Wall clock time and date at job start Tue Mar 31 2020 14:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81400 * 103.00280 * 2 1 4 4 C 1.52992 * 109.47532 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47419 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.47164 * 179.97438 * 5 4 3 7 7 N 1.46492 * 109.47018 * 180.02562 * 6 5 4 8 8 C 1.34784 * 120.00217 * 180.02562 * 7 6 5 9 9 O 1.21552 * 119.99611 * 359.97438 * 8 7 6 10 10 C 1.47865 * 120.00304 * 179.97438 * 8 7 6 11 11 C 1.39665 * 120.09843 * 359.97438 * 10 8 7 12 12 C 1.38047 * 120.03832 * 180.02562 * 11 10 8 13 13 C 1.38176 * 120.23812 * 359.67600 * 12 11 10 14 14 C 1.39179 * 120.20540 * 0.60009 * 13 12 11 15 15 S 1.76194 * 120.02163 * 179.69520 * 14 13 12 16 16 C 1.76196 * 100.00182 * 265.25136 * 15 14 13 17 17 H 1.08000 * 120.00393 * 5.12593 * 16 15 14 18 18 C 1.38736 * 120.00006 * 185.12109 * 16 15 14 19 19 N 1.31616 * 119.99932 * 359.97438 * 18 16 15 20 20 Si 1.86808 * 119.99686 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46950 * 90.00202 * 20 18 16 22 22 H 1.48495 * 109.46650 * 209.99961 * 20 18 16 23 23 H 1.48498 * 109.47335 * 329.99842 * 20 18 16 24 24 C 1.38875 * 119.95687 * 359.42658 * 14 13 12 25 25 H 1.09009 * 109.47001 * 60.00231 * 1 2 3 26 26 H 1.08994 * 109.47304 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47541 * 300.00903 * 1 2 3 28 28 H 1.08998 * 109.47161 * 59.99201 * 3 2 1 29 29 H 1.09002 * 109.46870 * 299.99539 * 3 2 1 30 30 H 1.08998 * 109.47535 * 59.99448 * 4 3 2 31 31 H 1.09004 * 109.47184 * 299.99574 * 4 3 2 32 32 H 1.09000 * 109.46773 * 60.00358 * 5 4 3 33 33 H 1.08994 * 109.47379 * 299.99988 * 5 4 3 34 34 H 1.09005 * 109.46655 * 60.00207 * 6 5 4 35 35 H 1.09002 * 109.47164 * 300.00138 * 6 5 4 36 36 H 0.96996 * 120.00373 * 359.97438 * 7 6 5 37 37 H 1.08002 * 119.98607 * 0.02562 * 11 10 8 38 38 H 1.07993 * 119.87788 * 179.97438 * 12 11 10 39 39 H 1.08004 * 119.89897 * 180.29644 * 13 12 11 40 40 H 0.97004 * 119.99833 * 179.97438 * 19 18 16 41 41 H 1.08000 * 120.12505 * 180.25503 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 0.0006 5 6 4.0865 3.4307 0.0000 6 6 5.6068 3.6031 0.0013 7 7 5.9363 5.0305 0.0013 8 6 7.2252 5.4246 0.0018 9 8 8.1142 4.5956 0.0028 10 6 7.5579 6.8654 0.0012 11 6 6.5381 7.8197 -0.0004 12 6 6.8501 9.1644 -0.0015 13 6 8.1702 9.5725 0.0058 14 6 9.1944 8.6302 0.0017 15 16 10.8761 9.1560 0.0029 16 6 11.2102 9.1169 -1.7267 17 1 10.4161 8.8985 -2.4253 18 6 12.4934 9.3667 -2.1911 19 7 13.4610 9.6335 -1.3398 20 14 12.8473 9.3260 -4.0249 21 1 12.6435 10.6804 -4.5986 22 1 14.2522 8.9000 -4.2484 23 1 11.9277 8.3651 -4.6853 24 6 8.8901 7.2752 0.0023 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8031 2.2371 0.8899 29 1 1.8032 2.2371 -0.8901 30 1 4.1617 1.4702 -0.8890 31 1 4.1608 1.4705 0.8909 32 1 3.6672 3.9008 0.8896 33 1 3.6680 3.8999 -0.8904 34 1 6.0264 3.1329 -0.8881 35 1 6.0249 3.1341 0.8920 36 1 5.2270 5.6921 0.0002 37 1 5.5048 7.5054 -0.0008 38 1 6.0595 9.9001 -0.0031 39 1 8.4080 10.6260 0.0098 40 1 14.3583 9.8078 -1.6645 41 1 9.6827 6.5416 0.0032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079523909.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:38 Heat of formation + Delta-G solvation = -34.555041 kcal Electronic energy + Delta-G solvation = -21031.416204 eV Core-core repulsion = 17741.758609 eV Total energy + Delta-G solvation = -3289.657595 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.97041 -37.93638 -36.45898 -34.05003 -32.50683 -31.16891 -30.55901 -29.59431 -28.92739 -25.56932 -24.64359 -22.97916 -22.16907 -21.77727 -20.29709 -18.31116 -17.38686 -16.66240 -16.44852 -16.17972 -15.65396 -15.16520 -15.08861 -14.84784 -14.55005 -14.29654 -14.20045 -13.94172 -13.58964 -13.57309 -13.38827 -13.04007 -12.88708 -12.40346 -12.04750 -11.87421 -11.68792 -11.55009 -11.19098 -11.14906 -11.13468 -11.08131 -10.70740 -10.47680 -9.97925 -9.78325 -9.19938 -9.16242 -9.01690 -8.59415 -8.17808 -8.03405 -6.71292 -6.28471 -4.02482 1.15522 1.16145 1.65663 2.09465 3.03298 3.08164 3.20413 3.23521 3.28597 3.47108 4.08587 4.20308 4.25990 4.32679 4.61161 4.62678 4.65858 4.73444 4.81590 4.93106 5.07064 5.08616 5.09119 5.18727 5.22683 5.24455 5.33004 5.47504 5.56465 5.71460 5.73845 5.80558 5.86671 5.98336 6.24143 6.33001 6.57693 6.62330 6.92501 7.18114 7.46730 7.57694 8.27936 8.32773 9.17365 10.78244 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.022399 B = 0.001857 C = 0.001786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.750216 B =15076.940014 C =15670.546836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.267 6.267 3 C -0.083 4.083 4 C -0.102 4.102 5 C -0.126 4.126 6 C 0.120 3.880 7 N -0.734 5.734 8 C 0.563 3.437 9 O -0.533 6.533 10 C -0.155 4.155 11 C -0.090 4.090 12 C -0.141 4.141 13 C -0.055 4.055 14 C -0.107 4.107 15 S -0.034 6.034 16 C -0.520 4.520 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.870 5.870 20 Si 0.921 3.079 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.271 1.271 24 C -0.019 4.019 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.117 0.883 38 H 0.123 0.877 39 H 0.132 0.868 40 H 0.270 0.730 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.317 -11.553 3.327 28.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.041 6.041 3 C -0.231 4.231 4 C -0.141 4.141 5 C -0.165 4.165 6 C -0.004 4.004 7 N -0.387 5.387 8 C 0.351 3.649 9 O -0.410 6.410 10 C -0.160 4.160 11 C -0.110 4.110 12 C -0.161 4.161 13 C -0.076 4.076 14 C -0.217 4.217 15 S 0.200 5.800 16 C -0.668 4.668 17 H 0.094 0.906 18 C -0.136 4.136 19 N -0.505 5.505 20 Si 0.747 3.253 21 H -0.202 1.202 22 H -0.206 1.206 23 H -0.196 1.196 24 C -0.040 4.040 25 H 0.095 0.905 26 H 0.120 0.880 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.234 0.766 37 H 0.134 0.866 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.080 0.920 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.066 -12.715 4.226 27.545 hybrid contribution -1.935 0.957 -2.142 3.041 sum -26.002 -11.759 2.084 28.613 Atomic orbital electron populations 1.23376 0.94128 1.06596 1.04910 1.87050 1.07415 1.11596 1.98078 1.23411 1.00514 0.94145 1.05064 1.21227 0.92453 0.96176 1.04213 1.21775 0.95310 0.96352 1.03109 1.21302 0.94461 0.81775 1.02845 1.45878 1.07705 1.08050 1.77095 1.18419 0.82166 0.88711 0.75574 1.90780 1.46937 1.54193 1.49124 1.19862 0.94943 0.91815 1.09335 1.21124 0.97469 0.93236 0.99134 1.21056 0.96661 0.95340 1.03049 1.21962 0.91776 1.00081 0.93827 1.22863 1.02997 0.94505 1.01378 1.83601 0.98348 1.85591 1.12459 1.22842 0.97852 1.55881 0.90214 0.90609 1.25002 0.94895 0.94423 0.99232 1.69984 1.01646 1.44479 1.34385 0.86121 0.77821 0.78622 0.82768 1.20168 1.20629 1.19564 1.21960 0.94828 0.95937 0.91307 0.90484 0.88049 0.90481 0.89940 0.89935 0.90395 0.90392 0.90949 0.90941 0.91253 0.91246 0.76618 0.86559 0.85864 0.85058 0.92047 0.84294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 10.76 101.05 1.09 0.55 16 2 S -0.27 -1.94 22.38 -107.50 -2.41 -4.35 16 3 C -0.08 -0.45 5.94 37.15 0.22 -0.23 16 4 C -0.10 -0.61 5.22 -26.73 -0.14 -0.75 16 5 C -0.13 -0.73 5.33 -26.73 -0.14 -0.87 16 6 C 0.12 1.13 5.67 -4.04 -0.02 1.10 16 7 N -0.73 -8.12 5.51 -61.24 -0.34 -8.46 16 8 C 0.56 9.06 7.77 -12.32 -0.10 8.97 16 9 O -0.53 -10.68 16.34 5.32 0.09 -10.60 16 10 C -0.15 -2.60 5.87 -105.00 -0.62 -3.21 16 11 C -0.09 -1.21 9.54 -39.12 -0.37 -1.59 16 12 C -0.14 -1.99 10.02 -39.67 -0.40 -2.39 16 13 C -0.06 -0.98 9.79 -39.25 -0.38 -1.37 16 14 C -0.11 -2.29 5.45 -39.00 -0.21 -2.50 16 15 S -0.03 -0.89 21.40 -107.50 -2.30 -3.19 16 16 C -0.52 -14.75 9.46 30.92 0.29 -14.46 16 17 H 0.08 2.13 7.79 -52.49 -0.41 1.72 16 18 C 0.07 2.07 5.49 -17.46 -0.10 1.97 16 19 N -0.87 -25.49 13.22 55.49 0.73 -24.75 16 20 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 24 C -0.02 -0.38 9.34 -38.92 -0.36 -0.74 16 25 H 0.08 0.29 8.14 -51.92 -0.42 -0.14 16 26 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 28 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 29 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.40 3.22 6.50 -40.82 -0.27 2.95 16 37 H 0.12 1.06 6.40 -52.49 -0.34 0.72 16 38 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.13 2.22 8.06 -52.48 -0.42 1.79 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.14 3.09 7.65 -52.49 -0.40 2.69 16 LS Contribution 377.72 15.07 5.69 5.69 Total: -1.00 -33.57 377.72 -10.84 -44.41 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -6.04 Total: 0.26 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -1.24 Total: -15.52 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: 0.40 Total: -33.21 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -4.71 Total: -7.54 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.57 -10.84 -44.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079523909.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.858 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds