Wall clock time and date at job start Tue Mar 31 2020 14:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86798 * 120.00078 * 2 1 4 4 H 1.48499 * 109.47434 * 269.99640 * 3 2 1 5 5 H 1.48497 * 109.47113 * 30.00162 * 3 2 1 6 6 H 1.48504 * 109.47003 * 149.99729 * 3 2 1 7 7 C 1.39909 * 119.99807 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00003 * 175.56190 * 7 2 1 9 9 C 1.41146 * 120.00076 * 355.56780 * 7 2 1 10 10 C 1.40870 * 120.16497 * 214.78054 * 9 7 2 11 11 C 1.36370 * 119.83449 * 180.02562 * 10 9 7 12 12 C 1.39490 * 120.16565 * 0.02562 * 11 10 9 13 13 N 1.39238 * 119.83143 * 179.97438 * 12 11 10 14 14 C 1.34775 * 120.00135 * 35.29313 * 13 12 11 15 15 O 1.21283 * 120.00037 * 355.69827 * 14 13 12 16 16 C 1.50695 * 120.00404 * 175.70725 * 14 13 12 17 17 O 1.42902 * 109.47622 * 179.97438 * 16 14 13 18 18 C 1.35661 * 117.00128 * 179.97438 * 17 16 14 19 19 C 1.39083 * 119.88548 * 359.72389 * 18 17 16 20 20 C 1.37116 * 120.11613 * 179.71802 * 19 18 17 21 21 C 1.40047 * 119.87783 * 0.57973 * 20 19 18 22 22 C 1.46860 * 120.11138 * 179.67249 * 21 20 19 23 23 O 1.21295 * 119.99663 * 0.02562 * 22 21 20 24 24 C 1.40037 * 119.77487 * 359.69705 * 21 20 19 25 25 C 1.37118 * 119.88309 * 0.02562 * 24 21 20 26 26 C 1.39482 * 120.32975 * 0.25256 * 12 11 10 27 27 C 1.36367 * 120.16979 * 359.48538 * 26 12 11 28 28 H 0.96999 * 120.00213 * 0.02562 * 1 2 3 29 29 H 1.08012 * 120.08535 * 359.97438 * 10 9 7 30 30 H 1.08004 * 119.92172 * 179.97438 * 11 10 9 31 31 H 0.96995 * 120.00208 * 215.28157 * 13 12 11 32 32 H 1.09000 * 109.47569 * 59.99358 * 16 14 13 33 33 H 1.09004 * 109.47022 * 299.99642 * 16 14 13 34 34 H 1.07998 * 119.93809 * 0.02562 * 19 18 17 35 35 H 1.07992 * 120.06303 * 180.27198 * 20 19 18 36 36 H 1.07997 * 120.00049 * 180.02562 * 22 21 20 37 37 H 1.08002 * 120.05592 * 179.97438 * 24 21 20 38 38 H 1.07995 * 119.94097 * 180.02562 * 25 24 21 39 39 H 1.07999 * 119.90649 * 179.74741 * 26 12 11 40 40 H 1.08004 * 120.08563 * 180.25856 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4903 2.0464 -1.4000 5 1 1.4402 2.6526 0.7001 6 1 3.5403 1.4401 0.7001 7 6 2.0082 -1.2117 0.0005 8 1 3.0857 -1.2131 -0.0718 9 6 1.3056 -2.4321 0.0956 10 6 1.8648 -3.5180 0.7974 11 6 1.1803 -4.6943 0.8846 12 6 -0.0703 -4.8240 0.2804 13 7 -0.7628 -6.0283 0.3732 14 6 -0.6812 -6.7677 1.4971 15 8 0.0559 -6.4241 2.3969 16 6 -1.5057 -8.0214 1.6359 17 8 -1.2462 -8.6244 2.9052 18 6 -1.9138 -9.7702 3.1908 19 6 -2.8074 -10.3005 2.2663 20 6 -3.4805 -11.4615 2.5477 21 6 -3.2758 -12.1069 3.7736 22 6 -3.9993 -13.3468 4.0833 23 8 -4.7754 -13.8137 3.2765 24 6 -2.3792 -11.5657 4.7033 25 6 -1.7070 -10.4073 4.4097 26 6 -0.6278 -3.7551 -0.4212 27 6 0.0424 -2.5710 -0.5123 28 1 -0.4850 0.8400 -0.0004 29 1 2.8336 -3.4195 1.2647 30 1 1.6079 -5.5279 1.4220 31 1 -1.3041 -6.3352 -0.3708 32 1 -1.2418 -8.7197 0.8416 33 1 -2.5639 -7.7704 1.5621 34 1 -2.9678 -9.7995 1.3231 35 1 -4.1708 -11.8748 1.8275 36 1 -3.8404 -13.8428 5.0294 37 1 -2.2183 -12.0595 5.6503 38 1 -1.0151 -9.9893 5.1258 39 1 -1.5947 -3.8644 -0.8898 40 1 -0.3925 -1.7429 -1.0524 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020026258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:17 Heat of formation + Delta-G solvation = -71.821831 kcal Electronic energy + Delta-G solvation = -24793.270733 eV Core-core repulsion = 20923.800306 eV Total energy + Delta-G solvation = -3869.470426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.71446 -40.97730 -39.97253 -39.04095 -37.95303 -36.20299 -34.78415 -32.34022 -31.86355 -31.51113 -31.01991 -29.36126 -26.65587 -25.36429 -24.01939 -23.32504 -22.60658 -21.85966 -21.29477 -19.51541 -19.27976 -18.75063 -17.73519 -17.70035 -17.48779 -17.01473 -16.91937 -16.11132 -15.92472 -15.62401 -15.52211 -15.22045 -15.05962 -14.83093 -14.51734 -14.38892 -14.04123 -13.91911 -13.64407 -13.49649 -13.46787 -13.25996 -12.87959 -12.79546 -12.49734 -12.12341 -11.94705 -11.78169 -11.41744 -11.24091 -10.86149 -10.75137 -10.64441 -10.13562 -9.49120 -9.33418 -8.77527 -8.52506 -6.35325 -0.29756 0.35621 0.73789 1.11568 1.39300 1.41378 1.47250 1.51860 1.52713 1.71109 2.23286 2.64537 2.78991 2.81412 3.44071 3.51358 3.65780 3.76946 3.83583 3.98487 4.05554 4.23880 4.32607 4.38187 4.49889 4.56643 4.58980 4.91108 4.99278 5.09905 5.12092 5.16368 5.24064 5.30189 5.35140 5.39861 5.63051 5.67510 5.86965 5.98374 6.10476 6.22805 6.36933 6.55742 6.61863 6.66610 6.94873 6.97094 7.28042 8.40241 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.043516 B = 0.001801 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.291853 B =15543.131192 C =15817.913859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.028 3.972 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.498 4.498 8 H 0.072 0.928 9 C 0.067 3.933 10 C -0.222 4.222 11 C -0.098 4.098 12 C 0.018 3.982 13 N -0.634 5.634 14 C 0.497 3.503 15 O -0.562 6.562 16 C 0.050 3.950 17 O -0.313 6.313 18 C 0.149 3.851 19 C -0.228 4.228 20 C -0.030 4.030 21 C -0.250 4.250 22 C 0.395 3.605 23 O -0.515 6.515 24 C -0.011 4.011 25 C -0.182 4.182 26 C -0.114 4.114 27 C -0.160 4.160 28 H 0.285 0.715 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.423 0.577 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.155 0.845 35 H 0.136 0.864 36 H 0.153 0.847 37 H 0.179 0.821 38 H 0.140 0.860 39 H 0.130 0.870 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.629 -20.833 4.441 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.528 4.528 8 H 0.090 0.910 9 C 0.065 3.935 10 C -0.242 4.242 11 C -0.118 4.118 12 C -0.075 4.075 13 N -0.281 5.281 14 C 0.285 3.715 15 O -0.440 6.440 16 C -0.028 4.028 17 O -0.225 6.225 18 C 0.102 3.898 19 C -0.247 4.247 20 C -0.048 4.048 21 C -0.251 4.251 22 C 0.258 3.742 23 O -0.391 6.391 24 C -0.029 4.029 25 C -0.200 4.200 26 C -0.134 4.134 27 C -0.180 4.180 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.262 0.738 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.173 0.827 35 H 0.154 0.846 36 H 0.169 0.831 37 H 0.196 0.804 38 H 0.158 0.842 39 H 0.148 0.852 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.605 -20.601 4.777 22.831 hybrid contribution 0.310 1.082 -0.445 1.210 sum -8.295 -19.519 4.333 21.647 Atomic orbital electron populations 1.69811 1.08537 1.30029 1.38368 1.26730 0.95829 1.04279 0.91553 0.85108 0.78662 0.75824 0.79512 1.18328 1.19393 1.18770 1.19734 0.94870 0.91370 1.46841 0.90954 1.18063 0.93469 0.92649 0.89314 1.20925 1.01649 0.95553 1.06053 1.20529 0.93890 0.97411 0.99943 1.17257 0.93416 0.87253 1.09588 1.42634 1.48765 1.19756 1.16988 1.20840 0.83186 0.85693 0.81829 1.90733 1.40336 1.71510 1.41440 1.22629 1.01275 0.92707 0.86173 1.86100 1.63292 1.36716 1.36424 1.19765 0.90356 0.84783 0.94849 1.21352 1.01474 1.00095 1.01737 1.21278 0.95097 0.92487 0.95919 1.21151 1.05019 1.01709 0.97224 1.24559 0.75888 0.82403 0.91356 1.90532 1.32089 1.64411 1.52111 1.21419 0.90192 0.92139 0.99149 1.20616 1.05290 0.98177 0.95965 1.20573 0.99401 0.91892 1.01547 1.21192 0.97434 0.96573 1.02771 0.90407 0.88723 0.87562 0.73845 0.85111 0.85402 0.82705 0.84634 0.83128 0.80384 0.84197 0.85236 0.86202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.92 10.60 21.82 0.23 -43.69 16 2 C 0.03 1.44 5.42 85.24 0.46 1.90 16 3 Si 0.99 38.93 29.56 68.60 2.03 40.96 16 4 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 5 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 6 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 7 C -0.50 -27.27 9.02 23.39 0.21 -27.06 16 8 H 0.07 3.84 7.85 -2.91 -0.02 3.82 16 9 C 0.07 3.70 5.55 -21.28 -0.12 3.58 16 10 C -0.22 -11.55 9.74 22.48 0.22 -11.33 16 11 C -0.10 -4.68 8.61 22.14 0.19 -4.49 16 12 C 0.02 0.76 6.31 38.57 0.24 1.00 16 13 N -0.63 -19.02 5.30 -303.11 -1.61 -20.63 16 14 C 0.50 15.48 7.74 87.66 0.68 16.16 16 15 O -0.56 -24.16 13.92 16.00 0.22 -23.94 16 16 C 0.05 0.95 5.21 71.23 0.37 1.33 16 17 O -0.31 -7.78 9.65 -70.73 -0.68 -8.46 16 18 C 0.15 2.89 6.70 22.67 0.15 3.05 16 19 C -0.23 -3.49 8.99 22.21 0.20 -3.29 16 20 C -0.03 -0.45 9.57 22.44 0.21 -0.24 16 21 C -0.25 -3.26 5.87 -20.15 -0.12 -3.38 16 22 C 0.40 4.45 11.44 70.08 0.80 5.25 16 23 O -0.51 -10.55 17.16 -3.08 -0.05 -10.60 16 24 C -0.01 -0.12 9.77 22.44 0.22 0.10 16 25 C -0.18 -2.98 9.95 22.21 0.22 -2.76 16 26 C -0.11 -4.91 9.90 22.13 0.22 -4.69 16 27 C -0.16 -8.17 8.62 22.48 0.19 -7.98 16 28 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 29 H 0.09 4.77 8.06 -2.90 -0.02 4.75 16 30 H 0.11 5.07 6.22 -2.91 -0.02 5.06 16 31 H 0.42 8.31 8.82 -92.71 -0.82 7.49 16 32 H 0.13 1.54 7.66 -2.39 -0.02 1.52 16 33 H 0.13 1.62 7.64 -2.38 -0.02 1.61 16 34 H 0.16 1.57 6.27 -2.91 -0.02 1.56 16 35 H 0.14 2.01 7.64 -2.91 -0.02 1.99 16 36 H 0.15 0.21 8.06 -2.91 -0.02 0.19 16 37 H 0.18 0.38 8.06 -2.91 -0.02 0.36 16 38 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 39 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 40 H 0.12 6.39 6.14 -2.91 -0.02 6.37 16 Total: -1.00 -77.82 352.73 4.78 -73.04 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.28 Total: 26.16 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 4.36 Total: -32.84 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: -1.38 Total: -64.32 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -0.51 Total: -43.00 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -77.82 4.78 -73.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020026258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.217 kcal (2) G-P(sol) polarization free energy of solvation -77.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds