Wall clock time and date at job start Tue Mar 31 2020 14:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38239 * 120.00745 * 2 1 4 4 C 1.38215 * 120.01419 * 179.97438 * 3 2 1 5 5 C 1.38262 * 120.02747 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99202 * 179.97438 * 5 4 3 7 7 C 1.50691 * 109.47296 * 90.00157 * 6 5 4 8 8 O 1.21300 * 119.99666 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00340 * 179.97438 * 7 6 5 10 10 C 1.37096 * 119.99946 * 0.02562 * 9 7 6 11 11 H 1.07996 * 120.00106 * 34.21751 * 10 9 7 12 12 C 1.38948 * 120.00174 * 214.22656 * 10 9 7 13 13 N 1.31420 * 119.99632 * 21.77688 * 12 10 9 14 14 Si 1.86793 * 120.00218 * 201.78100 * 12 10 9 15 15 H 1.48496 * 109.47460 * 59.99619 * 14 12 10 16 16 H 1.48502 * 109.47310 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47265 * 299.99639 * 14 12 10 18 18 C 1.46500 * 120.00096 * 179.72367 * 9 7 6 19 19 C 1.53002 * 109.47274 * 273.67803 * 18 9 7 20 20 C 1.50697 * 109.47117 * 179.97438 * 19 18 9 21 21 O 1.20826 * 120.00031 * 0.02562 * 20 19 18 22 22 O 1.34233 * 120.00023 * 179.97438 * 20 19 18 23 23 C 1.38189 * 120.01252 * 0.23395 * 5 4 3 24 24 C 1.38325 * 120.00896 * 179.97438 * 2 1 3 25 25 Cl 1.73600 * 120.01189 * 0.04870 * 24 2 1 26 26 H 1.08994 * 109.47334 * 90.00053 * 1 2 3 27 27 H 1.09003 * 109.47053 * 210.00423 * 1 2 3 28 28 H 1.09007 * 109.47268 * 329.99789 * 1 2 3 29 29 H 1.08002 * 119.98828 * 359.95311 * 3 2 1 30 30 H 1.08004 * 119.98496 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.47304 * 329.99676 * 6 5 4 32 32 H 1.09003 * 109.46851 * 210.00611 * 6 5 4 33 33 H 0.97000 * 119.99450 * 180.02562 * 13 12 10 34 34 H 1.09001 * 109.47039 * 33.67728 * 18 9 7 35 35 H 1.09001 * 109.47263 * 153.67697 * 18 9 7 36 36 H 1.09001 * 109.47026 * 299.99933 * 19 18 9 37 37 H 1.09001 * 109.47062 * 59.99771 * 19 18 9 38 38 H 0.96700 * 116.99783 * 179.97438 * 22 20 19 39 39 H 1.08002 * 120.00856 * 179.74270 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2725 0.0003 0.0005 6 6 5.7795 0.0014 0.0005 7 6 6.2819 0.0017 1.4213 8 8 5.4936 0.0006 2.3432 9 7 7.6069 0.0022 1.6676 10 6 8.4978 0.0029 0.6255 11 1 8.2607 0.5290 -0.2873 12 6 9.7058 -0.6735 0.7438 13 7 9.8340 -1.6402 1.6248 14 14 11.1474 -0.2088 -0.3494 15 1 11.5078 1.2127 -0.1157 16 1 12.3113 -1.0733 -0.0280 17 1 10.7695 -0.3960 -1.7732 18 6 8.0952 0.0086 3.0488 19 6 8.1788 1.4506 3.5535 20 6 8.6805 1.4571 4.9745 21 8 8.9446 0.4154 5.5267 22 8 8.8350 2.6203 5.6264 23 6 3.5826 -1.1970 -0.0049 24 6 2.1988 -1.1978 0.0005 25 17 1.3313 -2.7016 -0.0001 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3634 0.8900 0.5139 29 1 1.6583 2.1324 -0.0008 30 1 4.1202 2.1328 0.0001 31 1 6.1422 0.8916 -0.5133 32 1 6.1435 -0.8883 -0.5134 33 1 10.6774 -2.1121 1.7076 34 1 7.4097 -0.5578 3.6791 35 1 9.0845 -0.4475 3.0866 36 1 8.8643 2.0170 2.9231 37 1 7.1895 1.9066 3.5157 38 1 9.1591 2.5739 6.5362 39 1 4.1232 -2.1320 -0.0091 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600397990.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:08 Heat of formation + Delta-G solvation = -118.104635 kcal Electronic energy + Delta-G solvation = -24860.842366 eV Core-core repulsion = 20986.932117 eV Total energy + Delta-G solvation = -3873.910249 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.87063 -39.52627 -38.35028 -36.31017 -35.81920 -35.02927 -33.42470 -31.99162 -30.87720 -30.51193 -29.09093 -25.51755 -25.20967 -23.46890 -22.59186 -21.03066 -20.33936 -19.17118 -17.81027 -16.98322 -16.22177 -16.08407 -15.77230 -15.69994 -15.43704 -15.09647 -14.56887 -14.18274 -13.98380 -13.88852 -13.53141 -12.95040 -12.84536 -12.55576 -12.45060 -12.37971 -12.22939 -11.89130 -11.41366 -11.33366 -11.29497 -11.16445 -11.11900 -11.08161 -10.79474 -10.74686 -10.51728 -10.49913 -10.15463 -10.07828 -9.24524 -8.69322 -8.54350 -8.18151 -7.68810 -6.47574 -4.18369 1.41277 1.52185 2.31470 2.65534 3.05518 3.16055 3.16603 3.39471 3.76536 3.85314 4.04757 4.74805 4.88775 4.90303 4.94340 5.21501 5.30351 5.57025 5.58576 5.59404 5.69948 5.75223 5.77818 5.87407 5.96217 6.10657 6.17900 6.23534 6.32832 6.38815 6.45847 6.56775 6.80034 6.85296 6.86822 7.07885 7.25203 7.39882 7.77041 8.23129 8.29664 8.96090 9.37349 9.80651 10.53380 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.012135 B = 0.003578 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2306.741964 B = 7824.598563 C = 9022.202409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.110 4.110 4 C -0.100 4.100 5 C -0.036 4.036 6 C -0.087 4.087 7 C 0.473 3.527 8 O -0.595 6.595 9 N -0.437 5.437 10 C -0.352 4.352 11 H 0.094 0.906 12 C 0.046 3.954 13 N -0.850 5.850 14 Si 0.913 3.087 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.271 1.271 18 C 0.125 3.875 19 C -0.125 4.125 20 C 0.483 3.517 21 O -0.514 6.514 22 O -0.525 6.525 23 C -0.093 4.093 24 C -0.033 4.033 25 Cl -0.081 7.081 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.273 0.727 34 H 0.064 0.936 35 H 0.119 0.881 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.401 0.599 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.155 5.927 -3.384 11.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.129 4.129 4 C -0.118 4.118 5 C -0.037 4.037 6 C -0.126 4.126 7 C 0.262 3.738 8 O -0.481 6.481 9 N -0.156 5.156 10 C -0.479 4.479 11 H 0.111 0.889 12 C -0.162 4.162 13 N -0.485 5.485 14 Si 0.739 3.261 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.196 1.196 18 C 0.001 3.999 19 C -0.164 4.164 20 C 0.325 3.675 21 O -0.401 6.401 22 O -0.337 6.337 23 C -0.112 4.112 24 C -0.060 4.060 25 Cl -0.052 7.052 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.136 0.864 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.259 0.741 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.519 5.345 -3.116 11.353 hybrid contribution 1.151 0.010 0.137 1.159 sum -8.369 5.355 -2.978 10.372 Atomic orbital electron populations 1.20800 0.90829 1.03077 1.02342 1.19626 0.96271 0.91540 1.01793 1.20859 0.94055 0.96701 1.01244 1.21071 0.93918 0.97903 0.98954 1.19540 0.95466 0.92257 0.96426 1.20478 0.89802 1.04970 0.97371 1.20239 0.82966 0.80725 0.89857 1.90580 1.55645 1.55663 1.46183 1.43396 1.03594 1.63344 1.05241 1.19404 0.98701 1.33136 0.96668 0.88877 1.25375 0.99835 0.93523 0.97462 1.69918 1.26398 1.17322 1.34878 0.86222 0.80676 0.78836 0.80338 1.19732 1.20853 1.19571 1.21211 1.04377 0.91176 0.83130 1.21862 1.02999 1.03704 0.87797 1.23788 0.73619 0.80490 0.89616 1.90706 1.47054 1.33529 1.68833 1.84591 1.79877 1.36943 1.32244 1.20901 0.91610 0.99002 0.99699 1.20686 0.92200 0.86099 1.06983 1.98327 1.77004 1.32830 1.97046 0.91182 0.91139 0.91464 0.85601 0.85728 0.88924 0.88199 0.91654 0.91769 0.86360 0.87822 0.88475 0.74136 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.62 36.00 0.35 -0.86 16 2 C -0.09 -1.26 5.88 -104.59 -0.62 -1.88 16 3 C -0.11 -1.48 9.70 -39.59 -0.38 -1.87 16 4 C -0.10 -1.51 9.70 -39.58 -0.38 -1.90 16 5 C -0.04 -0.62 4.37 -104.63 -0.46 -1.07 16 6 C -0.09 -1.58 4.49 -29.04 -0.13 -1.71 16 7 C 0.47 10.69 7.61 -10.99 -0.08 10.60 16 8 O -0.60 -14.93 15.67 5.54 0.09 -14.84 16 9 N -0.44 -10.26 2.55 -114.81 -0.29 -10.55 16 10 C -0.35 -8.17 8.70 -14.93 -0.13 -8.30 16 11 H 0.09 2.00 6.98 -52.49 -0.37 1.64 16 12 C 0.05 1.08 4.95 -17.46 -0.09 0.99 16 13 N -0.85 -21.73 11.32 55.50 0.63 -21.11 16 14 Si 0.91 18.29 29.60 -169.99 -5.03 13.26 16 15 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 16 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 18 C 0.13 2.92 4.23 -4.04 -0.02 2.91 16 19 C -0.12 -2.41 6.12 -27.88 -0.17 -2.58 16 20 C 0.48 8.82 8.33 36.00 0.30 9.12 16 21 O -0.51 -10.96 16.74 -18.75 -0.31 -11.28 16 22 O -0.52 -7.45 13.42 -39.27 -0.53 -7.98 16 23 C -0.09 -1.57 9.49 -39.55 -0.38 -1.95 16 24 C -0.03 -0.51 6.31 -39.50 -0.25 -0.76 16 25 Cl -0.08 -1.12 27.30 -51.86 -1.42 -2.53 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.76 6.90 -51.93 -0.36 0.40 16 28 H 0.07 0.61 8.09 -51.92 -0.42 0.19 16 29 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 31 H 0.09 1.51 7.59 -51.93 -0.39 1.11 16 32 H 0.10 1.81 8.04 -51.93 -0.42 1.39 16 33 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 34 H 0.06 1.63 7.49 -51.93 -0.39 1.24 16 35 H 0.12 3.01 5.30 -51.93 -0.28 2.74 16 36 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 37 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 38 H 0.40 3.76 9.10 45.56 0.41 4.17 16 39 H 0.13 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 353.80 15.07 5.33 5.33 Total: -1.00 -30.14 353.80 -7.85 -37.98 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -3.88 Total: 10.96 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -2.44 Total: 0.75 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.34 Total: -31.65 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: -0.75 Total: -34.10 kcal Atomic # 14 Polarization: 18.29 SS G_CDS: -5.03 Total: 13.26 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.42 Total: -2.53 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.14 -7.85 -37.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600397990.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.120 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds