Wall clock time and date at job start Tue Mar 31 2020 14:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00165 * 2 1 4 4 H 1.48505 * 109.46964 * 269.99954 * 3 2 1 5 5 H 1.48500 * 109.47246 * 29.99910 * 3 2 1 6 6 H 1.48503 * 109.47178 * 150.00285 * 3 2 1 7 7 C 1.37884 * 119.99714 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99512 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00036 * 0.02562 * 7 2 1 10 10 O 1.42901 * 110.63233 * 56.89444 * 9 7 2 11 11 C 1.55142 * 110.85631 * 293.68490 * 9 7 2 12 12 C 1.54907 * 101.65176 * 205.89613 * 11 9 7 13 13 N 1.47841 * 104.80087 * 37.07038 * 12 11 9 14 14 C 1.46901 * 111.00090 * 213.63981 * 13 12 11 15 15 C 1.50700 * 109.46827 * 290.83728 * 14 13 12 16 16 C 1.38435 * 119.83616 * 90.00161 * 15 14 13 17 17 C 1.37875 * 120.18944 * 179.72367 * 16 15 14 18 18 C 1.39687 * 119.86078 * 359.97438 * 17 16 15 19 19 C 1.47636 * 120.16019 * 179.97438 * 18 17 16 20 20 O 1.21485 * 120.00015 * 179.97438 * 19 18 17 21 21 O 1.34728 * 120.00059 * 0.02562 * 19 18 17 22 22 C 1.39746 * 119.67824 * 0.02562 * 18 17 16 23 23 Cl 1.73603 * 120.09714 * 180.02562 * 22 18 17 24 24 C 1.38147 * 119.80929 * 0.02562 * 22 18 17 25 25 C 1.47453 * 108.56225 * 335.90487 * 13 12 11 26 26 H 0.97002 * 119.99517 * 359.97438 * 1 2 3 27 27 H 0.96702 * 113.99484 * 303.10893 * 10 9 7 28 28 H 1.09006 * 110.98811 * 323.98389 * 11 9 7 29 29 H 1.09001 * 110.99150 * 87.76647 * 11 9 7 30 30 H 1.09001 * 110.37208 * 278.23841 * 12 11 9 31 31 H 1.09001 * 110.37011 * 155.89935 * 12 11 9 32 32 H 1.08997 * 109.46893 * 170.84406 * 14 13 12 33 33 H 1.08999 * 109.47188 * 50.83763 * 14 13 12 34 34 H 1.08001 * 119.90166 * 359.74304 * 16 15 14 35 35 H 1.07999 * 120.06902 * 179.97438 * 17 16 15 36 36 H 0.96701 * 116.99698 * 179.97438 * 21 19 18 37 37 H 1.08004 * 119.93213 * 179.97438 * 24 22 18 38 38 H 1.08994 * 109.88406 * 120.40015 * 25 13 12 39 39 H 1.09006 * 109.88447 * 241.58319 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.3670 -2.5702 -1.1201 11 6 0.4699 -2.6860 1.3279 12 6 0.3692 -4.2292 1.4172 13 7 1.6594 -4.7229 0.8905 14 6 1.4849 -5.9958 0.1782 15 6 1.1384 -7.0804 1.1655 16 6 -0.1874 -7.3349 1.4719 17 6 -0.5129 -8.3293 2.3698 18 6 0.4988 -9.0818 2.9711 19 6 0.1578 -10.1478 3.9339 20 8 1.0399 -10.8008 4.4548 21 8 -1.1317 -10.3971 4.2341 22 6 1.8352 -8.8200 2.6576 23 17 3.1012 -9.7490 3.3980 24 6 2.1461 -7.8198 1.7569 25 6 2.2282 -3.6934 0.0012 26 1 -0.4849 0.8401 0.0004 27 1 -0.2677 -1.8422 -1.1670 28 1 1.0304 -2.2819 2.1710 29 1 -0.5194 -2.2325 1.2660 30 1 -0.4551 -4.5918 0.8030 31 1 0.2378 -4.5416 2.4531 32 1 2.4106 -6.2545 -0.3356 33 1 0.6802 -5.8970 -0.5504 34 1 -0.9690 -6.7532 1.0060 35 1 -1.5478 -8.5260 2.6077 36 1 -1.3056 -11.1049 4.8697 37 1 3.1784 -7.6155 1.5135 38 1 3.2013 -3.3762 0.3760 39 1 2.3290 -4.0906 -1.0089 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601062643.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:58 Heat of formation + Delta-G solvation = -129.077841 kcal Electronic energy + Delta-G solvation = -24921.430642 eV Core-core repulsion = 21047.044559 eV Total energy + Delta-G solvation = -3874.386083 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.50815 -40.50737 -39.50968 -37.60375 -36.97773 -36.52332 -34.09876 -33.58362 -31.92905 -30.97736 -29.84955 -27.66589 -26.03891 -24.18359 -23.91661 -22.09640 -21.66009 -21.25622 -19.18970 -19.11288 -18.48440 -17.27425 -16.92768 -16.83098 -16.69470 -16.46131 -15.93241 -15.79650 -15.48008 -15.10689 -14.83060 -14.43755 -14.24645 -14.03627 -13.79566 -13.49686 -13.21763 -13.12494 -12.80039 -12.66484 -12.54005 -12.50467 -12.46206 -12.38035 -12.28343 -12.13354 -12.05557 -11.76644 -11.15027 -11.05168 -10.61338 -10.13498 -10.04492 -9.84955 -9.22603 -8.21181 -6.34874 -0.54027 0.13380 1.02287 1.41238 1.44019 1.44872 1.52857 2.00637 2.39528 2.50729 3.03666 3.24180 3.55361 3.70455 3.91139 3.95067 4.05734 4.17872 4.25529 4.39170 4.41280 4.49505 4.59833 4.67699 4.75201 4.83114 4.87544 5.00838 5.08200 5.15925 5.29799 5.40122 5.51314 5.56656 5.58210 5.60291 5.83223 5.95780 6.18938 6.22168 6.69482 6.97221 7.35946 7.46446 8.84018 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.025983 B = 0.002674 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.365630 B =10468.415521 C =10894.045009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.029 3.971 3 Si 0.957 3.043 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.557 4.557 8 H 0.056 0.944 9 C 0.221 3.779 10 O -0.598 6.598 11 C -0.126 4.126 12 C 0.054 3.946 13 N -0.523 5.523 14 C 0.081 3.919 15 C -0.020 4.020 16 C -0.123 4.123 17 C -0.037 4.037 18 C -0.143 4.143 19 C 0.527 3.473 20 O -0.524 6.524 21 O -0.502 6.502 22 C 0.008 3.992 23 Cl -0.045 7.045 24 C -0.107 4.107 25 C 0.065 3.935 26 H 0.269 0.731 27 H 0.378 0.622 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.149 0.851 35 H 0.170 0.830 36 H 0.434 0.566 37 H 0.150 0.850 38 H 0.077 0.923 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.822 -18.150 4.984 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.171 4.171 3 Si 0.783 3.217 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.595 4.595 8 H 0.074 0.926 9 C 0.181 3.819 10 O -0.407 6.407 11 C -0.165 4.165 12 C -0.073 4.073 13 N -0.247 5.247 14 C -0.046 4.046 15 C -0.021 4.021 16 C -0.141 4.141 17 C -0.055 4.055 18 C -0.145 4.145 19 C 0.372 3.628 20 O -0.415 6.415 21 O -0.317 6.317 22 C -0.020 4.020 23 Cl -0.016 7.016 24 C -0.126 4.126 25 C -0.062 4.062 26 H 0.078 0.922 27 H 0.228 0.772 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.071 0.929 34 H 0.166 0.834 35 H 0.187 0.813 36 H 0.297 0.703 37 H 0.168 0.832 38 H 0.095 0.905 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.853 -18.641 5.208 19.444 hybrid contribution -0.366 1.314 -0.055 1.365 sum -2.219 -17.328 5.153 18.213 Atomic orbital electron populations 1.69659 1.06749 1.28114 1.50904 1.25660 0.95817 1.02177 0.93438 0.85570 0.78751 0.79249 0.78108 1.20323 1.20739 1.19616 1.21911 0.93614 0.92211 1.51775 0.92618 1.19939 0.86706 0.92341 0.82942 1.86052 1.51633 1.52920 1.50106 1.22979 1.00204 0.94047 0.99287 1.23003 0.90047 0.94691 0.99556 1.63735 1.24264 1.02476 1.34209 1.21372 1.02368 0.87762 0.93099 1.20052 0.93228 0.93847 0.94970 1.21431 0.96266 0.97987 0.98414 1.21602 0.99875 0.91714 0.92349 1.18965 0.92690 1.00348 1.02534 1.20643 0.80830 0.81741 0.79635 1.90972 1.49436 1.49341 1.51723 1.84495 1.26557 1.57900 1.62712 1.21101 0.88736 0.95276 0.96845 1.98407 1.50274 1.71860 1.81048 1.20989 1.01318 0.94164 0.96125 1.22702 0.97892 0.90888 0.94719 0.92160 0.77179 0.93428 0.92732 0.93418 0.90489 0.88605 0.92938 0.83364 0.81273 0.70348 0.83247 0.90457 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.67 10.69 21.45 0.23 -47.44 16 2 C 0.03 1.50 5.28 84.66 0.45 1.95 16 3 Si 0.96 41.47 29.54 68.60 2.03 43.49 16 4 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.56 -29.09 8.22 25.60 0.21 -28.88 16 8 H 0.06 2.90 7.53 -2.91 -0.02 2.88 16 9 C 0.22 10.44 0.85 -10.36 -0.01 10.44 16 10 O -0.60 -29.72 13.08 -148.98 -1.95 -31.67 16 11 C -0.13 -5.56 5.67 31.98 0.18 -5.37 16 12 C 0.05 1.89 5.59 86.77 0.49 2.38 16 13 N -0.52 -17.64 5.15 -890.08 -4.59 -22.22 16 14 C 0.08 2.17 4.72 85.56 0.40 2.58 16 15 C -0.02 -0.46 5.10 -19.81 -0.10 -0.56 16 16 C -0.12 -2.45 8.90 22.23 0.20 -2.26 16 17 C -0.04 -0.68 9.62 22.53 0.22 -0.46 16 18 C -0.14 -3.12 5.88 -20.08 -0.12 -3.24 16 19 C 0.53 11.03 8.26 70.30 0.58 11.61 16 20 O -0.52 -13.73 14.76 19.89 0.29 -13.44 16 21 O -0.50 -6.67 12.68 -56.38 -0.71 -7.39 16 22 C 0.01 0.18 6.35 22.61 0.14 0.33 16 23 Cl -0.05 -1.14 26.03 -2.72 -0.07 -1.21 16 24 C -0.11 -2.46 9.46 22.26 0.21 -2.25 16 25 C 0.07 2.62 6.21 86.64 0.54 3.16 16 26 H 0.27 13.41 8.31 -92.71 -0.77 12.64 16 27 H 0.38 19.57 6.98 -74.06 -0.52 19.05 16 28 H 0.05 2.20 8.05 -2.38 -0.02 2.18 16 29 H 0.05 2.57 7.76 -2.39 -0.02 2.55 16 30 H 0.05 1.58 6.97 -2.39 -0.02 1.56 16 31 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.10 2.32 7.97 -2.39 -0.02 2.30 16 33 H 0.05 1.44 7.79 -2.39 -0.02 1.42 16 34 H 0.15 2.65 7.46 -2.91 -0.02 2.63 16 35 H 0.17 2.20 7.61 -2.91 -0.02 2.18 16 36 H 0.43 1.83 9.11 -74.06 -0.67 1.15 16 37 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 38 H 0.08 3.15 7.63 -2.39 -0.02 3.13 16 39 H 0.05 2.01 7.48 -2.38 -0.02 1.99 16 Total: -1.00 -61.09 340.22 -1.46 -62.56 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: -0.08 Total: 27.91 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 3.39 Total: -10.58 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: -4.36 Total: -69.67 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -2.37 Total: -52.50 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.07 Total: -1.21 kcal Total: -61.09 -1.46 -62.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601062643.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.520 kcal (2) G-P(sol) polarization free energy of solvation -61.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds