Wall clock time and date at job start Tue Mar 31 2020 14:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86798 * 120.00078 * 2 1 4 4 H 1.48499 * 109.47434 * 269.99640 * 3 2 1 5 5 H 1.48497 * 109.47113 * 30.00162 * 3 2 1 6 6 H 1.48504 * 109.47003 * 149.99729 * 3 2 1 7 7 C 1.39909 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00003 * 175.56190 * 7 2 1 9 9 C 1.41146 * 120.00076 * 355.56780 * 7 2 1 10 10 C 1.40870 * 120.16497 * 214.78054 * 9 7 2 11 11 C 1.36370 * 119.83449 * 180.02562 * 10 9 7 12 12 C 1.39490 * 120.16565 * 0.02562 * 11 10 9 13 13 N 1.39238 * 119.83143 * 179.97438 * 12 11 10 14 14 C 1.34775 * 120.00135 * 35.29313 * 13 12 11 15 15 O 1.21283 * 120.00037 * 355.69827 * 14 13 12 16 16 C 1.50695 * 120.00404 * 175.70725 * 14 13 12 17 17 O 1.42902 * 109.47622 * 179.97438 * 16 14 13 18 18 C 1.35661 * 117.00128 * 179.97438 * 17 16 14 19 19 C 1.39083 * 119.88548 * 359.72389 * 18 17 16 20 20 C 1.37116 * 120.11613 * 179.71802 * 19 18 17 21 21 C 1.40047 * 119.87783 * 0.57973 * 20 19 18 22 22 C 1.46860 * 120.11138 * 179.67249 * 21 20 19 23 23 O 1.21295 * 119.99663 * 0.02562 * 22 21 20 24 24 C 1.40037 * 119.77487 * 359.69705 * 21 20 19 25 25 C 1.37118 * 119.88309 * 0.02562 * 24 21 20 26 26 C 1.39482 * 120.32975 * 0.25256 * 12 11 10 27 27 C 1.36367 * 120.16979 * 359.48538 * 26 12 11 28 28 H 0.96999 * 120.00213 * 0.02562 * 1 2 3 29 29 H 1.08012 * 120.08535 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.92172 * 179.97438 * 11 10 9 31 31 H 0.96995 * 120.00208 * 215.28157 * 13 12 11 32 32 H 1.09000 * 109.47569 * 59.99358 * 16 14 13 33 33 H 1.09004 * 109.47022 * 299.99642 * 16 14 13 34 34 H 1.07998 * 119.93809 * 0.02562 * 19 18 17 35 35 H 1.07992 * 120.06303 * 180.27198 * 20 19 18 36 36 H 1.07997 * 120.00049 * 180.02562 * 22 21 20 37 37 H 1.08002 * 120.05592 * 179.97438 * 24 21 20 38 38 H 1.07995 * 119.94097 * 180.02562 * 25 24 21 39 39 H 1.07999 * 119.90649 * 179.74741 * 26 12 11 40 40 H 1.08004 * 120.08563 * 180.25856 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4903 2.0464 -1.4000 5 1 1.4402 2.6526 0.7001 6 1 3.5403 1.4401 0.7001 7 6 2.0082 -1.2117 0.0005 8 1 3.0857 -1.2131 -0.0718 9 6 1.3056 -2.4321 0.0956 10 6 1.8648 -3.5180 0.7974 11 6 1.1803 -4.6943 0.8846 12 6 -0.0703 -4.8240 0.2804 13 7 -0.7628 -6.0283 0.3732 14 6 -0.6812 -6.7677 1.4971 15 8 0.0559 -6.4241 2.3969 16 6 -1.5057 -8.0214 1.6359 17 8 -1.2462 -8.6244 2.9052 18 6 -1.9138 -9.7702 3.1908 19 6 -2.8074 -10.3005 2.2663 20 6 -3.4805 -11.4615 2.5477 21 6 -3.2758 -12.1069 3.7736 22 6 -3.9993 -13.3468 4.0833 23 8 -4.7754 -13.8137 3.2765 24 6 -2.3792 -11.5657 4.7033 25 6 -1.7070 -10.4073 4.4097 26 6 -0.6278 -3.7551 -0.4212 27 6 0.0424 -2.5710 -0.5123 28 1 -0.4850 0.8400 -0.0004 29 1 2.8336 -3.4195 1.2647 30 1 1.6079 -5.5279 1.4220 31 1 -1.3041 -6.3352 -0.3708 32 1 -1.2418 -8.7197 0.8416 33 1 -2.5639 -7.7704 1.5621 34 1 -2.9678 -9.7995 1.3231 35 1 -4.1708 -11.8748 1.8275 36 1 -3.8404 -13.8428 5.0294 37 1 -2.2183 -12.0595 5.6503 38 1 -1.0151 -9.9893 5.1258 39 1 -1.5947 -3.8644 -0.8898 40 1 -0.3925 -1.7429 -1.0524 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020026258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:18 Heat of formation + Delta-G solvation = -51.777370 kcal Electronic energy + Delta-G solvation = -24792.401540 eV Core-core repulsion = 20923.800306 eV Total energy + Delta-G solvation = -3868.601233 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.82185 -39.82242 -39.11914 -37.57143 -36.97701 -34.54570 -33.04678 -31.69731 -31.08419 -29.76851 -29.45769 -28.09525 -25.03517 -24.63798 -23.15663 -21.74701 -21.26879 -20.86312 -19.83331 -18.72934 -17.62753 -17.36745 -16.93740 -16.57131 -16.34870 -16.06708 -15.35642 -15.18575 -14.80051 -14.67823 -14.36697 -14.11006 -13.93987 -13.79113 -13.22496 -13.14371 -12.83837 -12.66043 -12.64989 -12.19080 -11.77804 -11.45035 -11.40097 -11.29950 -11.19800 -11.03028 -10.77641 -10.16297 -10.09508 -9.57017 -9.54481 -9.53352 -9.21915 -8.97513 -8.63955 -7.61988 -6.95567 -6.67598 -4.40401 0.32023 0.95586 2.09705 2.36932 2.47236 2.91613 3.02849 3.06959 3.10587 3.24642 3.41596 3.71899 3.92063 3.94130 4.31183 4.37233 4.60998 4.64127 4.79385 4.81245 4.84508 4.90247 5.09224 5.13344 5.58311 5.58664 5.76215 5.87014 5.94470 6.11342 6.22116 6.36438 6.63161 6.79917 6.94817 7.00073 7.07790 7.11810 7.22792 7.56889 7.63768 7.77547 7.99550 8.13337 8.24755 8.51534 8.60921 8.86848 8.92450 10.23446 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.043516 B = 0.001801 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.291853 B =15543.131192 C =15817.913859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.101 3.899 10 C -0.205 4.205 11 C -0.084 4.084 12 C -0.002 4.002 13 N -0.644 5.644 14 C 0.499 3.501 15 O -0.506 6.506 16 C 0.040 3.960 17 O -0.280 6.280 18 C 0.172 3.828 19 C -0.229 4.229 20 C -0.015 4.015 21 C -0.243 4.243 22 C 0.387 3.613 23 O -0.470 6.470 24 C -0.026 4.026 25 C -0.165 4.165 26 C -0.117 4.117 27 C -0.142 4.142 28 H 0.278 0.722 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.397 0.603 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.103 0.897 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.092 0.908 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.122 -19.030 4.172 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.099 3.901 10 C -0.225 4.225 11 C -0.104 4.104 12 C -0.093 4.093 13 N -0.289 5.289 14 C 0.283 3.717 15 O -0.381 6.381 16 C -0.039 4.039 17 O -0.190 6.190 18 C 0.125 3.875 19 C -0.248 4.248 20 C -0.033 4.033 21 C -0.244 4.244 22 C 0.247 3.753 23 O -0.345 6.345 24 C -0.044 4.044 25 C -0.184 4.184 26 C -0.138 4.138 27 C -0.162 4.162 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.231 0.769 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.119 0.881 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.110 0.890 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.066 -18.749 4.534 20.543 hybrid contribution -0.085 0.754 -0.436 0.875 sum -7.152 -17.995 4.098 19.793 Atomic orbital electron populations 1.69752 1.07321 1.28829 1.37828 1.25897 0.94961 1.01252 0.92490 0.86177 0.80260 0.80370 0.79080 1.19482 1.20263 1.18677 1.19520 0.94808 0.90204 1.44465 0.90510 1.17750 0.92277 0.92022 0.88091 1.20813 1.01297 0.94893 1.05534 1.20407 0.92731 0.97914 0.99325 1.17212 0.94285 0.85540 1.12297 1.42763 1.49126 1.21445 1.15579 1.19865 0.84003 0.84715 0.83109 1.90751 1.37888 1.69878 1.39578 1.22620 1.00953 0.94880 0.85404 1.86162 1.61998 1.35371 1.35510 1.19528 0.89323 0.84998 0.93695 1.21195 1.02181 1.00110 1.01306 1.21085 0.94836 0.92211 0.95183 1.20823 1.04964 1.01293 0.97316 1.23899 0.77692 0.83248 0.90497 1.90531 1.30122 1.63424 1.50398 1.21072 0.91917 0.93314 0.98095 1.20351 1.04675 0.97268 0.96109 1.20300 0.98346 0.93042 1.02073 1.21197 0.97320 0.95536 1.02139 0.91058 0.88472 0.87450 0.76927 0.88874 0.88734 0.84657 0.84709 0.88085 0.84235 0.84131 0.88978 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.73 10.60 55.55 0.59 -20.14 16 2 C 0.07 1.73 5.42 -17.34 -0.09 1.63 16 3 Si 0.92 18.72 29.56 -169.99 -5.03 13.69 16 4 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.18 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -12.06 9.02 -37.85 -0.34 -12.40 16 8 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 9 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 10 C -0.21 -5.12 9.74 -39.26 -0.38 -5.50 16 11 C -0.08 -1.97 8.61 -39.79 -0.34 -2.31 16 12 C 0.00 -0.03 6.31 -83.57 -0.53 -0.56 16 13 N -0.64 -10.39 5.30 -9.74 -0.05 -10.44 16 14 C 0.50 8.16 7.74 -10.99 -0.09 8.08 16 15 O -0.51 -10.84 13.92 -14.36 -0.20 -11.04 16 16 C 0.04 0.44 5.21 36.00 0.19 0.63 16 17 O -0.28 -3.67 9.65 -38.59 -0.37 -4.04 16 18 C 0.17 1.82 6.70 -38.96 -0.26 1.56 16 19 C -0.23 -2.02 8.99 -39.68 -0.36 -2.38 16 20 C -0.01 -0.13 9.57 -39.31 -0.38 -0.50 16 21 C -0.24 -1.90 5.87 -105.06 -0.62 -2.52 16 22 C 0.39 2.75 11.44 34.22 0.39 3.14 16 23 O -0.47 -5.21 17.16 5.54 0.10 -5.12 16 24 C -0.03 -0.17 9.77 -39.31 -0.38 -0.56 16 25 C -0.17 -1.49 9.95 -39.68 -0.39 -1.89 16 26 C -0.12 -2.57 9.90 -39.79 -0.39 -2.97 16 27 C -0.14 -3.55 8.62 -39.26 -0.34 -3.89 16 28 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 29 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 30 H 0.11 2.49 6.22 -52.48 -0.33 2.17 16 31 H 0.40 4.63 8.82 -40.82 -0.36 4.27 16 32 H 0.09 0.74 7.66 -51.93 -0.40 0.34 16 33 H 0.09 0.79 7.64 -51.93 -0.40 0.39 16 34 H 0.14 0.92 6.27 -52.49 -0.33 0.59 16 35 H 0.14 1.09 7.64 -52.49 -0.40 0.69 16 36 H 0.10 0.31 8.06 -52.49 -0.42 -0.11 16 37 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.13 3.43 6.14 -52.48 -0.32 3.10 16 LS Contribution 352.73 15.07 5.32 5.32 Total: -1.00 -33.37 352.73 -8.75 -42.12 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -4.19 Total: 8.02 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -4.91 Total: -18.37 kcal Atomic # 7 Polarization: -31.11 SS G_CDS: 0.54 Total: -30.58 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.48 Total: -20.20 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.37 -8.75 -42.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020026258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.659 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds