.36798 1.18436 1.28482 1.44365 1.51810 1.62694 1.95051 2.09478 2.39178 2.65627 3.08839 3.20282 3.78492 3.87049 4.00460 4.06979 4.13209 4.28738 4.37109 4.44119 4.54022 4.58233 4.68404 4.76248 4.80721 4.90235 4.93293 4.99258 5.04227 5.29162 5.32474 5.38357 5.52293 5.54642 5.59296 5.60591 5.97661 6.01064 6.41779 6.99573 7.15049 7.59700 8.02882 8.74714 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.011859 B = 0.004299 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.529903 B = 6512.112093 C = 7863.088915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.084 4.084 3 C -0.115 4.115 4 C -0.102 4.102 5 C -0.072 4.072 6 C -0.082 4.082 7 C 0.475 3.525 8 O -0.623 6.623 9 N -0.450 5.450 10 C -0.354 4.354 11 H 0.109 0.891 12 C 0.002 3.998 13 N -0.890 5.890 14 Si 0.976 3.024 15 H -0.275 1.275 16 H -0.288 1.288 17 H -0.250 1.250 18 C 0.127 3.873 19 C -0.114 4.114 20 C 0.494 3.506 21 O -0.551 6.551 22 O -0.506 6.506 23 C -0.041 4.041 24 Cl -0.086 7.086 25 C -0.125 4.125 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.159 0.841 30 H 0.144 0.856 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.269 0.731 34 H 0.095 0.905 35 H 0.031 0.969 36 H 0.103 0.897 37 H 0.120 0.880 38 H 0.426 0.574 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.884 9.154 4.534 14.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.085 4.085 3 C -0.133 4.133 4 C -0.120 4.120 5 C -0.073 4.073 6 C -0.122 4.122 7 C 0.265 3.735 8 O -0.510 6.510 9 N -0.168 5.168 10 C -0.481 4.481 11 H 0.127 0.873 12 C -0.201 4.201 13 N -0.527 5.527 14 Si 0.800 3.200 15 H -0.200 1.200 16 H -0.214 1.214 17 H -0.174 1.174 18 C 0.002 3.998 19 C -0.153 4.153 20 C 0.337 3.663 21 O -0.442 6.442 22 O -0.320 6.320 23 C -0.068 4.068 24 Cl -0.057 7.057 25 C -0.143 4.143 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.176 0.824 30 H 0.162 0.838 31 H 0.111 0.889 32 H 0.131 0.869 33 H 0.079 0.921 34 H 0.113 0.887 35 H 0.050 0.950 36 H 0.121 0.879 37 H 0.138 0.862 38 H 0.288 0.712 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.163 8.604 4.262 13.981 hybrid contribution 1.509 -0.856 -0.533 1.814 sum -8.654 7.748 3.729 12.200 Atomic orbital electron populations 1.20825 0.87978 1.03915 1.03622 1.20221 0.98050 0.91746 0.98435 1.21426 0.93380 0.99013 0.99456 1.21221 0.95147 0.96760 0.98914 1.19513 0.94914 0.92709 1.00133 1.20426 0.91341 1.05365 0.95047 1.20787 0.82163 0.79552 0.90999 1.90526 1.56173 1.57200 1.47143 1.43577 1.04655 1.63187 1.05406 1.19797 1.04400 1.28053 0.95832 0.87344 1.26186 1.02523 0.92630 0.98751 1.70099 1.29401 1.16306 1.36937 0.85205 0.77155 0.79755 0.77936 1.20040 1.21420 1.17375 1.20949 1.00892 0.94383 0.83537 1.21602 1.03624 1.00689 0.89370 1.23420 0.72683 0.80768 0.89393 1.90705 1.52234 1.34486 1.66779 1.84503 1.76950 1.35013 1.35510 1.21057 0.93230 0.86491 1.06011 1.98366 1.77392 1.33043 1.96905 1.21094 0.90902 1.00048 1.02277 0.89448 0.89833 0.91042 0.82354 0.83847 0.88931 0.86865 0.92141 0.88744 0.94993 0.87851 0.86221 0.71197 0.84154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.62 10.01 71.24 0.71 -0.91 16 2 C -0.08 -2.00 5.88 -19.87 -0.12 -2.12 16 3 C -0.11 -2.71 9.70 22.27 0.22 -2.50 16 4 C -0.10 -2.96 9.68 22.27 0.22 -2.74 16 5 C -0.07 -2.55 4.38 -19.84 -0.09 -2.64 16 6 C -0.08 -3.21 3.93 29.10 0.11 -3.10 16 7 C 0.47 22.62 7.61 87.66 0.67 23.29 16 8 O -0.62 -33.04 15.60 -3.08 -0.05 -33.08 16 9 N -0.45 -22.15 2.54 -635.54 -1.61 -23.77 16 10 C -0.35 -16.98 8.58 84.04 0.72 -16.26 16 11 H 0.11 4.74 7.16 -2.91 -0.02 4.72 16 12 C 0.00 0.11 4.95 84.93 0.42 0.53 16 13 N -0.89 -48.21 11.34 21.66 0.25 -47.96 16 14 Si 0.98 38.20 29.61 68.60 2.03 40.23 16 15 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 16 H -0.29 -11.51 7.11 99.48 0.71 -10.80 16 17 H -0.25 -9.02 7.11 99.48 0.71 -8.32 16 18 C 0.13 6.27 4.34 86.38 0.37 6.65 16 19 C -0.11 -4.44 6.13 29.85 0.18 -4.26 16 20 C 0.49 17.95 8.33 71.24 0.59 18.55 16 21 O -0.55 -24.18 16.74 21.99 0.37 -23.81 16 22 O -0.51 -13.30 13.42 -51.46 -0.69 -13.99 16 23 C -0.04 -1.47 6.31 22.33 0.14 -1.33 16 24 Cl -0.09 -3.32 27.40 -2.72 -0.07 -3.40 16 25 C -0.12 -3.61 9.49 22.29 0.21 -3.40 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 28 H 0.07 1.03 8.09 -2.39 -0.02 1.01 16 29 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 30 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 31 H 0.09 3.80 6.84 -2.39 -0.02 3.79 16 32 H 0.11 3.77 7.93 -2.39 -0.02 3.75 16 33 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 34 H 0.09 5.15 5.32 -2.38 -0.01 5.14 16 35 H 0.03 1.75 7.32 -2.39 -0.02 1.73 16 36 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 37 H 0.12 4.29 8.14 -2.39 -0.02 4.27 16 38 H 0.43 6.92 9.10 -74.06 -0.67 6.25 16 39 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -70.90 354.05 5.01 -65.90 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.42 Total: 30.12 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 4.37 Total: 9.76 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -1.37 Total: -71.73 kcal Atomic # 8 Polarization: -70.51 SS G_CDS: -0.37 Total: -70.88 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.23 kcal Atomic # 17 Polarization: -3.32 SS G_CDS: -0.07 Total: -3.40 kcal Total: -70.90 5.01 -65.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600396515.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.666 kcal (2) G-P(sol) polarization free energy of solvation -70.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds