Wall clock time and date at job start Tue Mar 31 2020 14:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86798 * 119.99911 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00411 * 3 2 1 5 5 H 1.48500 * 109.47094 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46850 * 120.00330 * 3 2 1 7 7 C 1.38652 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99727 * 179.97438 * 7 2 1 9 9 O 1.34820 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.35768 * 116.99886 * 185.06746 * 9 7 2 11 11 C 1.38895 * 120.05652 * 354.40300 * 10 9 7 12 12 C 1.38071 * 119.94530 * 179.97438 * 11 10 9 13 13 C 1.38431 * 120.05582 * 359.97438 * 12 11 10 14 14 Cl 1.73591 * 119.94602 * 180.02562 * 13 12 11 15 15 C 1.38395 * 120.11192 * 359.78991 * 13 12 11 16 16 C 1.38117 * 120.05352 * 0.46119 * 15 13 12 17 17 C 1.50698 * 120.02806 * 179.79054 * 16 15 13 18 18 N 1.46905 * 109.46889 * 259.72770 * 17 16 15 19 19 C 1.46895 * 110.99570 * 179.97438 * 18 17 16 20 20 H 1.09002 * 109.47614 * 325.00015 * 19 18 17 21 21 C 1.50707 * 109.46995 * 204.99788 * 19 18 17 22 22 O 1.20821 * 119.99982 * 0.02562 * 21 19 18 23 23 O 1.34235 * 119.99849 * 180.02562 * 21 19 18 24 24 C 1.53000 * 109.47254 * 85.00233 * 19 18 17 25 25 C 1.53004 * 117.50033 * 248.74456 * 24 19 18 26 26 C 1.53007 * 117.50272 * 180.08655 * 24 19 18 27 27 H 0.96994 * 119.99920 * 359.97438 * 1 2 3 28 28 H 1.08006 * 120.02640 * 359.97438 * 11 10 9 29 29 H 1.07994 * 119.97240 * 180.02562 * 12 11 10 30 30 H 1.07995 * 119.97321 * 180.23578 * 15 13 12 31 31 H 1.08996 * 109.47214 * 139.72497 * 17 16 15 32 32 H 1.09001 * 109.47124 * 19.72140 * 17 16 15 33 33 H 1.00896 * 111.00395 * 56.04609 * 18 17 16 34 34 H 0.96698 * 116.99812 * 180.02562 * 23 21 19 35 35 H 1.09001 * 115.55280 * 34.41481 * 24 19 18 36 36 H 1.09004 * 117.49364 * 359.97438 * 25 24 19 37 37 H 1.08996 * 117.49812 * 145.01269 * 25 24 19 38 38 H 1.08994 * 117.49933 * 214.97720 * 26 24 19 39 39 H 1.09004 * 117.49525 * 359.97438 * 26 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1032 1.6965 -1.2125 5 1 1.2845 2.7464 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3683 -0.0005 10 6 2.0701 -3.5046 0.1058 11 6 3.4575 -3.4393 0.0912 12 6 4.2031 -4.5963 0.2000 13 6 3.5691 -5.8206 0.3241 14 17 4.5094 -7.2733 0.4613 15 6 2.1869 -5.8879 0.3438 16 6 1.4365 -4.7340 0.2300 17 6 -0.0685 -4.8085 0.2468 18 7 -0.5782 -4.7262 -1.1285 19 6 -2.0453 -4.7964 -1.1512 20 1 -2.3893 -5.4666 -0.3635 21 6 -2.5026 -5.3175 -2.4894 22 8 -1.6897 -5.6017 -3.3369 23 8 -3.8130 -5.4658 -2.7396 24 6 -2.6263 -3.3996 -0.9223 25 6 -3.3591 -3.1468 0.3968 26 6 -4.1501 -3.2618 -0.9086 27 1 -0.4850 0.8400 0.0004 28 1 3.9526 -2.4843 -0.0052 29 1 5.2818 -4.5459 0.1891 30 1 1.6947 -6.8439 0.4445 31 1 -0.4668 -3.9797 0.8321 32 1 -0.3806 -5.7522 0.6941 33 1 -0.1731 -5.4460 -1.7080 34 1 -4.0579 -5.8037 -3.6119 35 1 -2.0503 -2.5759 -1.3439 36 1 -3.4276 -3.9757 1.1014 37 1 -3.2653 -2.1567 0.8429 38 1 -4.5764 -2.3473 -1.3209 39 1 -4.7386 -4.1662 -1.0632 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074227.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:20 Heat of formation + Delta-G solvation = -87.981873 kcal Electronic energy + Delta-G solvation = -25353.782507 eV Core-core repulsion = 21481.178480 eV Total energy + Delta-G solvation = -3872.604028 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.55330 -40.89776 -38.64712 -38.35304 -37.33464 -37.00775 -35.85218 -34.21110 -32.51456 -30.46750 -28.83164 -27.28839 -25.53823 -23.63691 -23.36310 -23.03348 -22.21804 -21.05772 -19.83638 -19.22151 -18.78058 -17.86016 -17.13386 -16.93230 -16.73119 -16.59573 -16.13912 -15.65701 -15.43071 -15.26156 -14.89875 -14.81763 -14.56986 -14.09939 -13.81607 -13.76761 -13.57018 -13.25606 -12.75811 -12.73539 -12.57711 -12.51922 -12.41339 -12.23649 -12.15149 -11.90009 -11.84239 -11.79598 -11.24089 -11.08522 -10.82941 -10.69115 -9.85144 -9.38764 -8.86647 -8.39801 -6.04656 0.40441 0.54414 1.11483 1.37184 1.38793 1.46335 1.51131 1.94941 2.19778 2.67140 2.91951 3.15935 3.38923 3.49712 3.75458 3.91190 3.97032 4.01381 4.09880 4.20469 4.26681 4.40013 4.46356 4.56265 4.65083 4.75834 4.86738 4.89119 5.08264 5.11888 5.15773 5.33446 5.38293 5.40261 5.46719 5.55602 5.63106 5.94782 6.00247 6.06522 6.38351 6.98273 7.03671 7.82264 8.79326 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.007047 B = 0.005916 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3972.186183 B = 4731.787920 C = 8067.013583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.009 4.009 3 Si 1.005 2.995 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.417 4.417 8 H 0.097 0.903 9 O -0.187 6.187 10 C 0.146 3.854 11 C -0.240 4.240 12 C -0.055 4.055 13 C -0.119 4.119 14 Cl -0.078 7.078 15 C -0.051 4.051 16 C -0.158 4.158 17 C 0.134 3.866 18 N -0.678 5.678 19 C 0.137 3.863 20 H 0.104 0.896 21 C 0.493 3.507 22 O -0.542 6.542 23 O -0.496 6.496 24 C -0.155 4.155 25 C -0.166 4.166 26 C -0.148 4.148 27 H 0.269 0.731 28 H 0.129 0.871 29 H 0.143 0.857 30 H 0.151 0.849 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.348 0.652 34 H 0.427 0.573 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.871 -10.930 0.250 11.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.209 4.209 3 Si 0.826 3.174 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.493 4.493 8 H 0.114 0.886 9 O -0.091 6.091 10 C 0.092 3.908 11 C -0.260 4.260 12 C -0.074 4.074 13 C -0.146 4.146 14 Cl -0.050 7.050 15 C -0.070 4.070 16 C -0.160 4.160 17 C 0.007 3.993 18 N -0.314 5.314 19 C 0.026 3.974 20 H 0.121 0.879 21 C 0.336 3.664 22 O -0.432 6.432 23 O -0.309 6.309 24 C -0.174 4.174 25 C -0.203 4.203 26 C -0.185 4.185 27 H 0.078 0.922 28 H 0.146 0.854 29 H 0.161 0.839 30 H 0.169 0.831 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.170 0.830 34 H 0.289 0.711 35 H 0.094 0.906 36 H 0.129 0.871 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.906 -10.115 0.360 11.248 hybrid contribution 0.569 0.015 -0.553 0.794 sum -4.337 -10.101 -0.193 10.994 Atomic orbital electron populations 1.70170 1.07403 1.28338 1.47181 1.26300 0.96735 1.01938 0.95913 0.84832 0.77595 0.75386 0.79606 1.18854 1.19848 1.18386 1.21711 0.92349 0.81765 1.53491 0.88579 1.84036 1.34608 1.11668 1.78790 1.19689 0.90817 0.88201 0.92088 1.21205 0.93383 0.99469 1.11905 1.20873 1.00348 0.89883 0.96320 1.20449 0.91695 0.87290 1.15153 1.98294 1.72943 1.36672 1.97089 1.20722 0.91498 0.97599 0.97188 1.18960 0.95692 0.90138 1.11249 1.20447 0.89686 1.00555 0.88621 1.60186 1.03303 1.55952 1.11962 1.20619 0.89196 0.96023 0.91548 0.87888 1.23332 0.80659 0.72750 0.89650 1.90705 1.55719 1.48543 1.48259 1.84487 1.24731 1.78375 1.43298 1.21900 0.95328 0.95606 1.04588 1.23004 1.03310 1.03038 0.90915 1.23112 0.91396 1.04288 0.99680 0.92158 0.85374 0.83909 0.83142 0.91876 0.91885 0.83000 0.71065 0.90643 0.87071 0.90347 0.88881 0.85695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.55 13.67 21.61 0.30 -51.26 16 2 C -0.01 -0.47 5.49 84.83 0.47 0.00 16 3 Si 1.01 41.69 29.55 68.60 2.03 43.72 16 4 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 7 C -0.42 -23.02 9.49 67.92 0.64 -22.38 16 8 H 0.10 4.93 5.20 -2.91 -0.02 4.91 16 9 O -0.19 -10.38 9.00 -22.84 -0.21 -10.58 16 10 C 0.15 6.78 6.62 22.58 0.15 6.93 16 11 C -0.24 -10.07 9.17 22.39 0.21 -9.87 16 12 C -0.06 -1.92 9.82 22.28 0.22 -1.71 16 13 C -0.12 -3.87 6.32 22.35 0.14 -3.73 16 14 Cl -0.08 -2.13 28.95 -2.72 -0.08 -2.21 16 15 C -0.05 -1.66 9.45 22.28 0.21 -1.45 16 16 C -0.16 -6.15 5.41 -19.74 -0.11 -6.26 16 17 C 0.13 4.73 5.28 85.56 0.45 5.18 16 18 N -0.68 -24.40 6.18 -499.45 -3.08 -27.48 16 19 C 0.14 4.04 2.76 44.17 0.12 4.16 16 20 H 0.10 2.44 7.56 -2.39 -0.02 2.42 16 21 C 0.49 13.62 7.63 71.24 0.54 14.17 16 22 O -0.54 -18.62 16.40 21.98 0.36 -18.25 16 23 O -0.50 -9.20 11.36 -51.46 -0.58 -9.79 16 24 C -0.15 -5.12 5.22 -10.79 -0.06 -5.18 16 25 C -0.17 -4.78 10.18 30.62 0.31 -4.46 16 26 C -0.15 -3.70 9.45 30.62 0.29 -3.41 16 27 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 28 H 0.13 5.44 5.64 -2.91 -0.02 5.43 16 29 H 0.14 4.16 8.06 -2.91 -0.02 4.14 16 30 H 0.15 3.94 8.03 -2.91 -0.02 3.92 16 31 H 0.06 2.59 7.73 -2.39 -0.02 2.58 16 32 H 0.06 1.72 7.91 -2.39 -0.02 1.70 16 33 H 0.35 12.34 7.44 -89.70 -0.67 11.67 16 34 H 0.43 4.13 9.10 -74.06 -0.67 3.45 16 35 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.11 2.65 8.05 -2.38 -0.02 2.63 16 37 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.12 2.51 6.85 -2.38 -0.02 2.49 16 Total: -1.00 -68.30 353.03 2.10 -66.20 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: -0.22 Total: 37.66 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 3.59 Total: -27.99 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -2.79 Total: -78.74 kcal Atomic # 8 Polarization: -38.20 SS G_CDS: -0.43 Total: -38.63 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 17 Polarization: -2.13 SS G_CDS: -0.08 Total: -2.21 kcal Total: -68.30 2.10 -66.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074227.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.783 kcal (2) G-P(sol) polarization free energy of solvation -68.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds