Wall clock time and date at job start Tue Mar 31 2020 14:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31442 * 1 3 3 Si 1.86800 * 120.00343 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72248 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72371 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72181 * 3 2 1 7 7 C 1.38759 * 119.99703 * 179.72080 * 2 1 3 8 8 H 1.07999 * 119.99938 * 180.27489 * 7 2 1 9 9 O 1.34914 * 120.00087 * 0.27729 * 7 2 1 10 10 C 1.34313 * 117.00017 * 179.97438 * 9 7 2 11 11 O 1.21210 * 120.00246 * 0.02562 * 10 9 7 12 12 C 1.50706 * 120.00214 * 179.97438 * 10 9 7 13 13 H 1.08997 * 110.85256 * 62.33801 * 12 10 9 14 14 C 1.54632 * 110.96968 * 298.55222 * 12 10 9 15 15 C 1.51277 * 104.19678 * 217.08255 * 14 12 10 16 16 O 1.21282 * 124.94170 * 196.22060 * 15 14 12 17 17 N 1.34423 * 110.11434 * 16.25045 * 15 14 12 18 18 C 1.39617 * 124.34861 * 180.38782 * 17 15 14 19 19 C 1.37818 * 120.29711 * 89.70358 * 18 17 15 20 20 C 1.39160 * 120.75491 * 179.77041 * 19 18 17 21 21 C 1.36169 * 121.08043 * 0.48072 * 20 19 18 22 22 C 1.40511 * 119.94860 * 359.77352 * 21 20 19 23 23 C 1.40578 * 121.19958 * 179.97438 * 22 21 20 24 24 C 1.36107 * 119.66023 * 180.02562 * 23 22 21 25 25 C 1.39345 * 120.97449 * 359.95918 * 24 23 22 26 26 C 1.36155 * 120.96438 * 359.97438 * 25 24 23 27 27 C 1.40366 * 119.67022 * 0.02710 * 26 25 24 28 28 C 1.46760 * 111.30047 * 0.40821 * 17 15 14 29 29 H 0.97000 * 119.99816 * 179.97438 * 1 2 3 30 30 H 1.09001 * 110.48581 * 335.76073 * 14 12 10 31 31 H 1.09000 * 110.48364 * 98.26890 * 14 12 10 32 32 H 1.08010 * 119.62459 * 359.97073 * 19 18 17 33 33 H 1.07995 * 119.46388 * 180.25491 * 20 19 18 34 34 H 1.07996 * 120.02698 * 179.79635 * 21 20 19 35 35 H 1.07998 * 120.16845 * 0.07641 * 23 22 21 36 36 H 1.08000 * 119.51059 * 179.97438 * 24 23 22 37 37 H 1.07997 * 119.51623 * 180.02562 * 25 24 23 38 38 H 1.08001 * 120.16236 * 180.02562 * 26 25 24 39 39 H 1.08999 * 110.24939 * 223.98021 * 28 17 15 40 40 H 1.09007 * 110.24781 * 101.98466 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.7085 1.3463 0.0068 5 1 1.8948 2.3935 -1.2159 6 1 1.8847 2.3993 1.2091 7 6 2.0082 -1.2017 0.0059 8 1 3.0881 -1.2017 0.0103 9 8 1.3335 -2.3701 0.0059 10 6 2.0650 -3.4965 0.0112 11 8 3.2755 -3.4332 0.0161 12 6 1.3808 -4.8393 0.0122 13 1 0.7865 -4.9726 -0.8917 14 6 0.5104 -5.0160 1.2779 15 6 0.6757 -6.4751 1.6413 16 8 -0.0474 -7.0890 2.3970 17 7 1.7411 -6.9921 1.0051 18 6 2.1605 -8.3187 1.1210 19 6 1.6707 -9.2801 0.2636 20 6 2.0857 -10.6043 0.3675 21 6 2.9774 -10.9887 1.3221 22 6 3.4969 -10.0402 2.2193 23 6 4.4184 -10.4082 3.2152 24 6 4.9012 -9.4638 4.0681 25 6 4.4964 -8.1341 3.9693 26 6 3.6066 -7.7416 3.0164 27 6 3.0871 -8.6877 2.1190 28 6 2.4071 -5.9826 0.1736 29 1 -0.4850 -0.8401 -0.0004 30 1 0.8748 -4.3786 2.0835 31 1 -0.5333 -4.7915 1.0575 32 1 0.9589 -9.0021 -0.4997 33 1 1.6915 -11.3399 -0.3180 34 1 3.2854 -12.0216 1.3894 35 1 4.7421 -11.4348 3.3025 36 1 5.6087 -9.7492 4.8326 37 1 4.8948 -7.4040 4.6582 38 1 3.3021 -6.7074 2.9512 39 1 2.6599 -6.4028 -0.7998 40 1 3.3048 -5.6161 0.6716 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026740785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:33 Heat of formation + Delta-G solvation = -64.243459 kcal Electronic energy + Delta-G solvation = -26610.965913 eV Core-core repulsion = 22741.824109 eV Total energy + Delta-G solvation = -3869.141804 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.29640 -39.99974 -38.99307 -36.79921 -36.38329 -35.34404 -33.70494 -32.21504 -31.15204 -30.51694 -28.72192 -27.67681 -25.37189 -23.91071 -23.18221 -23.14213 -22.21994 -20.16555 -19.59269 -18.15943 -17.84196 -17.63744 -17.20786 -16.53825 -16.09972 -15.72238 -15.32109 -14.93826 -14.76375 -14.43977 -14.23482 -13.87506 -13.80355 -13.73986 -13.52947 -13.42751 -13.08843 -12.82134 -12.71265 -12.27124 -11.65616 -11.49583 -11.38740 -11.27602 -11.20622 -11.09432 -10.89815 -10.54076 -10.31020 -10.21458 -9.87134 -9.83325 -9.22806 -8.97141 -8.82055 -8.61693 -8.02190 -6.83635 -4.21964 0.26541 0.81900 1.79492 2.50960 2.75658 2.78078 3.06528 3.24764 3.39864 3.44364 3.76367 3.90487 4.28484 4.36657 4.46740 4.61699 4.63526 4.67101 4.81195 4.92229 4.93301 5.08111 5.12323 5.17366 5.20063 5.22041 5.34661 5.52792 5.63849 5.74381 5.81725 5.87498 5.93282 5.99816 6.02731 6.15416 6.33499 6.37954 6.42460 6.44387 6.71547 6.81879 6.95562 7.51683 8.12330 8.30461 8.36072 8.93586 9.59396 10.60966 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.020816 B = 0.002962 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.795830 B = 9449.720711 C =10022.817547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.015 3.985 3 Si 1.102 2.898 4 H -0.282 1.282 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.464 4.464 8 H 0.090 0.910 9 O -0.228 6.228 10 C 0.407 3.593 11 O -0.545 6.545 12 C -0.083 4.083 13 H 0.117 0.883 14 C -0.139 4.139 15 C 0.526 3.474 16 O -0.520 6.520 17 N -0.582 5.582 18 C 0.162 3.838 19 C -0.108 4.108 20 C -0.108 4.108 21 C -0.103 4.103 22 C -0.046 4.046 23 C -0.110 4.110 24 C -0.113 4.113 25 C -0.116 4.116 26 C -0.094 4.094 27 C -0.046 4.046 28 C 0.121 3.879 29 H 0.282 0.718 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.087 0.913 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.008 -20.114 2.494 21.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.191 4.191 3 Si 0.927 3.073 4 H -0.207 1.207 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.540 4.540 8 H 0.108 0.892 9 O -0.136 6.136 10 C 0.253 3.747 11 O -0.442 6.442 12 C -0.103 4.103 13 H 0.135 0.865 14 C -0.179 4.179 15 C 0.315 3.685 16 O -0.394 6.394 17 N -0.314 5.314 18 C 0.073 3.927 19 C -0.127 4.127 20 C -0.127 4.127 21 C -0.121 4.121 22 C -0.047 4.047 23 C -0.127 4.127 24 C -0.131 4.131 25 C -0.134 4.134 26 C -0.112 4.112 27 C -0.048 4.048 28 C 0.000 4.000 29 H 0.092 0.908 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.106 0.894 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.708 -18.763 2.908 19.826 hybrid contribution 0.240 -1.650 -0.116 1.672 sum 5.948 -20.413 2.791 21.444 Atomic orbital electron populations 1.70507 1.06623 1.31688 1.42335 1.26632 0.96738 1.01199 0.94507 0.82993 0.74174 0.72511 0.77669 1.20703 1.20463 1.20456 1.22215 0.93866 0.80979 1.56939 0.89230 1.83580 1.40357 1.14055 1.75593 1.22282 0.86378 0.86165 0.79898 1.90582 1.15271 1.87559 1.50833 1.21606 0.96929 0.91216 1.00536 0.86463 1.22311 1.03474 0.93425 0.98675 1.21081 0.79125 0.89348 0.78927 1.90728 1.46596 1.66566 1.35531 1.45575 1.29850 1.08078 1.47873 1.17285 0.96356 0.83304 0.95791 1.21319 0.99611 0.92738 0.99013 1.20699 0.97764 0.95429 0.98798 1.21048 0.97288 0.98931 0.94863 1.17976 0.97732 0.92187 0.96772 1.20998 0.97020 0.99684 0.95045 1.20880 0.99851 0.93168 0.99158 1.20903 0.97652 0.96312 0.98512 1.21005 0.96464 0.99289 0.94491 1.18229 0.97081 0.93417 0.96054 1.22123 0.95767 0.86204 0.95937 0.90790 0.86805 0.86523 0.85431 0.85358 0.85267 0.85394 0.85845 0.85737 0.85730 0.89422 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.24 13.69 55.48 0.76 -24.48 16 2 C 0.02 0.42 5.49 -17.53 -0.10 0.32 16 3 Si 1.10 23.83 29.92 -169.99 -5.09 18.74 16 4 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.46 -13.15 9.65 30.92 0.30 -12.85 16 8 H 0.09 2.61 6.86 -52.49 -0.36 2.25 16 9 O -0.23 -6.00 9.13 -20.69 -0.19 -6.19 16 10 C 0.41 9.07 7.13 36.01 0.26 9.33 16 11 O -0.55 -13.48 14.81 -19.05 -0.28 -13.76 16 12 C -0.08 -1.34 3.66 -90.14 -0.33 -1.67 16 13 H 0.12 1.63 8.14 -51.93 -0.42 1.21 16 14 C -0.14 -2.16 6.40 -26.74 -0.17 -2.33 16 15 C 0.53 8.62 7.98 -10.86 -0.09 8.53 16 16 O -0.52 -10.10 17.71 5.56 0.10 -10.01 16 17 N -0.58 -8.53 2.07 -112.00 -0.23 -8.76 16 18 C 0.16 2.29 5.38 -83.38 -0.45 1.84 16 19 C -0.11 -1.28 9.92 -39.39 -0.39 -1.67 16 20 C -0.11 -1.05 9.94 -39.98 -0.40 -1.45 16 21 C -0.10 -1.00 9.75 -39.47 -0.38 -1.38 16 22 C -0.05 -0.54 5.74 -106.85 -0.61 -1.16 16 23 C -0.11 -1.08 9.77 -39.47 -0.39 -1.46 16 24 C -0.11 -1.11 9.95 -39.94 -0.40 -1.50 16 25 C -0.12 -1.33 9.95 -39.92 -0.40 -1.73 16 26 C -0.09 -1.30 9.54 -39.53 -0.38 -1.67 16 27 C -0.05 -0.64 5.75 -106.70 -0.61 -1.26 16 28 C 0.12 1.75 6.59 -3.13 -0.02 1.73 16 29 H 0.28 8.12 7.97 -40.82 -0.33 7.80 16 30 H 0.11 1.87 7.89 -51.93 -0.41 1.46 16 31 H 0.12 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 38 H 0.12 1.81 7.54 -52.49 -0.40 1.41 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.10 1.52 7.06 -51.93 -0.37 1.16 16 LS Contribution 351.32 15.07 5.29 5.29 Total: -1.00 -34.42 351.32 -8.65 -43.07 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -4.46 Total: 4.47 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: -4.55 Total: -8.39 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: 0.53 Total: -33.24 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.37 Total: -29.95 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -5.09 Total: 18.74 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.42 -8.65 -43.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026740785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.169 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds