Wall clock time and date at job start Tue Mar 31 2020 13:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.20821 * 120.00452 * 2 1 4 4 O 1.34234 * 119.99492 * 179.97438 * 2 1 3 5 5 C 1.45200 * 116.99658 * 180.02562 * 4 2 1 6 6 C 1.50696 * 109.47232 * 180.02562 * 5 4 2 7 7 O 1.21296 * 119.99776 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00203 * 179.97438 * 6 5 4 9 9 C 1.46499 * 120.00038 * 4.73904 * 8 6 5 10 10 C 1.50700 * 109.47096 * 269.99719 * 9 8 6 11 11 H 1.07998 * 119.99689 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00148 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99763 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00325 * 179.97438 * 12 10 9 15 15 H 1.48509 * 109.47000 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47100 * 119.99885 * 14 12 10 17 17 H 1.48502 * 109.47229 * 240.00613 * 14 12 10 18 18 C 1.39976 * 120.00158 * 184.73644 * 8 6 5 19 19 C 1.38884 * 120.05682 * 67.91189 * 18 8 6 20 20 C 1.38086 * 119.93991 * 179.97438 * 19 18 8 21 21 C 1.38402 * 120.06132 * 0.02562 * 20 19 18 22 22 Cl 1.73603 * 119.94419 * 180.27812 * 21 20 19 23 23 C 1.38366 * 120.11097 * 0.02562 * 21 20 19 24 24 C 1.50708 * 119.96696 * 180.02562 * 23 21 20 25 25 C 1.38123 * 120.05816 * 359.97438 * 23 21 20 26 26 H 1.08999 * 109.47328 * 270.00353 * 1 2 3 27 27 H 1.09005 * 109.46582 * 30.00330 * 1 2 3 28 28 H 1.09002 * 109.46892 * 150.00035 * 1 2 3 29 29 H 1.08999 * 109.47596 * 59.99630 * 5 4 2 30 30 H 1.09006 * 109.46949 * 300.00259 * 5 4 2 31 31 H 1.09008 * 109.46948 * 29.99800 * 9 8 6 32 32 H 1.08998 * 109.47370 * 149.99301 * 9 8 6 33 33 H 0.97009 * 119.99858 * 179.97438 * 13 12 10 34 34 H 1.07994 * 120.03116 * 359.97438 * 19 18 8 35 35 H 1.08003 * 119.97220 * 180.02562 * 20 19 18 36 36 H 1.08995 * 109.47053 * 90.00169 * 24 23 21 37 37 H 1.09005 * 109.46445 * 209.99738 * 24 23 21 38 38 H 1.08997 * 109.47071 * 330.00008 * 24 23 21 39 39 H 1.08008 * 120.02867 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1112 1.0463 0.0000 4 8 2.1781 -1.1626 0.0005 5 6 3.6281 -1.0866 0.0011 6 6 4.2041 -2.4792 0.0010 7 8 3.4651 -3.4411 0.0010 8 7 5.5402 -2.6558 0.0009 9 6 6.4321 -1.4983 0.1057 10 6 6.7533 -0.9851 -1.2743 11 1 6.3346 -1.4721 -2.1425 12 6 7.5809 0.1069 -1.4284 13 7 8.0904 0.7002 -0.3710 14 14 7.9796 0.7427 -3.1389 15 1 7.2869 -0.0937 -4.1519 16 1 7.5220 2.1500 -3.2631 17 1 9.4464 0.6775 -3.3619 18 6 6.0757 -3.9452 -0.0993 19 6 5.9363 -4.6667 -1.2778 20 6 6.4660 -5.9383 -1.3742 21 6 7.1350 -6.4941 -0.2975 22 17 7.8060 -8.0901 -0.4245 23 6 7.2743 -5.7777 0.8780 24 6 8.0039 -6.3859 2.0481 25 6 6.7464 -4.5054 0.9796 26 1 -0.3634 0.0001 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 3.9638 -0.5542 0.8910 30 1 3.9644 -0.5546 -0.8889 31 1 5.9417 -0.7127 0.6806 32 1 7.3537 -1.7940 0.6071 33 1 8.6730 1.4682 -0.4795 34 1 5.4140 -4.2337 -2.1180 35 1 6.3582 -6.4997 -2.2905 36 1 9.0632 -6.1374 1.9847 37 1 7.5930 -5.9910 2.9774 38 1 7.8829 -7.4689 2.0286 39 1 6.8551 -3.9469 1.8976 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800984657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:21 Heat of formation + Delta-G solvation = -118.856710 kcal Electronic energy + Delta-G solvation = -25055.618862 eV Core-core repulsion = 21181.676001 eV Total energy + Delta-G solvation = -3873.942861 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.90789 -41.24138 -39.80648 -37.74510 -37.39041 -36.76410 -34.73013 -33.69208 -32.00611 -31.14428 -29.41097 -28.77707 -27.85186 -25.12995 -23.90013 -23.02987 -22.16168 -20.44281 -18.92020 -18.82250 -18.09993 -18.06471 -17.80210 -17.51194 -17.01656 -16.80788 -16.23801 -15.82378 -15.31642 -15.06016 -14.72366 -14.56315 -14.26232 -14.19867 -13.88910 -13.60584 -13.51724 -13.36867 -13.32044 -13.12553 -13.04933 -12.96644 -12.73778 -12.50560 -12.39378 -12.14032 -11.94463 -11.86757 -11.70631 -11.67968 -11.07353 -10.66552 -10.19964 -9.85253 -9.30844 -8.28806 -6.43280 0.01784 0.24788 1.09538 1.12404 1.25894 1.36212 1.36940 1.41336 1.50417 2.23949 2.38105 2.52949 3.03498 3.41180 3.71399 3.73813 3.77548 3.96870 4.14127 4.16593 4.22439 4.37069 4.50506 4.58498 4.63485 4.71579 4.78702 4.81289 4.90821 4.98488 5.04449 5.18153 5.26718 5.36436 5.40701 5.51988 5.62189 5.86598 5.91622 6.20615 6.62465 6.66433 7.00041 7.28878 8.77714 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.009327 B = 0.004401 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3001.156297 B = 6360.103494 C = 8430.223922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.450 3.550 3 O -0.551 6.551 4 O -0.347 6.347 5 C 0.063 3.937 6 C 0.526 3.474 7 O -0.555 6.555 8 N -0.555 5.555 9 C 0.250 3.750 10 C -0.551 4.551 11 H 0.057 0.943 12 C 0.026 3.974 13 N -0.915 5.915 14 Si 0.954 3.046 15 H -0.269 1.269 16 H -0.278 1.278 17 H -0.276 1.276 18 C 0.150 3.850 19 C -0.118 4.118 20 C -0.092 4.092 21 C -0.049 4.049 22 Cl -0.055 7.055 23 C -0.065 4.065 24 C -0.114 4.114 25 C -0.122 4.122 26 H 0.129 0.871 27 H 0.119 0.881 28 H 0.111 0.889 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.037 0.963 32 H 0.032 0.968 33 H 0.270 0.730 34 H 0.121 0.879 35 H 0.157 0.843 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.615 -10.221 2.380 12.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.296 3.704 3 O -0.441 6.441 4 O -0.263 6.263 5 C -0.014 4.014 6 C 0.315 3.685 7 O -0.434 6.434 8 N -0.283 5.283 9 C 0.131 3.869 10 C -0.589 4.589 11 H 0.075 0.925 12 C -0.175 4.175 13 N -0.554 5.554 14 Si 0.779 3.221 15 H -0.193 1.193 16 H -0.204 1.204 17 H -0.201 1.201 18 C 0.060 3.940 19 C -0.138 4.138 20 C -0.111 4.111 21 C -0.076 4.076 22 Cl -0.026 7.026 23 C -0.067 4.067 24 C -0.170 4.170 25 C -0.141 4.141 26 H 0.147 0.853 27 H 0.137 0.863 28 H 0.130 0.870 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.174 0.826 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.628 -10.392 2.441 12.565 hybrid contribution 0.764 0.939 -0.936 1.530 sum -5.863 -9.453 1.505 11.225 Atomic orbital electron populations 1.21784 0.81927 1.07431 1.07777 1.25192 0.94140 0.80286 0.70767 1.90719 1.71963 1.34159 1.47259 1.86528 1.19915 1.36024 1.83797 1.22545 0.78144 0.94924 1.05767 1.20153 0.81952 0.90446 0.75991 1.90657 1.59161 1.42855 1.50727 1.45715 1.05359 1.06681 1.70583 1.19353 0.88927 0.81539 0.97108 1.21611 1.30377 1.14075 0.92852 0.92524 1.25604 0.95117 0.96317 1.00482 1.69992 1.32667 1.22153 1.30585 0.85563 0.78215 0.78271 0.80063 1.19314 1.20391 1.20141 1.17907 0.96875 0.85029 0.94211 1.21212 1.00718 0.95121 0.96753 1.21041 0.96862 0.94324 0.98908 1.20830 1.02475 0.88424 0.95882 1.98331 1.84018 1.22273 1.97986 1.19857 0.98168 0.92918 0.95737 1.20917 1.00192 1.01586 0.94303 1.21162 0.99712 0.95029 0.98213 0.85260 0.86267 0.87007 0.87883 0.87879 0.94547 0.94971 0.92116 0.86105 0.82558 0.89579 0.89972 0.89854 0.84465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 10.41 71.24 0.74 -1.38 16 2 C 0.45 13.50 8.07 71.24 0.57 14.08 16 3 O -0.55 -20.78 16.85 21.98 0.37 -20.41 16 4 O -0.35 -12.17 9.76 -45.10 -0.44 -12.61 16 5 C 0.06 2.47 4.61 71.23 0.33 2.79 16 6 C 0.53 22.17 7.61 87.66 0.67 22.84 16 7 O -0.56 -25.14 16.26 15.72 0.26 -24.89 16 8 N -0.55 -23.50 2.51 -635.26 -1.59 -25.09 16 9 C 0.25 11.73 4.88 85.63 0.42 12.15 16 10 C -0.55 -28.23 9.16 25.60 0.23 -28.00 16 11 H 0.06 2.94 7.81 -2.91 -0.02 2.92 16 12 C 0.03 1.36 5.46 84.65 0.46 1.82 16 13 N -0.92 -49.97 13.29 21.45 0.28 -49.68 16 14 Si 0.95 41.83 29.54 68.60 2.03 43.86 16 15 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 16 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 18 C 0.15 5.88 4.75 38.14 0.18 6.07 16 19 C -0.12 -4.29 9.55 22.39 0.21 -4.08 16 20 C -0.09 -2.76 9.82 22.27 0.22 -2.54 16 21 C -0.05 -1.39 6.32 22.34 0.14 -1.25 16 22 Cl -0.06 -1.26 27.29 -2.72 -0.07 -1.34 16 23 C -0.07 -1.87 5.88 -19.86 -0.12 -1.99 16 24 C -0.11 -2.40 9.61 71.24 0.68 -1.72 16 25 C -0.12 -4.12 9.34 22.39 0.21 -3.91 16 26 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.10 3.94 7.25 -2.39 -0.02 3.92 16 30 H 0.10 4.30 7.90 -2.38 -0.02 4.28 16 31 H 0.04 1.75 6.47 -2.38 -0.02 1.74 16 32 H 0.03 1.59 7.86 -2.39 -0.02 1.57 16 33 H 0.27 13.95 8.31 -92.70 -0.77 13.18 16 34 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 35 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.55 8.09 -2.38 -0.02 1.53 16 38 H 0.08 1.57 6.90 -2.39 -0.02 1.56 16 39 H 0.14 4.38 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -66.20 359.60 6.86 -59.34 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 1.07 Total: 15.93 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 4.96 Total: 14.89 kcal Atomic # 7 Polarization: -73.46 SS G_CDS: -1.31 Total: -74.77 kcal Atomic # 8 Polarization: -58.09 SS G_CDS: 0.19 Total: -57.91 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.07 Total: -1.34 kcal Total: -66.20 6.86 -59.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800984657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.517 kcal (2) G-P(sol) polarization free energy of solvation -66.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds