Wall clock time and date at job start Tue Mar 31 2020 14:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99980 * 2 1 4 4 H 1.48495 * 109.47211 * 269.99733 * 3 2 1 5 5 H 1.48503 * 109.47228 * 29.99293 * 3 2 1 6 6 H 1.48490 * 109.47532 * 149.99321 * 3 2 1 7 7 C 1.38798 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00098 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99966 * 180.02562 * 7 2 1 10 10 C 1.81002 * 99.99710 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47105 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99927 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00159 * 180.02562 * 11 10 9 14 14 C 1.46971 * 120.59172 * 179.97438 * 13 11 10 15 15 C 1.53375 * 108.63033 * 124.79292 * 14 13 11 16 16 N 1.46960 * 108.63872 * 49.42178 * 15 14 13 17 17 C 1.34777 * 120.59618 * 124.74913 * 16 15 14 18 18 O 1.21620 * 119.99571 * 352.71472 * 17 16 15 19 19 C 1.47416 * 120.00484 * 172.71380 * 17 16 15 20 20 C 1.36091 * 126.45173 * 172.78217 * 19 17 16 21 21 O 1.34259 * 106.94882 * 180.02562 * 20 19 17 22 22 C 1.34050 * 108.22665 * 0.02562 * 21 20 19 23 23 N 1.29940 * 109.24422 * 359.72308 * 22 21 20 24 24 C 1.46964 * 118.81152 * 304.77176 * 16 15 14 25 25 C 1.46960 * 120.59403 * 0.02562 * 13 11 10 26 26 H 0.96999 * 120.00532 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47466 * 60.00153 * 10 9 7 28 28 H 1.09002 * 109.47388 * 299.99583 * 10 9 7 29 29 H 1.08991 * 109.60918 * 5.05078 * 14 13 11 30 30 H 1.08997 * 109.74937 * 244.61881 * 14 13 11 31 31 H 1.09006 * 109.60567 * 169.16899 * 15 14 13 32 32 H 1.08999 * 109.60908 * 289.67556 * 15 14 13 33 33 H 1.08000 * 126.52226 * 359.97438 * 20 19 17 34 34 H 1.08001 * 125.37541 * 179.97438 * 22 21 20 35 35 H 1.08993 * 109.60914 * 295.48041 * 24 16 15 36 36 H 1.09000 * 109.60857 * 174.96505 * 24 16 15 37 37 H 1.09000 * 109.60806 * 354.95308 * 25 13 11 38 38 H 1.08999 * 109.60983 * 115.46539 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0009 11 6 5.5732 -3.2324 0.0021 12 8 6.3441 -2.2961 0.0025 13 7 6.0458 -4.4945 0.0016 14 6 7.4929 -4.7513 0.0021 15 6 7.8299 -5.6541 1.1953 16 7 6.9076 -6.7982 1.1938 17 6 7.3802 -8.0604 1.1925 18 8 8.5719 -8.2633 1.0590 19 6 6.4528 -9.1950 1.3530 20 6 6.7621 -10.5151 1.2350 21 8 5.6309 -11.2034 1.4565 22 6 4.6480 -10.3262 1.7045 23 7 5.1274 -9.1196 1.6511 24 6 5.4605 -6.5414 1.1933 25 6 5.1235 -5.6386 -0.0007 26 1 -0.4851 0.8400 -0.0004 27 1 3.6442 -3.4313 -0.8893 28 1 3.6435 -3.4317 0.8907 29 1 8.0317 -3.8082 0.0933 30 1 7.7792 -5.2480 -0.9249 31 1 8.8559 -6.0112 1.1055 32 1 7.7151 -5.0929 2.1226 33 1 7.7326 -10.9298 1.0060 34 1 3.6210 -10.5822 1.9190 35 1 5.1771 -6.0434 2.1204 36 1 4.9217 -7.4845 1.1021 37 1 4.0975 -5.2815 0.0886 38 1 5.2388 -6.1997 -0.9280 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686356525.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:41 Heat of formation + Delta-G solvation = -15.302395 kcal Electronic energy + Delta-G solvation = -24730.120748 eV Core-core repulsion = 20895.004796 eV Total energy + Delta-G solvation = -3835.115952 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.96825 -40.54777 -39.27773 -37.01585 -35.51297 -34.02808 -32.45300 -32.02407 -30.83598 -29.51335 -27.71861 -25.64481 -24.81769 -24.04036 -23.14222 -22.38421 -20.67005 -19.30029 -18.16398 -17.61045 -17.26167 -17.16854 -16.56234 -16.25465 -15.80494 -15.59423 -15.43993 -15.42492 -14.97172 -14.37004 -14.09081 -13.95318 -13.80876 -13.48174 -13.38436 -12.81275 -12.73157 -12.18000 -12.02695 -11.85839 -11.73933 -11.54845 -11.26949 -11.02019 -10.82986 -10.60581 -10.28908 -9.87047 -9.72774 -9.51851 -9.36367 -9.01633 -8.50820 -8.43841 -6.93780 -6.30380 -4.02267 0.63289 1.50673 2.15978 2.45818 2.74703 2.82361 2.92742 3.16812 3.32423 3.49206 3.50102 3.58212 4.14883 4.31786 4.33580 4.50880 4.65520 4.75043 4.96504 4.97579 5.02991 5.08354 5.08797 5.13408 5.14374 5.27082 5.41459 5.56998 5.64334 5.70178 5.75894 5.92566 5.95340 6.23956 6.46158 6.83649 7.04624 7.39747 7.71554 7.92637 8.38012 8.39863 9.15925 10.78815 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.022077 B = 0.002740 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.981636 B =10214.956160 C =11335.729871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.122 4.122 11 C 0.534 3.466 12 O -0.517 6.517 13 N -0.620 5.620 14 C 0.101 3.899 15 C 0.098 3.902 16 N -0.593 5.593 17 C 0.602 3.398 18 O -0.539 6.539 19 C -0.072 4.072 20 C 0.019 3.981 21 O -0.197 6.197 22 C 0.185 3.815 23 N -0.465 5.465 24 C 0.065 3.935 25 C 0.094 3.906 26 H 0.271 0.729 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.231 0.769 34 H 0.257 0.743 35 H 0.074 0.926 36 H 0.147 0.853 37 H 0.103 0.897 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.259 -24.168 2.948 26.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.272 4.272 11 C 0.322 3.678 12 O -0.392 6.392 13 N -0.357 5.357 14 C -0.022 4.022 15 C -0.025 4.025 16 N -0.324 5.324 17 C 0.390 3.610 18 O -0.417 6.417 19 C -0.191 4.191 20 C -0.055 4.055 21 O -0.082 6.082 22 C -0.043 4.043 23 N -0.195 5.195 24 C -0.058 4.058 25 C -0.030 4.030 26 H 0.081 0.919 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.095 0.905 33 H 0.247 0.753 34 H 0.273 0.727 35 H 0.093 0.907 36 H 0.164 0.836 37 H 0.121 0.879 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.506 -22.220 2.988 25.672 hybrid contribution -0.705 -0.871 -0.091 1.125 sum 11.801 -23.092 2.896 26.094 Atomic orbital electron populations 1.69933 1.05911 1.27789 1.48067 1.24706 0.94444 0.98963 0.93166 0.86738 0.81907 0.83291 0.79945 1.19212 1.19943 1.15912 1.22301 0.88197 0.97524 1.58798 0.89367 1.84819 1.09352 1.00003 1.97406 1.23309 0.93965 1.04342 1.05616 1.20348 0.90729 0.81733 0.74964 1.90691 1.58725 1.41600 1.48153 1.48068 1.06386 1.05758 1.75479 1.21891 0.81848 1.00802 0.97702 1.22124 0.94916 0.86251 0.99232 1.47816 1.08206 1.04845 1.71572 1.16822 0.86136 0.81514 0.76558 1.90824 1.15244 1.84530 1.51100 1.21750 0.91609 0.94523 1.11217 1.25316 0.90457 0.90411 0.99289 1.84470 1.17669 1.39878 1.66213 1.28363 0.95689 0.81654 0.98549 1.70543 1.07733 1.23375 1.17830 1.23124 0.80052 1.03997 0.98643 1.22200 0.94935 0.87322 0.98558 0.91926 0.88498 0.88411 0.87545 0.91215 0.87761 0.90451 0.75292 0.72696 0.90732 0.83593 0.87873 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.35 13.97 55.49 0.78 -25.57 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.68 27.74 -169.99 -4.72 16.96 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 7 C -0.52 -14.81 10.04 30.94 0.31 -14.50 16 8 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 9 S -0.14 -3.58 18.55 -107.50 -1.99 -5.57 16 10 C -0.12 -2.33 4.50 36.01 0.16 -2.17 16 11 C 0.53 9.57 7.72 -10.99 -0.08 9.49 16 12 O -0.52 -11.09 15.27 5.55 0.08 -11.01 16 13 N -0.62 -8.48 2.95 -172.45 -0.51 -8.99 16 14 C 0.10 1.21 6.59 -3.59 -0.02 1.19 16 15 C 0.10 1.06 6.60 -3.60 -0.02 1.04 16 16 N -0.59 -6.49 2.95 -173.72 -0.51 -7.01 16 17 C 0.60 6.84 7.67 -12.52 -0.10 6.75 16 18 O -0.54 -7.27 16.32 5.26 0.09 -7.18 16 19 C -0.07 -0.65 6.67 -83.02 -0.55 -1.20 16 20 C 0.02 0.13 11.95 29.96 0.36 0.48 16 21 O -0.20 -1.09 10.73 6.50 0.07 -1.02 16 22 C 0.19 0.86 13.19 51.96 0.69 1.54 16 23 N -0.47 -3.64 7.83 -11.48 -0.09 -3.73 16 24 C 0.07 0.65 6.29 -3.56 -0.02 0.63 16 25 C 0.09 1.01 6.51 -3.57 -0.02 0.99 16 26 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.10 1.72 7.91 -51.92 -0.41 1.31 16 28 H 0.10 1.72 7.72 -51.92 -0.40 1.32 16 29 H 0.11 1.38 6.99 -51.93 -0.36 1.02 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.10 6.99 -51.93 -0.36 0.73 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.23 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.26 -0.05 8.06 -52.49 -0.42 -0.48 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.15 1.34 4.06 -61.54 -0.25 1.09 16 37 H 0.10 1.07 5.91 -51.93 -0.31 0.77 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 335.10 15.07 5.05 5.05 Total: -1.00 -36.88 335.10 -5.37 -42.25 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -4.21 Total: -1.10 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 0.59 Total: 6.92 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -0.33 Total: -45.30 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.24 Total: -19.21 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.72 Total: 16.96 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.57 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.88 -5.37 -42.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686356525.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.948 kcal (2) G-P(sol) polarization free energy of solvation -36.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds