Wall clock time and date at job start Tue Mar 31 2020 13:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86800 * 120.00086 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99649 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47086 * 119.99944 * 3 2 1 7 7 C 1.38803 * 119.99849 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00074 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00182 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 119.99654 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99768 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99561 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.71536 * 34.99304 * 14 13 11 16 16 C 1.53445 * 109.71426 * 155.60277 * 14 13 11 17 17 C 1.53239 * 109.00953 * 167.96552 * 16 14 13 18 18 C 1.53147 * 109.61730 * 290.42237 * 17 16 14 19 19 N 1.47003 * 108.88778 * 51.12352 * 18 17 16 20 20 N 1.28420 * 126.36647 * 162.30148 * 19 18 17 21 21 C 1.31913 * 110.22011 * 180.10955 * 20 19 18 22 22 C 1.47581 * 126.50610 * 180.02562 * 21 20 19 23 23 O 1.21490 * 119.99910 * 179.97438 * 22 21 20 24 24 O 1.34726 * 119.99881 * 359.95576 * 22 21 20 25 25 C 1.41691 * 106.98861 * 359.97438 * 21 20 19 26 26 C 1.34684 * 105.33559 * 359.97438 * 25 21 20 27 27 H 0.97005 * 119.99878 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46889 * 299.99975 * 10 9 7 29 29 H 1.09000 * 109.47231 * 59.99947 * 10 9 7 30 30 H 0.96993 * 120.00373 * 359.97438 * 13 11 10 31 31 H 1.09000 * 109.54201 * 287.85222 * 16 14 13 32 32 H 1.09001 * 109.54154 * 48.11647 * 16 14 13 33 33 H 1.08996 * 109.42654 * 170.38690 * 17 16 14 34 34 H 1.08997 * 109.42996 * 50.46487 * 17 16 14 35 35 H 1.08993 * 109.56685 * 291.30036 * 18 17 16 36 36 H 1.08999 * 109.56315 * 170.94248 * 18 17 16 37 37 H 0.96706 * 116.99743 * 179.97438 * 24 22 21 38 38 H 1.07999 * 127.32640 * 180.02562 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8440 -6.3432 0.0003 14 6 2.3301 -7.7152 0.0003 15 1 1.4142 -7.7648 -0.5885 16 6 3.3807 -8.6614 -0.5959 17 6 2.9637 -10.1094 -0.3175 18 6 3.0972 -10.4041 1.1794 19 7 2.3965 -9.3559 1.9352 20 7 2.0206 -9.4233 3.1613 21 6 1.4192 -8.3041 3.5159 22 6 0.8485 -7.9960 4.8416 23 8 0.3184 -6.9210 5.0398 24 8 0.9150 -8.9071 5.8319 25 6 1.4262 -7.4533 2.3829 26 6 2.0496 -8.1532 1.4158 27 1 -0.4850 0.8401 -0.0004 28 1 3.1243 -3.7315 -0.8895 29 1 3.1244 -3.7315 0.8905 30 1 3.8007 -6.1837 0.0006 31 1 3.4471 -8.5010 -1.6720 32 1 4.3497 -8.4663 -0.1365 33 1 3.6070 -10.7864 -0.8795 34 1 1.9280 -10.2539 -0.6250 35 1 4.1511 -10.4121 1.4573 36 1 2.6519 -11.3739 1.4016 37 1 0.5277 -8.6598 6.6828 38 1 1.0191 -6.4556 2.3106 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601075304.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:50 Heat of formation + Delta-G solvation = -47.603722 kcal Electronic energy + Delta-G solvation = -24710.206923 eV Core-core repulsion = 20873.690281 eV Total energy + Delta-G solvation = -3836.516642 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.06380 -39.92599 -39.35986 -37.08857 -36.09684 -34.61354 -32.41190 -32.01994 -30.76195 -29.48664 -28.14214 -25.53839 -25.26386 -23.65755 -22.60613 -20.98408 -20.47129 -19.76850 -17.91768 -17.77605 -17.42259 -16.97760 -16.40399 -16.36110 -15.92351 -15.44315 -14.97800 -14.78769 -14.67905 -14.17856 -14.06762 -13.86066 -13.59925 -13.25204 -13.09894 -12.70396 -12.53564 -12.10170 -11.92060 -11.60679 -11.58618 -11.55957 -11.03853 -11.03051 -11.01033 -10.85305 -10.75341 -9.81809 -9.56325 -9.31928 -9.23340 -9.06139 -9.03125 -8.23205 -6.48347 -6.19774 -3.90485 1.22925 1.88979 2.04878 2.91911 2.97224 3.03394 3.13402 3.24994 3.28427 3.31285 3.62890 3.85669 4.13041 4.21779 4.22243 4.30618 4.57911 4.65449 4.85272 4.94730 5.06191 5.15376 5.17691 5.25847 5.35619 5.44497 5.54663 5.56060 5.73224 5.85616 5.87066 6.12381 6.31228 6.36959 6.40919 6.54631 7.55334 7.60984 7.62448 7.93839 8.36450 8.50015 9.25384 10.87551 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.014183 B = 0.003214 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.716397 B = 8709.033154 C =10225.002926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.056 6.056 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.507 6.507 13 N -0.729 5.729 14 C 0.219 3.781 15 H 0.113 0.887 16 C -0.134 4.134 17 C -0.133 4.133 18 C 0.120 3.880 19 N -0.275 5.275 20 N -0.232 5.232 21 C -0.014 4.014 22 C 0.572 3.428 23 O -0.497 6.497 24 O -0.506 6.506 25 C -0.138 4.138 26 C -0.004 4.004 27 H 0.269 0.731 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.401 0.599 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.413 0.587 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.004 -23.957 1.125 25.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.090 0.910 9 S 0.171 5.829 10 C -0.305 4.305 11 C 0.321 3.679 12 O -0.380 6.380 13 N -0.384 5.384 14 C 0.112 3.888 15 H 0.131 0.869 16 C -0.172 4.172 17 C -0.171 4.171 18 C 0.000 4.000 19 N -0.067 5.067 20 N -0.069 5.069 21 C -0.171 4.171 22 C 0.413 3.587 23 O -0.381 6.381 24 O -0.317 6.317 25 C -0.165 4.165 26 C -0.128 4.128 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.236 0.764 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.121 0.879 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.272 0.728 38 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.209 -25.094 1.158 26.428 hybrid contribution 1.971 2.236 0.440 3.013 sum 10.180 -22.859 1.599 25.074 Atomic orbital electron populations 1.70006 1.05943 1.27583 1.46671 1.24982 0.95012 0.98993 0.94508 0.86234 0.79251 0.81295 0.78779 1.19966 1.20813 1.19924 1.22824 0.94867 0.91694 1.59182 0.90981 1.85426 1.04555 0.96231 1.96721 1.23542 1.06820 0.95084 1.05035 1.20411 0.86585 0.86285 0.74648 1.90733 1.15153 1.85398 1.46693 1.46015 1.10195 1.04174 1.77982 1.19348 0.98933 0.82133 0.88408 0.86891 1.22010 0.98761 0.93446 1.02959 1.21923 1.04495 0.97451 0.93263 1.22215 0.97563 0.89494 0.90688 1.45854 1.40853 1.12902 1.07044 1.73515 1.13528 1.23071 0.96812 1.20656 1.08745 0.93856 0.93834 1.19238 0.75602 0.81049 0.82774 1.90985 1.41122 1.24148 1.81888 1.84624 1.75952 1.46956 1.24179 1.21505 1.03009 1.02004 0.90009 1.21813 1.04765 0.87603 0.98615 0.92109 0.89109 0.89089 0.76389 0.88968 0.90363 0.87948 0.89788 0.88625 0.87827 0.72849 0.81258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.46 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.50 20.57 -107.50 -2.21 -3.71 16 10 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 11 C 0.53 9.31 7.10 -10.98 -0.08 9.23 16 12 O -0.51 -10.79 14.62 5.56 0.08 -10.71 16 13 N -0.73 -8.71 5.01 -54.65 -0.27 -8.98 16 14 C 0.22 2.28 2.82 -68.80 -0.19 2.09 16 15 H 0.11 1.34 7.59 -51.93 -0.39 0.94 16 16 C -0.13 -0.74 5.49 -26.38 -0.14 -0.89 16 17 C -0.13 -0.52 5.92 -26.53 -0.16 -0.68 16 18 C 0.12 0.68 7.17 -3.69 -0.03 0.65 16 19 N -0.27 -3.00 3.74 -56.71 -0.21 -3.21 16 20 N -0.23 -3.15 12.04 33.45 0.40 -2.74 16 21 C -0.01 -0.21 7.17 -82.70 -0.59 -0.81 16 22 C 0.57 8.57 8.34 34.54 0.29 8.86 16 23 O -0.50 -8.94 17.71 -19.26 -0.34 -9.28 16 24 O -0.51 -5.65 13.44 -40.56 -0.55 -6.20 16 25 C -0.14 -2.20 10.06 -39.52 -0.40 -2.60 16 26 C 0.00 -0.06 6.27 -82.17 -0.51 -0.57 16 27 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 28 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 29 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 30 H 0.40 3.60 8.59 -40.82 -0.35 3.25 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 33 H 0.10 0.13 8.14 -51.93 -0.42 -0.30 16 34 H 0.08 0.38 8.11 -51.93 -0.42 -0.04 16 35 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.41 2.46 9.11 45.56 0.42 2.87 16 38 H 0.17 3.17 6.95 -52.49 -0.36 2.81 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -39.06 346.11 -7.19 -46.25 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -3.62 Total: 2.88 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -1.40 Total: -0.44 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.65 Total: -40.44 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.80 Total: -26.19 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.21 Total: -3.71 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -39.06 -7.19 -46.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601075304.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.352 kcal (2) G-P(sol) polarization free energy of solvation -39.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds