Wall clock time and date at job start Tue Mar 31 2020 14:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 119.99980 * 2 1 4 4 H 1.48495 * 109.47211 * 269.99733 * 3 2 1 5 5 H 1.48503 * 109.47228 * 29.99293 * 3 2 1 6 6 H 1.48490 * 109.47532 * 149.99321 * 3 2 1 7 7 C 1.38798 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00098 * 0.02562 * 7 2 1 9 9 S 1.76202 * 119.99966 * 180.02562 * 7 2 1 10 10 C 1.81002 * 99.99710 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47105 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99927 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00159 * 180.02562 * 11 10 9 14 14 C 1.46971 * 120.59172 * 179.97438 * 13 11 10 15 15 C 1.53375 * 108.63033 * 124.79292 * 14 13 11 16 16 N 1.46960 * 108.63872 * 49.42178 * 15 14 13 17 17 C 1.34777 * 120.59618 * 124.74913 * 16 15 14 18 18 O 1.21620 * 119.99571 * 352.71472 * 17 16 15 19 19 C 1.47416 * 120.00484 * 172.71380 * 17 16 15 20 20 C 1.36091 * 126.45173 * 172.78217 * 19 17 16 21 21 O 1.34259 * 106.94882 * 180.02562 * 20 19 17 22 22 C 1.34050 * 108.22665 * 0.02562 * 21 20 19 23 23 N 1.29940 * 109.24422 * 359.72308 * 22 21 20 24 24 C 1.46964 * 118.81152 * 304.77176 * 16 15 14 25 25 C 1.46960 * 120.59403 * 0.02562 * 13 11 10 26 26 H 0.96999 * 120.00532 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47466 * 60.00153 * 10 9 7 28 28 H 1.09002 * 109.47388 * 299.99583 * 10 9 7 29 29 H 1.08991 * 109.60918 * 5.05078 * 14 13 11 30 30 H 1.08997 * 109.74937 * 244.61881 * 14 13 11 31 31 H 1.09006 * 109.60567 * 169.16899 * 15 14 13 32 32 H 1.08999 * 109.60908 * 289.67556 * 15 14 13 33 33 H 1.08000 * 126.52226 * 359.97438 * 20 19 17 34 34 H 1.08001 * 125.37541 * 179.97438 * 22 21 20 35 35 H 1.08993 * 109.60914 * 295.48041 * 24 16 15 36 36 H 1.09000 * 109.60857 * 174.96505 * 24 16 15 37 37 H 1.09000 * 109.60806 * 354.95308 * 25 13 11 38 38 H 1.08999 * 109.60983 * 115.46539 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4704 -2.1373 0.0005 9 16 3.7724 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0009 11 6 5.5732 -3.2324 0.0021 12 8 6.3441 -2.2961 0.0025 13 7 6.0458 -4.4945 0.0016 14 6 7.4929 -4.7513 0.0021 15 6 7.8299 -5.6541 1.1953 16 7 6.9076 -6.7982 1.1938 17 6 7.3802 -8.0604 1.1925 18 8 8.5719 -8.2633 1.0590 19 6 6.4528 -9.1950 1.3530 20 6 6.7621 -10.5151 1.2350 21 8 5.6309 -11.2034 1.4565 22 6 4.6480 -10.3262 1.7045 23 7 5.1274 -9.1196 1.6511 24 6 5.4605 -6.5414 1.1933 25 6 5.1235 -5.6386 -0.0007 26 1 -0.4851 0.8400 -0.0004 27 1 3.6442 -3.4313 -0.8893 28 1 3.6435 -3.4317 0.8907 29 1 8.0317 -3.8082 0.0933 30 1 7.7792 -5.2480 -0.9249 31 1 8.8559 -6.0112 1.1055 32 1 7.7151 -5.0929 2.1226 33 1 7.7326 -10.9298 1.0060 34 1 3.6210 -10.5822 1.9190 35 1 5.1771 -6.0434 2.1204 36 1 4.9217 -7.4845 1.1021 37 1 4.0975 -5.2815 0.0886 38 1 5.2388 -6.1997 -0.9280 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001686356525.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:41 Heat of formation + Delta-G solvation = -43.266493 kcal Electronic energy + Delta-G solvation = -24731.333362 eV Core-core repulsion = 20895.004796 eV Total energy + Delta-G solvation = -3836.328566 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.43071 -41.56440 -40.42545 -38.12114 -36.08161 -35.08234 -34.66060 -32.98866 -31.37680 -30.87805 -28.74507 -27.83551 -25.64572 -24.84853 -23.65170 -23.28274 -21.54898 -20.38234 -19.70031 -18.72203 -18.25353 -17.75298 -17.43904 -17.30511 -17.09851 -16.85498 -16.81042 -16.34804 -15.89311 -15.70856 -15.13935 -15.07532 -14.93603 -14.70945 -14.58715 -14.40510 -13.64092 -13.52058 -13.34353 -13.01798 -13.00524 -12.74247 -12.66758 -12.44288 -12.34477 -11.86235 -11.62427 -11.16586 -11.11609 -10.89512 -10.52244 -10.44470 -10.16821 -9.47753 -8.99665 -8.50785 -6.21547 0.09127 0.95744 1.01639 1.31736 1.42822 1.46729 1.51024 1.65251 1.86462 2.07272 2.15588 2.25468 2.68004 2.87681 2.99862 3.43881 3.57721 3.75684 3.87198 3.91981 4.06793 4.14668 4.21831 4.29470 4.38505 4.43384 4.53679 4.59473 4.61357 4.70973 4.76621 4.91690 5.18913 5.34073 5.55415 5.71927 6.05657 6.12764 6.20500 6.47209 6.90040 6.94715 7.00899 8.61465 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.022077 B = 0.002740 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.981636 B =10214.956160 C =11335.729871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.260 1.260 6 H -0.237 1.237 7 C -0.525 4.525 8 H 0.065 0.935 9 S -0.178 6.178 10 C -0.106 4.106 11 C 0.537 3.463 12 O -0.559 6.559 13 N -0.608 5.608 14 C 0.103 3.897 15 C 0.104 3.896 16 N -0.597 5.597 17 C 0.600 3.400 18 O -0.568 6.568 19 C -0.105 4.105 20 C 0.036 3.964 21 O -0.196 6.196 22 C 0.206 3.794 23 N -0.496 5.496 24 C 0.072 3.928 25 C 0.090 3.910 26 H 0.277 0.723 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.250 0.750 34 H 0.301 0.699 35 H 0.069 0.931 36 H 0.161 0.839 37 H 0.109 0.891 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.400 -26.147 3.059 28.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.184 1.184 6 H -0.161 1.161 7 C -0.673 4.673 8 H 0.084 0.916 9 S 0.049 5.951 10 C -0.257 4.257 11 C 0.324 3.676 12 O -0.437 6.437 13 N -0.343 5.343 14 C -0.020 4.020 15 C -0.019 4.019 16 N -0.328 5.328 17 C 0.389 3.611 18 O -0.448 6.448 19 C -0.223 4.223 20 C -0.039 4.039 21 O -0.081 6.081 22 C -0.022 4.022 23 N -0.225 5.225 24 C -0.051 4.051 25 C -0.033 4.033 26 H 0.086 0.914 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.126 0.874 32 H 0.093 0.907 33 H 0.266 0.734 34 H 0.316 0.684 35 H 0.087 0.913 36 H 0.178 0.822 37 H 0.128 0.872 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.635 -24.240 3.103 27.511 hybrid contribution -0.759 -0.519 -0.112 0.926 sum 11.876 -24.760 2.991 27.623 Atomic orbital electron populations 1.70005 1.07225 1.28991 1.49212 1.25520 0.95236 1.02129 0.92973 0.85902 0.80716 0.79825 0.80158 1.18799 1.18401 1.16127 1.22434 0.90013 0.96749 1.58097 0.91641 1.84769 1.06710 1.06048 1.97566 1.23278 0.95505 0.99623 1.07300 1.20079 0.89738 0.82678 0.75065 1.90679 1.59263 1.43192 1.50610 1.48059 1.07679 1.05088 1.73451 1.21973 0.80498 1.00647 0.98857 1.22013 0.95280 0.86147 0.98478 1.47894 1.08474 1.04868 1.71550 1.17149 0.86203 0.82019 0.75692 1.90797 1.16529 1.84998 1.52506 1.21542 0.92183 0.94520 1.14010 1.25680 0.91314 0.89665 0.97245 1.84523 1.17625 1.39845 1.66077 1.29335 0.96670 0.80541 0.95629 1.70387 1.07317 1.25170 1.19618 1.23148 0.79732 1.04364 0.97838 1.22451 0.94578 0.86404 0.99820 0.91375 0.86821 0.86670 0.88643 0.89965 0.87416 0.90677 0.73392 0.68420 0.91272 0.82217 0.87245 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.20 13.97 21.65 0.30 -54.90 16 2 C 0.05 2.72 5.50 84.86 0.47 3.19 16 3 Si 0.91 44.74 27.74 68.60 1.90 46.65 16 4 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.24 -11.65 6.74 99.48 0.67 -10.98 16 7 C -0.53 -30.09 10.04 67.95 0.68 -29.40 16 8 H 0.07 3.92 8.03 -2.91 -0.02 3.90 16 9 S -0.18 -8.90 18.55 -56.49 -1.05 -9.95 16 10 C -0.11 -3.95 4.50 71.24 0.32 -3.63 16 11 C 0.54 18.77 7.72 87.66 0.68 19.44 16 12 O -0.56 -23.95 15.27 -3.04 -0.05 -24.00 16 13 N -0.61 -15.81 2.95 -817.89 -2.41 -18.22 16 14 C 0.10 2.38 6.59 86.42 0.57 2.95 16 15 C 0.10 2.18 6.60 86.42 0.57 2.75 16 16 N -0.60 -12.38 2.95 -821.77 -2.42 -14.80 16 17 C 0.60 13.03 7.67 86.66 0.66 13.70 16 18 O -0.57 -14.99 16.32 -4.09 -0.07 -15.06 16 19 C -0.10 -1.71 6.67 40.41 0.27 -1.44 16 20 C 0.04 0.38 11.95 67.32 0.80 1.19 16 21 O -0.20 -1.57 10.73 0.36 0.00 -1.57 16 22 C 0.21 1.20 13.19 130.52 1.72 2.93 16 23 N -0.50 -6.57 7.83 -305.15 -2.39 -8.96 16 24 C 0.07 1.32 6.29 86.44 0.54 1.86 16 25 C 0.09 1.76 6.51 86.44 0.56 2.32 16 26 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 27 H 0.11 3.86 7.91 -2.40 -0.02 3.84 16 28 H 0.12 3.89 7.72 -2.39 -0.02 3.87 16 29 H 0.10 2.47 6.99 -2.39 -0.02 2.45 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.11 2.22 6.99 -2.38 -0.02 2.20 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.25 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.30 -1.49 8.06 -2.91 -0.02 -1.52 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.16 2.61 4.06 -21.37 -0.09 2.52 16 37 H 0.11 2.02 5.91 -2.39 -0.01 2.01 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -80.38 335.10 2.67 -77.71 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 0.99 Total: 7.24 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 7.85 Total: 15.85 kcal Atomic # 7 Polarization: -89.96 SS G_CDS: -6.92 Total: -96.88 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -0.11 Total: -40.62 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.90 Total: 46.65 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.05 Total: -9.95 kcal Total: -80.38 2.67 -77.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686356525.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.439 kcal (2) G-P(sol) polarization free energy of solvation -80.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds