Wall clock time and date at job start Tue Mar 31 2020 14:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99682 * 2 1 4 4 H 1.48506 * 109.47064 * 270.00234 * 3 2 1 5 5 H 1.48498 * 109.47319 * 29.99845 * 3 2 1 6 6 H 1.48494 * 109.47212 * 150.00253 * 3 2 1 7 7 C 1.37870 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00250 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00009 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47306 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47306 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99883 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00122 * 180.02562 * 11 10 9 14 14 C 1.46497 * 120.00138 * 174.97018 * 13 11 10 15 15 H 1.09002 * 109.47587 * 324.19048 * 14 13 11 16 16 C 1.52999 * 109.47135 * 84.18882 * 14 13 11 17 17 C 1.50708 * 109.47093 * 186.58657 * 16 14 13 18 18 O 1.20822 * 119.99890 * 6.59592 * 17 16 14 19 19 O 1.34233 * 119.99499 * 186.59549 * 17 16 14 20 20 C 1.50700 * 109.47315 * 204.18677 * 14 13 11 21 21 C 1.38240 * 119.98690 * 319.72851 * 20 14 13 22 22 C 1.38218 * 120.01260 * 179.72634 * 21 20 14 23 23 C 1.38350 * 119.98417 * 0.54343 * 22 21 20 24 24 Cl 1.73605 * 120.01136 * 179.75050 * 23 22 21 25 25 C 1.38355 * 119.97668 * 359.72752 * 23 22 21 26 26 C 1.38211 * 119.98274 * 0.02562 * 25 23 22 27 27 H 0.97001 * 120.00275 * 359.97438 * 1 2 3 28 28 H 1.09007 * 109.47229 * 60.00118 * 9 7 2 29 29 H 1.09001 * 109.47016 * 300.00210 * 9 7 2 30 30 H 1.09004 * 109.47179 * 60.00336 * 10 9 7 31 31 H 1.09001 * 109.47224 * 300.00045 * 10 9 7 32 32 H 0.96998 * 120.00255 * 354.97273 * 13 11 10 33 33 H 1.09007 * 109.47175 * 306.58094 * 16 14 13 34 34 H 1.08996 * 109.47411 * 66.58707 * 16 14 13 35 35 H 0.96701 * 116.99673 * 179.97438 * 19 17 16 36 36 H 1.07999 * 119.99083 * 359.97438 * 21 20 14 37 37 H 1.07996 * 120.00575 * 180.27475 * 22 21 20 38 38 H 1.08001 * 120.00487 * 179.97438 * 25 23 22 39 39 H 1.08007 * 119.98957 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4919 -4.9671 -0.0012 12 8 0.2791 -4.9671 -0.0021 13 7 2.1658 -6.1343 -0.0008 14 6 1.4375 -7.4006 0.1099 15 1 0.5816 -7.2709 0.7723 16 6 0.9498 -7.8311 -1.2750 17 6 0.0655 -9.0441 -1.1414 18 8 -0.2491 -9.4447 -0.0458 19 8 -0.3724 -9.6795 -2.2398 20 6 2.3518 -8.4586 0.6717 21 6 3.6698 -8.5226 0.2594 22 6 4.5104 -9.4892 0.7786 23 6 4.0295 -10.3998 1.7025 24 17 5.0830 -11.6182 2.3502 25 6 2.7089 -10.3388 2.1105 26 6 1.8707 -9.3685 1.5945 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6248 -2.5570 0.8897 30 1 2.8720 -3.6043 0.8895 31 1 2.8720 -3.6042 -0.8905 32 1 3.1330 -6.1359 -0.0737 33 1 0.3845 -7.0178 -1.7301 34 1 1.8070 -8.0737 -1.9029 35 1 -0.9368 -10.4529 -2.1039 36 1 4.0437 -7.8147 -0.4654 37 1 5.5411 -9.5364 0.4597 38 1 2.3330 -11.0496 2.8315 39 1 0.8399 -9.3205 1.9133 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:07 Heat of formation + Delta-G solvation = -124.212443 kcal Electronic energy + Delta-G solvation = -24437.331109 eV Core-core repulsion = 20563.156006 eV Total energy + Delta-G solvation = -3874.175103 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.90914 -39.73659 -38.98590 -36.93865 -36.34499 -35.30973 -33.49228 -32.00162 -31.35194 -30.70617 -30.07233 -26.18591 -24.75332 -23.29117 -22.31790 -21.78156 -20.40134 -19.79595 -18.35650 -17.81854 -17.08665 -16.72691 -16.29212 -15.79919 -15.67980 -15.34845 -15.05798 -14.82477 -14.41144 -13.99344 -13.87549 -13.78271 -13.44352 -13.16554 -12.95358 -12.60140 -12.21417 -12.11008 -11.84977 -11.70859 -11.58054 -11.33076 -11.20190 -11.08260 -10.94902 -10.72814 -10.61770 -10.00015 -9.72365 -9.33291 -9.28926 -9.11773 -9.09281 -8.85604 -8.34436 -5.98461 -4.03043 0.76427 1.00270 1.81794 2.03229 2.68671 3.07704 3.28622 3.31880 3.38264 3.40589 3.56550 4.24497 4.45080 4.45694 4.56549 4.62859 4.92011 5.00965 5.12503 5.16681 5.32333 5.36706 5.40000 5.49711 5.61592 5.78022 5.86889 5.93954 6.15509 6.18468 6.19746 6.30326 6.49303 6.53884 6.83346 7.68758 7.70020 7.72487 7.82212 8.03875 8.34900 8.63271 9.05281 9.60815 11.12417 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014555 B = 0.002660 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.290758 B =10523.041164 C =11979.610628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.512 3.488 12 O -0.528 6.528 13 N -0.738 5.738 14 C 0.199 3.801 15 H 0.108 0.892 16 C -0.126 4.126 17 C 0.486 3.514 18 O -0.511 6.511 19 O -0.517 6.517 20 C -0.092 4.092 21 C -0.101 4.101 22 C -0.113 4.113 23 C -0.032 4.032 24 Cl -0.075 7.075 25 C -0.114 4.114 26 C -0.068 4.068 27 H 0.261 0.739 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.400 0.600 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.409 0.591 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.900 -24.843 -0.934 26.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.566 4.566 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.301 3.699 12 O -0.402 6.402 13 N -0.393 5.393 14 C 0.093 3.907 15 H 0.126 0.874 16 C -0.165 4.165 17 C 0.328 3.672 18 O -0.399 6.399 19 O -0.329 6.329 20 C -0.093 4.093 21 C -0.120 4.120 22 C -0.131 4.131 23 C -0.059 4.059 24 Cl -0.046 7.046 25 C -0.132 4.132 26 C -0.087 4.087 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.235 0.765 33 H 0.140 0.860 34 H 0.125 0.875 35 H 0.268 0.732 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.103 -24.553 -0.607 25.567 hybrid contribution 0.664 0.207 0.056 0.698 sum 7.767 -24.346 -0.551 25.561 Atomic orbital electron populations 1.69995 1.06055 1.26626 1.50131 1.25022 0.94825 0.99245 0.95278 0.86593 0.79785 0.83511 0.78066 1.20671 1.21227 1.19875 1.21207 0.92931 0.90984 1.51474 0.92589 1.18908 0.93158 0.89345 0.98676 1.21892 1.00791 0.91585 1.02693 1.21693 0.88738 0.85513 0.73957 1.90691 1.14385 1.87497 1.47644 1.46353 1.10477 1.04711 1.77771 1.19397 0.94772 0.82197 0.94321 0.87362 1.21839 0.99692 0.94513 1.00408 1.23260 0.78337 0.83903 0.81669 1.90682 1.55553 1.65821 1.27841 1.84543 1.64672 1.45308 1.38400 1.20005 0.94349 0.97188 0.97757 1.20941 0.92876 0.98226 0.99924 1.20985 1.00614 0.94714 0.96828 1.21003 0.91951 0.93731 0.99209 1.98372 1.66188 1.54511 1.85548 1.21096 0.91596 0.99736 1.00818 1.21204 1.00258 0.92844 0.94384 0.92926 0.95774 0.95778 0.89993 0.90083 0.76503 0.85989 0.87521 0.73205 0.84893 0.84774 0.84866 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.04 0.95 4.26 -27.89 -0.12 0.83 16 10 C -0.13 -2.46 5.64 -27.89 -0.16 -2.61 16 11 C 0.51 8.95 7.78 -10.99 -0.09 8.86 16 12 O -0.53 -11.46 15.56 5.56 0.09 -11.38 16 13 N -0.74 -9.08 5.03 -54.93 -0.28 -9.35 16 14 C 0.20 2.32 1.91 -69.08 -0.13 2.19 16 15 H 0.11 1.55 7.20 -51.93 -0.37 1.18 16 16 C -0.13 -1.31 5.54 -27.88 -0.15 -1.46 16 17 C 0.49 5.17 8.01 36.01 0.29 5.46 16 18 O -0.51 -6.37 13.61 -18.75 -0.26 -6.62 16 19 O -0.52 -4.36 13.42 -39.26 -0.53 -4.89 16 20 C -0.09 -0.93 4.51 -104.62 -0.47 -1.41 16 21 C -0.10 -0.85 9.02 -39.59 -0.36 -1.21 16 22 C -0.11 -0.95 9.83 -39.55 -0.39 -1.34 16 23 C -0.03 -0.30 6.32 -39.50 -0.25 -0.55 16 24 Cl -0.08 -0.66 28.96 -51.86 -1.50 -2.16 16 25 C -0.11 -1.09 9.83 -39.55 -0.39 -1.48 16 26 C -0.07 -0.72 8.15 -39.59 -0.32 -1.04 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 29 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.40 3.74 6.89 -40.82 -0.28 3.46 16 33 H 0.12 1.45 7.99 -51.93 -0.41 1.04 16 34 H 0.11 0.86 8.11 -51.93 -0.42 0.44 16 35 H 0.41 1.73 9.10 45.56 0.41 2.14 16 36 H 0.13 0.83 6.94 -52.49 -0.36 0.46 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.14 1.58 6.86 -52.48 -0.36 1.22 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -34.76 353.84 -8.25 -43.01 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -3.87 Total: 3.14 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -2.95 Total: -7.12 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.46 Total: -35.66 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.70 Total: -22.88 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.76 -8.25 -43.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.202 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds