Wall clock time and date at job start Tue Mar 31 2020 13:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48504 * 109.46793 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47282 * 300.00142 * 3 2 1 6 6 H 1.48500 * 109.47237 * 60.00639 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 H 1.09001 * 109.71991 * 324.39264 * 14 13 11 16 16 C 1.53442 * 109.71548 * 203.73914 * 14 13 11 17 17 C 1.53133 * 109.06311 * 192.02577 * 16 14 13 18 18 C 1.53142 * 109.61464 * 69.58262 * 17 16 14 19 19 N 1.47000 * 108.88509 * 308.89446 * 18 17 16 20 20 N 1.28425 * 126.36577 * 197.68271 * 19 18 17 21 21 C 1.31910 * 110.22002 * 179.97438 * 20 19 18 22 22 C 1.47576 * 126.50843 * 180.02562 * 21 20 19 23 23 O 1.21495 * 120.00137 * 180.02562 * 22 21 20 24 24 O 1.34728 * 120.00304 * 0.02562 * 22 21 20 25 25 C 1.41691 * 106.98884 * 0.02631 * 21 20 19 26 26 C 1.34685 * 105.34096 * 0.02562 * 25 21 20 27 27 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 28 28 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 29 29 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 30 30 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 31 31 H 1.08997 * 109.54555 * 311.88990 * 16 14 13 32 32 H 1.09007 * 109.53656 * 72.14886 * 16 14 13 33 33 H 1.09001 * 109.43384 * 309.54055 * 17 16 14 34 34 H 1.09000 * 109.42822 * 189.61641 * 17 16 14 35 35 H 1.09001 * 109.56769 * 189.07851 * 18 17 16 36 36 H 1.08998 * 109.66912 * 68.77467 * 18 17 16 37 37 H 0.96695 * 117.00272 * 180.02562 * 24 22 21 38 38 H 1.07999 * 127.32941 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8916 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 2.3305 -7.7150 0.0094 15 1 1.4204 -7.7641 0.6072 16 6 3.3873 -8.6608 0.5951 17 6 2.9687 -10.1084 0.3231 18 6 3.0865 -10.4050 -1.1747 19 7 2.3775 -9.3579 -1.9243 20 7 1.9889 -9.4268 -3.1463 21 6 1.3848 -8.3077 -3.4965 22 6 0.7999 -8.0015 -4.8163 23 8 0.2688 -6.9262 -5.0108 24 8 0.8548 -8.9143 -5.8057 25 6 1.4042 -7.4552 -2.3649 26 6 2.0370 -8.1541 -1.4031 27 1 -0.4851 0.8400 0.0004 28 1 3.1252 -3.7317 0.8875 29 1 3.1238 -3.7309 -0.8925 30 1 3.8010 -6.1834 0.0019 31 1 4.3514 -8.4660 0.1253 32 1 3.4650 -8.4995 1.6703 33 1 1.9364 -10.2534 0.6417 34 1 3.6184 -10.7843 0.8791 35 1 2.6393 -11.3752 -1.3911 36 1 4.1370 -10.4142 -1.4653 37 1 0.4584 -8.6682 -6.6527 38 1 0.9981 -6.4573 -2.2897 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601075303.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:48 Heat of formation + Delta-G solvation = -47.650746 kcal Electronic energy + Delta-G solvation = -24715.037152 eV Core-core repulsion = 20878.518471 eV Total energy + Delta-G solvation = -3836.518682 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.06178 -39.92409 -39.36005 -37.09399 -36.09452 -34.61218 -32.41407 -32.02088 -30.76308 -29.48399 -28.14279 -25.54233 -25.26549 -23.65792 -22.60449 -20.98270 -20.46839 -19.76850 -17.91630 -17.77607 -17.42392 -16.97591 -16.40362 -16.36011 -15.92430 -15.44085 -14.98144 -14.79084 -14.67878 -14.17900 -14.07122 -13.86226 -13.59705 -13.25167 -13.09810 -12.70854 -12.53781 -12.09852 -11.92138 -11.60415 -11.58403 -11.55985 -11.06180 -11.01693 -11.00778 -10.85084 -10.74336 -9.80069 -9.56044 -9.31754 -9.23318 -9.06686 -9.04197 -8.22411 -6.48425 -6.20295 -3.90751 1.23077 1.89216 2.05058 2.92279 2.96833 3.03552 3.13632 3.22990 3.28707 3.33014 3.62990 3.85754 4.12726 4.21314 4.22372 4.30672 4.58092 4.65502 4.85223 4.94790 5.06263 5.15108 5.17712 5.25847 5.35618 5.44600 5.54810 5.56052 5.73145 5.85905 5.87048 6.12370 6.31488 6.37270 6.41064 6.54798 7.55355 7.61409 7.62599 7.94032 8.36630 8.50048 9.25222 10.87146 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014199 B = 0.003217 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1971.519708 B = 8702.590076 C =10219.716158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.057 6.057 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.507 6.507 13 N -0.729 5.729 14 C 0.220 3.780 15 H 0.113 0.887 16 C -0.134 4.134 17 C -0.132 4.132 18 C 0.120 3.880 19 N -0.275 5.275 20 N -0.232 5.232 21 C -0.014 4.014 22 C 0.572 3.428 23 O -0.497 6.497 24 O -0.506 6.506 25 C -0.138 4.138 26 C -0.005 4.005 27 H 0.268 0.732 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.401 0.599 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.413 0.587 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.011 -23.969 -1.104 25.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.170 5.830 10 C -0.305 4.305 11 C 0.321 3.679 12 O -0.380 6.380 13 N -0.384 5.384 14 C 0.112 3.888 15 H 0.131 0.869 16 C -0.172 4.172 17 C -0.171 4.171 18 C 0.000 4.000 19 N -0.067 5.067 20 N -0.069 5.069 21 C -0.171 4.171 22 C 0.413 3.587 23 O -0.381 6.381 24 O -0.317 6.317 25 C -0.165 4.165 26 C -0.128 4.128 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.236 0.764 31 H 0.096 0.904 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.271 0.729 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 8.223 -25.111 -1.138 26.448 hybrid contribution 1.947 2.239 -0.442 3.000 sum 10.170 -22.873 -1.580 25.082 Atomic orbital electron populations 1.70027 1.05939 1.27360 1.46862 1.24988 0.95016 0.99021 0.94533 0.86122 0.79570 0.81930 0.77898 1.19635 1.20555 1.20586 1.22902 0.94930 0.91657 1.58919 0.90883 1.85432 1.04582 0.96285 1.96707 1.23540 1.06810 0.95081 1.05039 1.20410 0.86586 0.86284 0.74653 1.90734 1.15153 1.85399 1.46683 1.46019 1.10196 1.04169 1.77992 1.19346 0.98810 0.82128 0.88504 0.86913 1.21990 0.98706 0.93463 1.03025 1.21902 1.04511 0.97441 0.93257 1.22212 0.97409 0.89530 0.90816 1.45857 1.40624 1.12871 1.07314 1.73515 1.13317 1.23091 0.97003 1.20655 1.08630 0.93835 0.93974 1.19239 0.75690 0.81052 0.82686 1.90986 1.41271 1.24170 1.81710 1.84621 1.75654 1.46896 1.24543 1.21515 1.02889 1.02015 0.90099 1.21815 1.04767 0.87569 0.98656 0.92224 0.89101 0.89095 0.76385 0.90357 0.88972 0.89784 0.87945 0.87844 0.88628 0.72852 0.81236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.56 16 9 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 10 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 11 C 0.53 9.31 7.08 -10.98 -0.08 9.23 16 12 O -0.51 -10.79 14.55 5.55 0.08 -10.71 16 13 N -0.73 -8.71 5.02 -54.66 -0.27 -8.98 16 14 C 0.22 2.28 2.82 -68.81 -0.19 2.09 16 15 H 0.11 1.33 7.61 -51.93 -0.40 0.94 16 16 C -0.13 -0.74 5.47 -26.43 -0.14 -0.88 16 17 C -0.13 -0.52 5.91 -26.59 -0.16 -0.68 16 18 C 0.12 0.68 7.17 -3.70 -0.03 0.65 16 19 N -0.27 -3.00 3.74 -56.71 -0.21 -3.21 16 20 N -0.23 -3.15 12.04 33.44 0.40 -2.75 16 21 C -0.01 -0.22 7.17 -82.71 -0.59 -0.81 16 22 C 0.57 8.59 8.34 34.54 0.29 8.88 16 23 O -0.50 -8.96 17.71 -19.26 -0.34 -9.30 16 24 O -0.51 -5.66 13.44 -40.57 -0.55 -6.21 16 25 C -0.14 -2.21 10.02 -39.52 -0.40 -2.60 16 26 C 0.00 -0.06 6.26 -82.17 -0.51 -0.57 16 27 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 29 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 30 H 0.40 3.60 8.58 -40.82 -0.35 3.25 16 31 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.38 8.11 -51.93 -0.42 -0.04 16 34 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 35 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.41 2.47 9.11 45.56 0.42 2.88 16 38 H 0.17 3.19 6.88 -52.49 -0.36 2.83 16 LS Contribution 345.92 15.07 5.21 5.21 Total: -1.00 -39.11 345.92 -7.19 -46.29 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -3.61 Total: 2.82 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.40 Total: -0.39 kcal Atomic # 7 Polarization: -41.08 SS G_CDS: 0.65 Total: -40.43 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.81 Total: -26.21 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -39.11 -7.19 -46.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075303.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.359 kcal (2) G-P(sol) polarization free energy of solvation -39.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds