Wall clock time and date at job start Tue Mar 31 2020 14:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30615 * 1 3 3 Si 1.86801 * 119.99764 * 2 1 4 4 H 1.48493 * 109.47173 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46636 * 120.00414 * 3 2 1 6 6 H 1.48494 * 109.47212 * 240.00328 * 3 2 1 7 7 C 1.40300 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99555 * 159.68305 * 7 2 1 9 9 C 1.40861 * 119.99625 * 339.67941 * 7 2 1 10 10 C 1.40703 * 120.33435 * 325.73972 * 9 7 2 11 11 C 1.37598 * 119.88779 * 179.97438 * 10 9 7 12 12 C 1.38842 * 120.58249 * 0.02562 * 11 10 9 13 13 C 1.38205 * 120.68093 * 0.02562 * 12 11 10 14 14 C 1.39296 * 120.08627 * 359.73704 * 13 12 11 15 15 C 1.47288 * 120.28603 * 180.27692 * 14 13 12 16 16 O 1.21526 * 119.99628 * 174.84553 * 15 14 13 17 17 O 1.34804 * 120.00213 * 354.83939 * 15 14 13 18 18 C 1.45201 * 116.99925 * 180.02562 * 17 15 14 19 19 C 1.50697 * 109.46944 * 180.02562 * 18 17 15 20 20 C 1.38388 * 119.92712 * 269.72430 * 19 18 17 21 21 C 1.38343 * 120.28979 * 179.76838 * 20 19 18 22 22 C 1.37975 * 120.14466 * 0.50360 * 21 20 19 23 23 C 1.39554 * 119.85463 * 359.75122 * 22 21 20 24 24 C 1.47848 * 120.14304 * 179.97438 * 23 22 21 25 25 N 1.34774 * 120.00315 * 0.02562 * 24 23 22 26 26 O 1.21557 * 119.99781 * 180.02562 * 24 23 22 27 27 C 1.37932 * 119.93010 * 90.00014 * 19 18 17 28 28 H 0.97001 * 119.99911 * 175.28865 * 1 2 3 29 29 H 1.07997 * 120.05864 * 359.95913 * 10 9 7 30 30 H 1.07994 * 119.70936 * 179.97438 * 11 10 9 31 31 H 1.07997 * 119.66024 * 179.97438 * 12 11 10 32 32 H 1.08000 * 119.95667 * 180.02562 * 13 12 11 33 33 H 1.08999 * 109.46985 * 299.99610 * 18 17 15 34 34 H 1.09000 * 109.47066 * 60.00012 * 18 17 15 35 35 H 1.07998 * 119.85112 * 359.97438 * 20 19 18 36 36 H 1.08003 * 119.92072 * 180.25456 * 21 20 19 37 37 H 1.08002 * 120.07175 * 179.76594 * 22 21 20 38 38 H 0.97000 * 119.99787 * 359.97438 * 25 24 23 39 39 H 0.96998 * 120.00331 * 179.97438 * 25 24 23 40 40 H 1.08000 * 120.07201 * 359.95246 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 1.2751 2.7464 0.0006 5 1 3.0939 1.6963 1.2125 6 1 3.0937 1.6965 -1.2125 7 6 2.0077 -1.2150 -0.0005 8 1 3.0372 -1.2438 -0.3253 9 6 1.3691 -2.3971 0.4226 10 6 0.4104 -2.3576 1.4517 11 6 -0.2082 -3.5178 1.8574 12 6 0.1052 -4.7315 1.2603 13 6 1.0440 -4.7979 0.2482 14 6 1.6837 -3.6399 -0.1879 15 6 2.6804 -3.7047 -1.2704 16 8 3.1664 -2.6816 -1.7109 17 8 3.0537 -4.8988 -1.7724 18 6 4.0407 -4.8868 -2.8373 19 6 4.3311 -6.3011 -3.2690 20 6 5.3465 -7.0150 -2.6571 21 6 5.6163 -8.3155 -3.0442 22 6 4.8805 -8.9055 -4.0512 23 6 3.8587 -8.1893 -4.6760 24 6 3.0665 -8.8151 -5.7562 25 7 3.3302 -10.0801 -6.1391 26 8 2.1774 -8.1887 -6.2990 27 6 3.5881 -6.8792 -4.2771 28 1 -0.4850 -0.8372 -0.0690 29 1 0.1606 -1.4183 1.9225 30 1 -0.9433 -3.4842 2.6478 31 1 -0.3891 -5.6331 1.5907 32 1 1.2785 -5.7481 -0.2084 33 1 3.6540 -4.3208 -3.6847 34 1 4.9579 -4.4208 -2.4772 35 1 5.9285 -6.5561 -1.8716 36 1 6.4075 -8.8686 -2.5598 37 1 5.0947 -9.9195 -4.3551 38 1 4.0400 -10.5799 -5.7063 39 1 2.8103 -10.4908 -6.8475 40 1 2.7984 -6.3197 -4.7563 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000047705830.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:42 Heat of formation + Delta-G solvation = -108.701923 kcal Electronic energy + Delta-G solvation = -25770.661691 eV Core-core repulsion = 21899.592024 eV Total energy + Delta-G solvation = -3871.069667 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.47026 -41.05026 -39.59531 -39.10009 -37.17831 -35.87240 -35.03334 -33.14009 -32.11633 -31.96677 -31.32249 -27.96958 -27.07416 -25.26704 -24.57647 -23.01681 -22.80436 -21.67392 -21.35958 -19.96166 -19.14064 -18.51474 -17.97757 -17.43950 -17.22868 -17.07506 -16.61479 -16.06960 -15.95117 -15.90827 -15.71506 -15.60312 -15.02365 -14.78251 -14.55772 -14.16512 -14.10768 -13.92086 -13.67637 -13.29322 -12.99731 -12.78947 -12.72608 -12.53176 -12.22129 -12.09481 -11.98041 -11.66803 -11.60284 -11.26872 -11.01833 -10.84506 -10.79920 -10.03982 -10.01412 -9.75401 -9.59434 -9.24295 -6.58788 -0.27226 0.14055 0.19259 0.85533 1.46380 1.60669 1.64829 1.76728 1.89204 2.05291 2.27585 2.44804 2.64126 2.83696 3.43297 3.50856 3.70795 3.79055 4.01537 4.09681 4.09710 4.25313 4.26409 4.34227 4.45538 4.50272 4.71624 4.74214 4.85925 4.88107 5.03033 5.16516 5.27883 5.32258 5.42115 5.45253 5.57777 5.65464 5.75780 5.78904 5.83975 5.89205 6.12309 6.23797 6.36766 6.66146 6.75431 7.13162 7.23485 7.93847 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.016304 B = 0.002824 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.001219 B = 9913.199575 C =10455.836220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.000 4.000 3 Si 1.116 2.884 4 H -0.263 1.263 5 H -0.255 1.255 6 H -0.270 1.270 7 C -0.504 4.504 8 H 0.084 0.916 9 C 0.100 3.900 10 C -0.221 4.221 11 C -0.062 4.062 12 C -0.246 4.246 13 C -0.027 4.027 14 C -0.278 4.278 15 C 0.503 3.497 16 O -0.543 6.543 17 O -0.360 6.360 18 C 0.105 3.895 19 C -0.111 4.111 20 C -0.070 4.070 21 C -0.118 4.118 22 C -0.060 4.060 23 C -0.157 4.157 24 C 0.560 3.440 25 N -0.823 5.823 26 O -0.594 6.594 27 C -0.059 4.059 28 H 0.285 0.715 29 H 0.098 0.902 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.125 0.875 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.144 0.856 36 H 0.175 0.825 37 H 0.176 0.824 38 H 0.419 0.581 39 H 0.414 0.586 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.523 -19.943 -5.212 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.217 4.217 3 Si 0.933 3.067 4 H -0.187 1.187 5 H -0.179 1.179 6 H -0.195 1.195 7 C -0.531 4.531 8 H 0.102 0.898 9 C 0.096 3.904 10 C -0.241 4.241 11 C -0.080 4.080 12 C -0.264 4.264 13 C -0.045 4.045 14 C -0.281 4.281 15 C 0.354 3.646 16 O -0.436 6.436 17 O -0.279 6.279 18 C 0.031 3.969 19 C -0.111 4.111 20 C -0.089 4.089 21 C -0.135 4.135 22 C -0.078 4.078 23 C -0.160 4.160 24 C 0.347 3.653 25 N -0.388 5.388 26 O -0.476 6.476 27 C -0.078 4.078 28 H 0.097 0.903 29 H 0.117 0.883 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.143 0.857 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.161 0.839 36 H 0.192 0.808 37 H 0.193 0.807 38 H 0.253 0.747 39 H 0.246 0.754 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 10.915 -17.538 -5.565 21.394 hybrid contribution -0.079 -1.510 -0.476 1.586 sum 10.835 -19.049 -6.041 22.732 Atomic orbital electron populations 1.70498 1.08664 1.33318 1.30234 1.28587 0.95769 1.07456 0.89896 0.83021 0.74869 0.69783 0.79042 1.18736 1.17932 1.19495 1.21172 1.01485 0.93689 1.36765 0.89816 1.17841 0.90525 0.92169 0.89883 1.21206 1.04062 0.98155 1.00630 1.21233 0.96742 0.92291 0.97736 1.20840 1.04730 0.97996 1.02872 1.21198 0.92995 0.96078 0.94206 1.19041 1.08713 0.96445 1.03874 1.21374 0.80890 0.80603 0.81707 1.90717 1.55828 1.35855 1.61186 1.86609 1.57100 1.33540 1.50648 1.21783 0.91453 0.94912 0.88758 1.19420 0.98768 0.94778 0.98141 1.21630 0.94860 0.95107 0.97260 1.21557 1.00770 0.94061 0.97156 1.21787 0.91667 1.00619 0.93763 1.19898 1.00741 0.95216 1.00191 1.18449 0.82172 0.82619 0.82067 1.43491 1.40248 1.13484 1.41605 1.90825 1.34446 1.64453 1.57859 1.21121 0.96909 0.94670 0.95112 0.90279 0.88346 0.84943 0.84466 0.85677 0.92034 0.89961 0.83868 0.80785 0.80712 0.74731 0.75368 0.87258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -44.22 12.60 21.89 0.28 -43.95 16 2 C 0.00 -0.01 5.01 85.38 0.43 0.42 16 3 Si 1.12 45.70 29.98 68.60 2.06 47.76 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.50 -28.77 7.62 23.41 0.18 -28.59 16 8 H 0.08 4.99 5.99 -2.91 -0.02 4.98 16 9 C 0.10 5.48 5.16 -21.10 -0.11 5.37 16 10 C -0.22 -11.09 7.90 22.72 0.18 -10.91 16 11 C -0.06 -2.60 10.01 22.26 0.22 -2.37 16 12 C -0.25 -9.81 10.03 22.41 0.22 -9.58 16 13 C -0.03 -1.16 9.60 22.52 0.22 -0.95 16 14 C -0.28 -14.31 5.92 -19.71 -0.12 -14.42 16 15 C 0.50 25.34 7.85 70.20 0.55 25.89 16 16 O -0.54 -30.03 13.38 19.75 0.26 -29.77 16 17 O -0.36 -15.16 9.47 -57.15 -0.54 -15.70 16 18 C 0.10 3.60 5.60 71.23 0.40 4.00 16 19 C -0.11 -3.03 5.51 -19.90 -0.11 -3.14 16 20 C -0.07 -1.38 9.69 22.33 0.22 -1.16 16 21 C -0.12 -1.46 10.03 22.23 0.22 -1.23 16 22 C -0.06 -0.72 9.54 22.52 0.21 -0.50 16 23 C -0.16 -3.34 5.87 -20.09 -0.12 -3.46 16 24 C 0.56 12.49 8.05 86.79 0.70 13.19 16 25 N -0.82 -8.43 8.82 -175.60 -1.55 -9.98 16 26 O -0.59 -19.80 17.18 -3.90 -0.07 -19.87 16 27 C -0.06 -1.66 9.24 22.53 0.21 -1.45 16 28 H 0.28 16.19 6.62 -92.71 -0.61 15.58 16 29 H 0.10 5.05 6.99 -2.91 -0.02 5.03 16 30 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 31 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 32 H 0.13 4.89 7.61 -2.91 -0.02 4.86 16 33 H 0.06 2.24 8.08 -2.39 -0.02 2.22 16 34 H 0.08 2.66 8.08 -2.39 -0.02 2.64 16 35 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 36 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 37 H 0.18 0.32 6.41 -2.91 -0.02 0.30 16 38 H 0.42 0.88 6.86 -92.71 -0.64 0.24 16 39 H 0.41 3.34 8.93 -92.71 -0.83 2.51 16 40 H 0.11 3.62 7.65 -2.91 -0.02 3.59 16 Total: -1.00 -78.69 350.85 3.76 -74.93 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: -0.19 Total: 25.49 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 3.51 Total: -28.92 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: -1.27 Total: -53.92 kcal Atomic # 8 Polarization: -65.00 SS G_CDS: -0.34 Total: -65.34 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.06 Total: 47.76 kcal Total: -78.69 3.76 -74.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000047705830.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.768 kcal (2) G-P(sol) polarization free energy of solvation -78.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds