Wall clock time and date at job start Tue Mar 31 2020 14:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30615 * 1 3 3 Si 1.86801 * 119.99764 * 2 1 4 4 H 1.48493 * 109.47173 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46636 * 120.00414 * 3 2 1 6 6 H 1.48494 * 109.47212 * 240.00328 * 3 2 1 7 7 C 1.40300 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99555 * 159.68305 * 7 2 1 9 9 C 1.40861 * 119.99625 * 339.67941 * 7 2 1 10 10 C 1.40703 * 120.33435 * 325.73972 * 9 7 2 11 11 C 1.37598 * 119.88779 * 179.97438 * 10 9 7 12 12 C 1.38842 * 120.58249 * 0.02562 * 11 10 9 13 13 C 1.38205 * 120.68093 * 0.02562 * 12 11 10 14 14 C 1.39296 * 120.08627 * 359.73704 * 13 12 11 15 15 C 1.47288 * 120.28603 * 180.27692 * 14 13 12 16 16 O 1.21526 * 119.99628 * 174.84553 * 15 14 13 17 17 O 1.34804 * 120.00213 * 354.83939 * 15 14 13 18 18 C 1.45201 * 116.99925 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.46944 * 180.02562 * 18 17 15 20 20 C 1.38388 * 119.92712 * 269.72430 * 19 18 17 21 21 C 1.38343 * 120.28979 * 179.76838 * 20 19 18 22 22 C 1.37975 * 120.14466 * 0.50360 * 21 20 19 23 23 C 1.39554 * 119.85463 * 359.75122 * 22 21 20 24 24 C 1.47848 * 120.14304 * 179.97438 * 23 22 21 25 25 N 1.34774 * 120.00315 * 0.02562 * 24 23 22 26 26 O 1.21557 * 119.99781 * 180.02562 * 24 23 22 27 27 C 1.37932 * 119.93010 * 90.00014 * 19 18 17 28 28 H 0.97001 * 119.99911 * 175.28865 * 1 2 3 29 29 H 1.07997 * 120.05864 * 359.95913 * 10 9 7 30 30 H 1.07994 * 119.70936 * 179.97438 * 11 10 9 31 31 H 1.07997 * 119.66024 * 179.97438 * 12 11 10 32 32 H 1.08000 * 119.95667 * 180.02562 * 13 12 11 33 33 H 1.08999 * 109.46985 * 299.99610 * 18 17 15 34 34 H 1.09000 * 109.47066 * 60.00012 * 18 17 15 35 35 H 1.07998 * 119.85112 * 359.97438 * 20 19 18 36 36 H 1.08003 * 119.92072 * 180.25456 * 21 20 19 37 37 H 1.08002 * 120.07175 * 179.76594 * 22 21 20 38 38 H 0.97000 * 119.99787 * 359.97438 * 25 24 23 39 39 H 0.96998 * 120.00331 * 179.97438 * 25 24 23 40 40 H 1.08000 * 120.07201 * 359.95246 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 1.2751 2.7464 0.0006 5 1 3.0939 1.6963 1.2125 6 1 3.0937 1.6965 -1.2125 7 6 2.0077 -1.2150 -0.0005 8 1 3.0372 -1.2438 -0.3253 9 6 1.3691 -2.3971 0.4226 10 6 0.4104 -2.3576 1.4517 11 6 -0.2082 -3.5178 1.8574 12 6 0.1052 -4.7315 1.2603 13 6 1.0440 -4.7979 0.2482 14 6 1.6837 -3.6399 -0.1879 15 6 2.6804 -3.7047 -1.2704 16 8 3.1664 -2.6816 -1.7109 17 8 3.0537 -4.8988 -1.7724 18 6 4.0407 -4.8868 -2.8373 19 6 4.3311 -6.3011 -3.2690 20 6 5.3465 -7.0150 -2.6571 21 6 5.6163 -8.3155 -3.0442 22 6 4.8805 -8.9055 -4.0512 23 6 3.8587 -8.1893 -4.6760 24 6 3.0665 -8.8151 -5.7562 25 7 3.3302 -10.0801 -6.1391 26 8 2.1774 -8.1887 -6.2990 27 6 3.5881 -6.8792 -4.2771 28 1 -0.4850 -0.8372 -0.0690 29 1 0.1606 -1.4183 1.9225 30 1 -0.9433 -3.4842 2.6478 31 1 -0.3891 -5.6331 1.5907 32 1 1.2785 -5.7481 -0.2084 33 1 3.6540 -4.3208 -3.6847 34 1 4.9579 -4.4208 -2.4772 35 1 5.9285 -6.5561 -1.8716 36 1 6.4075 -8.8686 -2.5598 37 1 5.0947 -9.9195 -4.3551 38 1 4.0400 -10.5799 -5.7063 39 1 2.8103 -10.4908 -6.8475 40 1 2.7984 -6.3197 -4.7563 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000047705830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:43 Heat of formation + Delta-G solvation = -87.934981 kcal Electronic energy + Delta-G solvation = -25769.761169 eV Core-core repulsion = 21899.592024 eV Total energy + Delta-G solvation = -3870.169145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.39586 -39.47910 -38.46375 -37.43747 -35.42750 -34.19697 -33.97193 -32.09298 -31.28223 -30.16564 -29.45947 -26.62839 -25.28917 -24.39952 -22.84816 -21.94173 -21.08415 -20.46577 -19.86142 -18.38560 -18.02967 -17.06805 -16.71882 -16.28345 -15.87734 -15.75120 -14.99326 -14.96331 -14.70032 -14.63649 -14.17172 -13.96238 -13.93765 -13.54790 -12.93799 -12.83839 -12.63227 -12.37424 -12.08284 -11.93596 -11.66056 -11.28492 -11.20278 -10.98630 -10.76595 -10.42597 -10.33286 -10.24679 -10.03693 -10.01455 -9.77680 -9.24116 -9.20176 -9.13846 -8.84075 -7.87523 -7.69622 -7.28127 -4.59133 0.58092 1.04060 2.07647 2.57924 2.70671 3.15383 3.16669 3.26024 3.35843 3.39591 3.76725 3.88522 3.97253 4.46088 4.48412 4.52883 4.61795 4.86024 5.05130 5.11887 5.33431 5.37703 5.52701 5.65073 5.73900 5.98119 5.99484 6.02890 6.07581 6.18454 6.34288 6.43481 6.44591 6.60647 6.70995 6.90678 6.99254 7.14947 7.28974 7.45533 7.54426 7.70362 7.79230 7.95320 8.03784 8.11979 8.59384 8.71529 8.99054 9.92916 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.002824 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.001219 B = 9913.199575 C =10455.836220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.032 3.968 3 Si 1.071 2.929 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.465 4.465 8 H 0.104 0.896 9 C 0.122 3.878 10 C -0.201 4.201 11 C -0.070 4.070 12 C -0.261 4.261 13 C -0.022 4.022 14 C -0.254 4.254 15 C 0.504 3.496 16 O -0.514 6.514 17 O -0.364 6.364 18 C 0.107 3.893 19 C -0.091 4.091 20 C -0.067 4.067 21 C -0.131 4.131 22 C -0.083 4.083 23 C -0.146 4.146 24 C 0.565 3.435 25 N -0.853 5.853 26 O -0.536 6.536 27 C -0.035 4.035 28 H 0.300 0.700 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.400 0.600 39 H 0.405 0.595 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.069 -16.175 -6.086 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.191 4.191 3 Si 0.893 3.107 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.491 4.491 8 H 0.122 0.878 9 C 0.117 3.883 10 C -0.220 4.220 11 C -0.089 4.089 12 C -0.280 4.280 13 C -0.040 4.040 14 C -0.257 4.257 15 C 0.354 3.646 16 O -0.404 6.404 17 O -0.283 6.283 18 C 0.033 3.967 19 C -0.091 4.091 20 C -0.086 4.086 21 C -0.148 4.148 22 C -0.101 4.101 23 C -0.149 4.149 24 C 0.351 3.649 25 N -0.417 5.417 26 O -0.413 6.413 27 C -0.053 4.053 28 H 0.114 0.886 29 H 0.127 0.873 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.230 0.770 39 H 0.236 0.764 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.433 -13.673 -6.446 17.818 hybrid contribution 0.327 -2.307 -0.169 2.336 sum 9.760 -15.980 -6.615 19.859 Atomic orbital electron populations 1.70387 1.08254 1.34485 1.27517 1.27324 0.95666 1.04760 0.91350 0.83552 0.75606 0.73174 0.78340 1.19763 1.19818 1.19680 1.21195 1.01876 0.92195 1.33828 0.87794 1.17461 0.89849 0.91580 0.89383 1.21197 1.03160 0.97289 1.00346 1.20806 0.97261 0.93146 0.97642 1.20329 1.06293 0.96765 1.04626 1.20910 0.93133 0.96134 0.93868 1.18659 1.07946 0.95723 1.03357 1.21353 0.81240 0.80068 0.81898 1.90744 1.54808 1.34582 1.60288 1.86655 1.56227 1.35704 1.49760 1.21543 0.92492 0.92214 0.90466 1.19658 0.96646 0.96054 0.96710 1.21382 0.95875 0.93963 0.97348 1.21078 1.00568 0.95303 0.97901 1.21265 0.94262 0.99071 0.95529 1.19815 0.99499 0.95935 0.99678 1.18291 0.82808 0.81545 0.82279 1.43735 1.40433 1.15299 1.42242 1.90847 1.31870 1.62734 1.55862 1.21247 0.96712 0.93180 0.94206 0.88618 0.87304 0.88614 0.88583 0.87825 0.90633 0.90623 0.85041 0.85039 0.85632 0.77046 0.76446 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.65 12.60 55.57 0.70 -19.95 16 2 C 0.03 0.81 5.01 -17.29 -0.09 0.72 16 3 Si 1.07 21.93 29.98 -169.99 -5.10 16.83 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.46 -12.54 7.62 -37.81 -0.29 -12.82 16 8 H 0.10 2.89 5.99 -52.49 -0.31 2.58 16 9 C 0.12 3.21 5.16 -106.54 -0.55 2.66 16 10 C -0.20 -4.95 7.90 -38.88 -0.31 -5.25 16 11 C -0.07 -1.53 10.01 -39.59 -0.40 -1.93 16 12 C -0.26 -5.58 10.03 -39.37 -0.39 -5.98 16 13 C -0.02 -0.49 9.60 -39.20 -0.38 -0.87 16 14 C -0.25 -6.36 5.92 -104.39 -0.62 -6.98 16 15 C 0.50 12.11 7.85 34.41 0.27 12.38 16 16 O -0.51 -13.34 13.38 -19.28 -0.26 -13.60 16 17 O -0.36 -7.38 9.47 -40.78 -0.39 -7.77 16 18 C 0.11 1.74 5.60 36.00 0.20 1.94 16 19 C -0.09 -1.22 5.51 -104.68 -0.58 -1.80 16 20 C -0.07 -0.74 9.69 -39.49 -0.38 -1.12 16 21 C -0.13 -1.11 10.03 -39.64 -0.40 -1.51 16 22 C -0.08 -0.68 9.54 -39.19 -0.37 -1.05 16 23 C -0.15 -1.66 5.87 -104.97 -0.62 -2.27 16 24 C 0.56 6.57 8.05 -12.33 -0.10 6.47 16 25 N -0.85 -5.63 8.82 30.53 0.27 -5.36 16 26 O -0.54 -8.63 17.18 5.32 0.09 -8.54 16 27 C -0.03 -0.47 9.24 -39.19 -0.36 -0.83 16 28 H 0.30 8.10 6.62 -40.82 -0.27 7.83 16 29 H 0.11 2.70 6.99 -52.49 -0.37 2.33 16 30 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 32 H 0.10 2.11 7.61 -52.49 -0.40 1.71 16 33 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 34 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 37 H 0.13 0.55 6.41 -52.49 -0.34 0.21 16 38 H 0.40 1.37 6.86 -40.82 -0.28 1.09 16 39 H 0.40 2.16 8.93 -40.82 -0.36 1.80 16 40 H 0.14 2.04 7.65 -52.49 -0.40 1.64 16 LS Contribution 350.85 15.07 5.29 5.29 Total: -1.00 -32.88 350.85 -8.81 -41.69 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -4.06 Total: 9.64 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -5.36 Total: -18.24 kcal Atomic # 7 Polarization: -26.28 SS G_CDS: 0.97 Total: -25.31 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.55 Total: -29.90 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.10 Total: 16.83 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.88 -8.81 -41.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047705830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.247 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds