Wall clock time and date at job start Tue Mar 31 2020 14:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00142 * 2 1 4 4 H 1.48500 * 109.46922 * 264.99973 * 3 2 1 5 5 H 1.48498 * 109.46982 * 24.99878 * 3 2 1 6 6 H 1.48501 * 109.47102 * 144.99705 * 3 2 1 7 7 C 1.37885 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00609 * 185.06160 * 7 2 1 9 9 C 1.50705 * 119.99513 * 5.05747 * 7 2 1 10 10 O 1.42901 * 110.87199 * 60.75535 * 9 7 2 11 11 C 1.55139 * 110.99384 * 296.90795 * 9 7 2 12 12 C 1.54314 * 103.01872 * 206.25516 * 11 9 7 13 13 N 1.47438 * 107.23621 * 22.28342 * 12 11 9 14 14 C 1.46899 * 111.00020 * 123.25559 * 13 12 11 15 15 C 1.50703 * 109.47258 * 69.87917 * 14 13 12 16 16 C 1.38316 * 119.92989 * 260.00170 * 15 14 13 17 17 C 1.38385 * 120.32580 * 179.97438 * 16 15 14 18 18 C 1.37922 * 120.19038 * 359.97438 * 17 16 15 19 19 C 1.39644 * 119.85899 * 0.02562 * 18 17 16 20 20 C 1.47648 * 120.15803 * 179.97438 * 19 18 17 21 21 O 1.21477 * 119.99723 * 179.97438 * 20 19 18 22 22 O 1.34722 * 120.00028 * 359.97438 * 20 19 18 23 23 C 1.38102 * 119.93386 * 80.01826 * 15 14 13 24 24 Cl 1.73598 * 120.09534 * 359.97438 * 23 15 14 25 25 C 1.47850 * 108.56606 * 0.98934 * 13 12 11 26 26 H 0.96995 * 120.00348 * 0.02562 * 1 2 3 27 27 H 0.96703 * 114.00069 * 290.76614 * 10 9 7 28 28 H 1.09003 * 110.70371 * 87.87281 * 11 9 7 29 29 H 1.08994 * 110.85809 * 324.70918 * 11 9 7 30 30 H 1.09003 * 109.89126 * 262.88002 * 12 11 9 31 31 H 1.09000 * 109.89339 * 141.68978 * 12 11 9 32 32 H 1.08996 * 109.47485 * 309.87543 * 14 13 12 33 33 H 1.09007 * 109.47103 * 189.87765 * 14 13 12 34 34 H 1.08001 * 119.83708 * 0.02562 * 16 15 14 35 35 H 1.07997 * 119.90323 * 179.71751 * 17 16 15 36 36 H 1.07999 * 120.06890 * 179.97438 * 18 17 16 37 37 H 0.96698 * 116.99561 * 180.02562 * 22 20 19 38 38 H 1.09000 * 110.37431 * 94.73507 * 25 13 12 39 39 H 1.08998 * 110.37617 * 217.07211 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6023 1.9853 -1.3948 5 1 1.3977 2.6808 0.5917 6 1 3.4898 1.4729 0.8031 7 6 2.0046 -1.1941 -0.0005 8 1 3.0814 -1.1960 0.0820 9 6 1.2554 -2.4966 -0.1162 10 8 0.5275 -2.5579 -1.3443 11 6 0.3140 -2.7061 1.0990 12 6 0.1887 -4.2419 1.1810 13 7 1.3637 -4.8132 0.4977 14 6 2.1120 -5.7048 1.3938 15 6 1.3065 -6.9528 1.6482 16 6 0.5851 -7.0815 2.8213 17 6 -0.1577 -8.2237 3.0631 18 6 -0.1845 -9.2431 2.1345 19 6 0.5409 -9.1215 0.9475 20 6 0.5174 -10.2090 -0.0509 21 8 1.1491 -10.1000 -1.0827 22 8 -0.2047 -11.3222 0.1824 23 6 1.2904 -7.9659 0.7098 24 17 2.1960 -7.8032 -0.7623 25 6 2.2167 -3.7036 0.0209 26 1 -0.4850 0.8400 -0.0004 27 1 -0.2209 -1.9471 -1.3889 28 1 -0.6587 -2.2493 0.9161 29 1 0.7607 -2.3067 2.0094 30 1 -0.7244 -4.5667 0.6822 31 1 0.1765 -4.5579 2.2241 32 1 2.3008 -5.1953 2.3387 33 1 3.0612 -5.9732 0.9298 34 1 0.6010 -6.2862 3.5519 35 1 -0.7148 -8.3189 3.9834 36 1 -0.7646 -10.1339 2.3254 37 1 -0.1888 -12.0068 -0.5003 38 1 2.9980 -3.4857 0.7491 39 1 2.6558 -3.9507 -0.9455 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610621106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:22 Heat of formation + Delta-G solvation = -104.119160 kcal Electronic energy + Delta-G solvation = -25376.141959 eV Core-core repulsion = 21502.838166 eV Total energy + Delta-G solvation = -3873.303793 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58293 -39.31285 -38.05998 -36.40393 -36.02464 -34.89275 -32.27280 -32.12796 -31.19573 -29.17896 -28.08878 -25.70717 -24.95275 -24.02319 -22.03573 -21.23406 -19.96642 -19.56035 -18.02837 -17.46810 -16.95742 -16.38406 -15.90127 -15.80336 -15.15623 -14.86188 -14.74036 -14.57439 -14.11785 -13.85066 -13.43225 -13.24851 -12.61523 -12.54689 -12.37164 -11.94231 -11.81579 -11.68298 -11.48373 -11.39013 -11.32528 -11.24047 -11.08651 -10.90061 -10.71502 -10.40154 -10.29466 -9.89677 -9.82963 -9.25196 -9.15836 -8.77482 -8.58932 -8.06137 -7.62669 -6.19714 -4.27038 0.44017 1.02205 2.23478 2.39198 2.79956 3.23482 3.30122 3.32521 3.46358 4.30152 4.44798 4.60325 4.73573 4.82226 5.01449 5.06134 5.10170 5.32151 5.48272 5.55877 5.71280 5.83407 5.86528 5.95851 6.05366 6.07157 6.13799 6.26557 6.29751 6.45485 6.48754 6.67562 6.87300 7.06523 7.37550 7.49205 7.61141 7.71036 7.73615 7.82886 8.19830 8.74477 9.41379 9.50117 10.87186 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.025360 B = 0.003201 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.843390 B = 8745.844772 C = 9215.989297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.253 3.747 10 O -0.575 6.575 11 C -0.143 4.143 12 C 0.042 3.958 13 N -0.516 5.516 14 C 0.083 3.917 15 C -0.072 4.072 16 C -0.065 4.065 17 C -0.134 4.134 18 C -0.057 4.057 19 C -0.131 4.131 20 C 0.521 3.479 21 O -0.490 6.490 22 O -0.516 6.516 23 C 0.041 3.959 24 Cl -0.015 7.015 25 C 0.060 3.940 26 H 0.265 0.735 27 H 0.373 0.627 28 H 0.077 0.923 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.143 0.857 37 H 0.413 0.587 38 H 0.047 0.953 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.243 -18.641 7.267 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.726 3.274 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.078 0.922 9 C 0.212 3.788 10 O -0.382 6.382 11 C -0.183 4.183 12 C -0.085 4.085 13 N -0.240 5.240 14 C -0.045 4.045 15 C -0.074 4.074 16 C -0.084 4.084 17 C -0.152 4.152 18 C -0.075 4.075 19 C -0.133 4.133 20 C 0.364 3.636 21 O -0.377 6.377 22 O -0.328 6.328 23 C 0.013 3.987 24 Cl 0.014 6.986 25 C -0.066 4.066 26 H 0.075 0.925 27 H 0.222 0.778 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.103 0.897 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.272 0.728 38 H 0.065 0.935 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.836 -18.924 6.578 20.053 hybrid contribution 0.251 1.414 0.378 1.485 sum -0.585 -17.511 6.957 18.851 Atomic orbital electron populations 1.69775 1.05932 1.27303 1.50194 1.24976 0.94946 0.99337 0.93681 0.86521 0.79726 0.82749 0.78442 1.20361 1.21237 1.19940 1.21510 0.93786 0.90876 1.51183 0.92188 1.19517 0.87389 0.90593 0.81274 1.86188 1.47763 1.65142 1.39157 1.23278 1.02628 0.91571 1.00777 1.22894 0.93812 0.96533 0.95269 1.63641 1.07408 1.18501 1.34419 1.21230 0.96037 0.90591 0.96611 1.19788 0.99226 0.95310 0.93055 1.21397 0.93607 0.97453 0.95947 1.21173 1.00322 0.93625 1.00064 1.21364 0.95699 0.99149 0.91304 1.18781 1.04693 0.93510 0.96292 1.20700 0.76094 0.81379 0.85429 1.91001 1.40707 1.79304 1.26709 1.84528 1.67058 1.28901 1.52328 1.20887 0.94794 0.93154 0.89867 1.98433 1.71255 1.97322 1.31546 1.23005 0.95002 0.89584 0.99040 0.92478 0.77835 0.90425 0.92593 0.91832 0.94586 0.93496 0.89670 0.84606 0.84649 0.83964 0.72797 0.93461 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.68 10.85 55.43 0.60 -23.08 16 2 C 0.07 1.93 5.32 -17.82 -0.09 1.83 16 3 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.22 8.26 -34.44 -0.28 -14.51 16 8 H 0.06 1.59 7.79 -52.49 -0.41 1.18 16 9 C 0.25 6.19 0.86 -89.63 -0.08 6.11 16 10 O -0.58 -15.06 13.14 -35.23 -0.46 -15.52 16 11 C -0.14 -3.21 5.33 -24.91 -0.13 -3.34 16 12 C 0.04 0.80 6.40 -2.84 -0.02 0.78 16 13 N -0.52 -9.73 5.15 -232.69 -1.20 -10.92 16 14 C 0.08 1.28 4.11 -4.97 -0.02 1.26 16 15 C -0.07 -1.00 4.94 -104.64 -0.52 -1.51 16 16 C -0.07 -0.72 8.82 -39.50 -0.35 -1.07 16 17 C -0.13 -1.23 10.03 -39.64 -0.40 -1.63 16 18 C -0.06 -0.56 9.62 -39.17 -0.38 -0.94 16 19 C -0.13 -1.66 5.88 -104.95 -0.62 -2.28 16 20 C 0.52 6.45 8.26 34.57 0.29 6.73 16 21 O -0.49 -7.43 14.76 -19.25 -0.28 -7.71 16 22 O -0.52 -4.37 12.68 -40.55 -0.51 -4.88 16 23 C 0.04 0.60 6.35 -39.06 -0.25 0.35 16 24 Cl -0.02 -0.25 24.58 -51.86 -1.27 -1.53 16 25 C 0.06 1.29 5.86 -2.30 -0.01 1.28 16 26 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 27 H 0.37 9.74 7.71 45.56 0.35 10.10 16 28 H 0.08 1.86 7.47 -51.93 -0.39 1.47 16 29 H 0.06 1.27 8.04 -51.93 -0.42 0.86 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 31 H 0.04 0.59 6.19 -51.93 -0.32 0.26 16 32 H 0.05 0.67 7.82 -51.93 -0.41 0.27 16 33 H 0.09 1.29 7.28 -51.92 -0.38 0.91 16 34 H 0.14 1.29 7.63 -52.49 -0.40 0.89 16 35 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 36 H 0.14 1.08 7.61 -52.49 -0.40 0.68 16 37 H 0.41 1.66 9.11 45.56 0.42 2.08 16 38 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 39 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -30.67 339.05 -9.06 -39.73 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -3.16 Total: 10.14 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.86 Total: -6.93 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: -0.60 Total: -34.00 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -1.26 Total: -28.11 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.27 Total: -1.53 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.67 -9.06 -39.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610621106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.389 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds