Wall clock time and date at job start Tue Mar 31 2020 14:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31500 * 1 3 3 Si 1.86806 * 119.99831 * 2 1 4 4 H 1.48503 * 109.47029 * 240.00033 * 3 2 1 5 5 H 1.48496 * 109.47313 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46836 * 120.00538 * 3 2 1 7 7 C 1.38714 * 120.00244 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00113 * 180.02562 * 7 2 1 9 9 O 1.34788 * 119.99994 * 359.97438 * 7 2 1 10 10 C 1.35568 * 116.99911 * 185.41245 * 9 7 2 11 11 C 1.39176 * 119.89880 * 5.93426 * 10 9 7 12 12 C 1.37596 * 120.10032 * 180.02562 * 11 10 9 13 13 C 1.40028 * 119.89806 * 359.97438 * 12 11 10 14 14 C 1.46955 * 120.10529 * 179.97438 * 13 12 11 15 15 C 1.35034 * 120.00421 * 180.02562 * 14 13 12 16 16 C 1.46218 * 120.00011 * 180.02562 * 15 14 13 17 17 O 1.21742 * 120.00385 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99864 * 179.97438 * 16 15 14 19 19 C 1.40008 * 119.99794 * 185.21079 * 18 16 15 20 20 C 1.38870 * 120.01496 * 213.68058 * 19 18 16 21 21 C 1.38090 * 119.97856 * 179.97438 * 20 19 18 22 22 C 1.38721 * 120.01816 * 0.02562 * 21 20 19 23 23 O 1.35973 * 119.98205 * 179.97438 * 22 21 20 24 24 C 1.38724 * 120.03586 * 0.24971 * 22 21 20 25 25 C 1.38087 * 120.01571 * 359.45661 * 24 22 21 26 26 C 1.40031 * 119.79667 * 0.25512 * 13 12 11 27 27 C 1.37592 * 119.89474 * 359.48657 * 26 13 12 28 28 H 0.97004 * 120.00077 * 359.97438 * 1 2 3 29 29 H 1.07993 * 119.95043 * 359.97438 * 11 10 9 30 30 H 1.08000 * 120.05777 * 179.97438 * 12 11 10 31 31 H 1.08005 * 119.99650 * 0.02562 * 14 13 12 32 32 H 1.08001 * 120.00162 * 359.97438 * 15 14 13 33 33 H 0.96996 * 119.99798 * 5.21486 * 18 16 15 34 34 H 1.07996 * 120.01011 * 359.96439 * 20 19 18 35 35 H 1.07995 * 119.98933 * 180.02562 * 21 20 19 36 36 H 0.96702 * 114.00548 * 89.99947 * 23 22 21 37 37 H 1.08002 * 119.99507 * 179.72215 * 24 22 21 38 38 H 1.08004 * 120.00539 * 180.24639 * 25 24 22 39 39 H 1.08005 * 120.05242 * 179.72015 * 26 13 12 40 40 H 1.08000 * 119.94814 * 180.25359 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0086 -1.2013 -0.0005 8 1 3.0887 -1.2012 -0.0001 9 8 1.3347 -2.3686 -0.0005 10 6 2.0685 -3.5029 0.1129 11 6 3.4382 -3.4226 0.3462 12 6 4.1871 -4.5711 0.4615 13 6 3.5689 -5.8221 0.3442 14 6 4.3644 -7.0517 0.4660 15 6 3.7663 -8.2570 0.3520 16 6 4.5578 -9.4804 0.4737 17 8 5.7562 -9.4124 0.6774 18 7 3.9607 -10.6834 0.3605 19 6 4.6958 -11.8536 0.5849 20 6 4.4096 -13.0034 -0.1394 21 6 5.1355 -14.1571 0.0822 22 6 6.1499 -14.1678 1.0283 23 8 6.8638 -15.3043 1.2463 24 6 6.4326 -13.0212 1.7563 25 6 5.7117 -11.8651 1.5316 26 6 2.1914 -5.8978 0.1046 27 6 1.4497 -4.7440 -0.0039 28 1 -0.4850 0.8401 0.0004 29 1 3.9142 -2.4574 0.4361 30 1 5.2500 -4.5080 0.6422 31 1 5.4276 -6.9914 0.6467 32 1 2.7032 -8.3174 0.1717 33 1 3.0218 -10.7384 0.1234 34 1 3.6195 -12.9954 -0.8756 35 1 4.9133 -15.0512 -0.4813 36 1 7.6505 -15.3875 0.6901 37 1 7.2195 -13.0316 2.4960 38 1 5.9346 -10.9714 2.0957 39 1 1.7111 -6.8605 0.0089 40 1 0.3865 -4.8014 -0.1846 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057559977.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:18 Heat of formation + Delta-G solvation = -35.879140 kcal Electronic energy + Delta-G solvation = -24343.371883 eV Core-core repulsion = 20475.460049 eV Total energy + Delta-G solvation = -3867.911834 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.115 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.68189 -39.36168 -39.11490 -37.17222 -36.78830 -34.36275 -33.30577 -32.36769 -31.27078 -30.49090 -29.30611 -27.90327 -25.74495 -24.02831 -23.25307 -22.39399 -22.02318 -20.75467 -19.50037 -18.68230 -18.31827 -17.71856 -17.25959 -17.03209 -15.84364 -15.73310 -15.08057 -14.92051 -14.74891 -14.60737 -14.39359 -14.07799 -13.88405 -13.69459 -13.46905 -13.10094 -12.99848 -12.73018 -12.64311 -12.24372 -11.99829 -11.85389 -11.77414 -11.15705 -11.14598 -10.83767 -10.75385 -10.58591 -10.41272 -9.90673 -9.69221 -9.57565 -9.25374 -8.92858 -8.44141 -8.20608 -7.18400 -6.70493 -4.24998 0.75186 1.07623 1.11712 2.08392 2.44885 2.95972 3.01005 3.01756 3.05060 3.26362 3.56278 3.78041 3.97948 4.44660 4.57365 4.67039 4.84049 4.89359 4.95727 5.04550 5.17517 5.26669 5.31143 5.46794 5.51968 5.60117 5.71394 5.79585 5.95646 6.03077 6.05121 6.16444 6.22630 6.37285 6.40500 6.53142 6.66556 6.72601 6.85844 7.06207 7.16945 7.20779 7.31331 7.36560 7.57999 7.74452 8.10202 8.73946 9.40217 10.45764 Molecular weight = 325.11amu Principal moments of inertia in cm(-1) A = 0.050363 B = 0.001644 C = 0.001603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.829015 B =17022.678722 C =17464.618020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.043 3.957 3 Si 0.945 3.055 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.097 0.903 9 O -0.160 6.160 10 C 0.167 3.833 11 C -0.242 4.242 12 C -0.032 4.032 13 C -0.204 4.204 14 C 0.049 3.951 15 C -0.290 4.290 16 C 0.557 3.443 17 O -0.540 6.540 18 N -0.677 5.677 19 C 0.149 3.851 20 C -0.135 4.135 21 C -0.125 4.125 22 C 0.080 3.920 23 O -0.500 6.500 24 C -0.124 4.124 25 C -0.106 4.106 26 C -0.041 4.041 27 C -0.200 4.200 28 H 0.275 0.725 29 H 0.132 0.868 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.412 0.588 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.387 0.613 37 H 0.130 0.870 38 H 0.140 0.860 39 H 0.118 0.882 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.278 -21.367 -0.131 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.115 0.885 9 O -0.060 6.060 10 C 0.110 3.890 11 C -0.262 4.262 12 C -0.051 4.051 13 C -0.205 4.205 14 C 0.030 3.970 15 C -0.312 4.312 16 C 0.351 3.649 17 O -0.419 6.419 18 N -0.321 5.321 19 C 0.055 3.945 20 C -0.155 4.155 21 C -0.144 4.144 22 C 0.035 3.965 23 O -0.310 6.310 24 C -0.143 4.143 25 C -0.126 4.126 26 C -0.059 4.059 27 C -0.219 4.219 28 H 0.085 0.915 29 H 0.149 0.851 30 H 0.132 0.868 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.248 0.752 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.242 0.758 37 H 0.148 0.852 38 H 0.158 0.842 39 H 0.136 0.864 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.173 -21.088 0.410 22.620 hybrid contribution 0.294 0.838 -0.483 1.011 sum 8.467 -20.250 -0.074 21.949 Atomic orbital electron populations 1.69998 1.06171 1.28492 1.43524 1.25407 0.95912 0.99198 0.95903 0.85708 0.78790 0.79139 0.79482 1.19201 1.20032 1.19214 1.21444 0.92102 0.80568 1.52761 0.88547 1.83920 1.34940 1.11866 1.75294 1.19638 0.90427 0.87795 0.91098 1.21103 0.94191 0.99103 1.11765 1.20995 0.98480 0.91353 0.94250 1.18433 0.93658 0.92026 1.16389 1.22318 0.98819 0.91042 0.84860 1.22306 1.00228 0.91199 1.17422 1.18568 0.87433 0.83553 0.75360 1.90796 1.15041 1.87260 1.48776 1.43524 1.13948 1.04239 1.70391 1.17806 0.95029 0.86419 0.95283 1.20809 1.02304 0.92254 1.00160 1.21177 0.96869 0.98196 0.98169 1.18428 0.95020 0.85941 0.97141 1.84851 1.42148 1.38858 1.65159 1.21318 1.00814 0.91535 1.00641 1.21092 0.96034 0.98564 0.96906 1.20882 0.92642 0.96985 0.95390 1.20146 1.00168 0.89860 1.11753 0.91454 0.85077 0.86762 0.85822 0.85560 0.75207 0.85217 0.85160 0.75752 0.85167 0.84218 0.86373 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.37 13.67 55.48 0.76 -22.62 16 2 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 3 Si 0.95 19.14 29.55 -169.99 -5.02 14.12 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.39 -10.25 9.44 30.91 0.29 -9.96 16 8 H 0.10 2.30 5.28 -52.48 -0.28 2.02 16 9 O -0.16 -4.25 9.74 0.73 0.01 -4.24 16 10 C 0.17 3.75 6.66 -38.89 -0.26 3.49 16 11 C -0.24 -4.87 9.11 -39.47 -0.36 -5.23 16 12 C -0.03 -0.56 9.78 -39.15 -0.38 -0.94 16 13 C -0.20 -3.32 5.87 -105.02 -0.62 -3.94 16 14 C 0.05 0.70 9.45 -37.19 -0.35 0.35 16 15 C -0.29 -3.67 9.41 -37.52 -0.35 -4.02 16 16 C 0.56 7.33 7.47 -13.05 -0.10 7.23 16 17 O -0.54 -8.75 13.93 5.15 0.07 -8.68 16 18 N -0.68 -6.95 5.34 -11.14 -0.06 -7.01 16 19 C 0.15 1.62 6.27 -83.66 -0.52 1.09 16 20 C -0.13 -1.19 9.96 -39.40 -0.39 -1.58 16 21 C -0.13 -1.08 9.98 -39.46 -0.39 -1.47 16 22 C 0.08 0.76 6.70 -39.22 -0.26 0.49 16 23 O -0.50 -4.10 13.50 -19.66 -0.27 -4.37 16 24 C -0.12 -1.26 9.98 -39.46 -0.39 -1.66 16 25 C -0.11 -1.23 8.65 -39.40 -0.34 -1.58 16 26 C -0.04 -0.66 9.40 -39.15 -0.37 -1.03 16 27 C -0.20 -3.87 9.97 -39.47 -0.39 -4.26 16 28 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.13 2.61 5.69 -52.49 -0.30 2.31 16 30 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.12 1.74 7.52 -52.48 -0.39 1.34 16 32 H 0.13 1.33 6.07 -52.49 -0.32 1.02 16 33 H 0.41 2.92 8.80 -40.82 -0.36 2.56 16 34 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.39 1.35 9.06 45.56 0.41 1.77 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.14 1.81 6.43 -52.48 -0.34 1.47 16 39 H 0.12 1.54 6.16 -52.48 -0.32 1.21 16 40 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -31.72 354.27 -7.61 -39.33 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -3.14 Total: 10.13 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -5.29 Total: -22.02 kcal Atomic # 7 Polarization: -30.32 SS G_CDS: 0.70 Total: -29.62 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.19 Total: -17.29 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.72 -7.61 -39.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057559977.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.456 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds