Wall clock time and date at job start Tue Mar 31 2020 14:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 119.99755 * 2 1 4 4 H 1.48504 * 109.46872 * 274.65826 * 3 2 1 5 5 H 1.48499 * 109.47350 * 34.65844 * 3 2 1 6 6 H 1.48495 * 109.47231 * 154.66264 * 3 2 1 7 7 C 1.39945 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00000 * 162.24184 * 7 2 1 9 9 C 1.41398 * 120.00238 * 342.23969 * 7 2 1 10 10 C 1.40709 * 120.24400 * 155.28880 * 9 7 2 11 11 C 1.37617 * 119.74313 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.25274 * 0.02562 * 11 10 9 13 13 S 1.76193 * 119.75183 * 179.97438 * 12 11 10 14 14 O 1.42103 * 106.40205 * 203.53514 * 13 12 11 15 15 O 1.42103 * 106.40395 * 336.45301 * 13 12 11 16 16 N 1.65595 * 107.22346 * 89.99826 * 13 12 11 17 17 C 1.46926 * 120.62834 * 269.72121 * 16 13 12 18 18 C 1.53627 * 108.54703 * 126.36397 * 17 16 13 19 19 C 1.53043 * 109.23946 * 54.85561 * 18 17 16 20 20 C 1.53044 * 109.53722 * 298.51447 * 19 18 17 21 21 H 1.09001 * 109.49333 * 301.40959 * 20 19 18 22 22 C 1.53000 * 109.52535 * 181.33339 * 20 19 18 23 23 O 1.42898 * 109.47278 * 65.14148 * 22 20 19 24 24 C 1.46929 * 120.63407 * 89.99668 * 16 13 12 25 25 C 1.38639 * 120.49865 * 359.97438 * 12 11 10 26 26 C 1.37621 * 120.24565 * 0.02562 * 25 12 11 27 27 H 0.96995 * 120.00494 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.13078 * 0.04895 * 10 9 7 29 29 H 1.08004 * 119.87500 * 179.72465 * 11 10 9 30 30 H 1.09002 * 109.58702 * 246.19890 * 17 16 13 31 31 H 1.09006 * 109.58745 * 6.62243 * 17 16 13 32 32 H 1.08994 * 109.63161 * 294.86814 * 18 17 16 33 33 H 1.09002 * 109.46065 * 174.73650 * 18 17 16 34 34 H 1.08996 * 109.46246 * 178.49178 * 19 18 17 35 35 H 1.09001 * 109.44890 * 58.52308 * 19 18 17 36 36 H 1.08995 * 109.47594 * 185.14417 * 22 20 19 37 37 H 1.08999 * 109.47004 * 305.14473 * 22 20 19 38 38 H 0.96698 * 114.00433 * 180.02562 * 23 22 20 39 39 H 1.09001 * 109.58390 * 353.37422 * 24 16 13 40 40 H 1.08994 * 109.58396 * 113.65718 * 24 16 13 41 41 H 1.07993 * 119.87831 * 180.02562 * 25 12 11 42 42 H 1.07999 * 120.12686 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3912 2.1033 -1.3955 5 1 1.4923 2.6223 0.7962 6 1 3.5855 1.4139 0.5991 7 6 2.0080 -1.2119 0.0005 8 1 3.0494 -1.2343 -0.2847 9 6 1.3516 -2.4072 0.3746 10 6 1.8219 -3.6493 -0.0900 11 6 1.1749 -4.8061 0.2801 12 6 0.0635 -4.7509 1.1069 13 16 -0.7552 -6.2402 1.5719 14 8 -2.0865 -5.8771 1.9113 15 8 -0.4424 -7.1994 0.5712 16 7 -0.0455 -6.7740 2.9695 17 6 1.1032 -7.6890 2.9236 18 6 2.2458 -7.0808 3.7511 19 6 1.7399 -6.7781 5.1634 20 6 0.6015 -5.7577 5.0916 21 1 0.9586 -4.8477 4.6094 22 6 0.1182 -5.4303 6.5058 23 8 1.1636 -4.7750 7.2267 24 6 -0.5562 -6.3465 4.2792 25 6 -0.4087 -3.5327 1.5706 26 6 0.2226 -2.3631 1.2133 27 1 -0.4850 0.8400 -0.0004 28 1 2.6876 -3.6947 -0.7342 29 1 1.5314 -5.7603 -0.0789 30 1 0.8186 -8.6542 3.3426 31 1 1.4267 -7.8178 1.8907 32 1 2.5872 -6.1584 3.2815 33 1 3.0723 -7.7894 3.8049 34 1 2.5550 -6.3711 5.7617 35 1 1.3755 -7.6968 5.6231 36 1 -0.7509 -4.7749 6.4502 37 1 -0.1544 -6.3524 7.0192 38 1 0.9271 -4.5376 8.1337 39 1 -1.3279 -5.5892 4.1410 40 1 -0.9757 -7.2039 4.8054 41 1 -1.2751 -3.5013 2.2145 42 1 -0.1466 -1.4152 1.5760 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:18 Heat of formation + Delta-G solvation = -123.329843 kcal Electronic energy + Delta-G solvation = -26302.303839 eV Core-core repulsion = 22566.043809 eV Total energy + Delta-G solvation = -3736.260030 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -38.82261 -37.55541 -36.60968 -36.46711 -35.13844 -34.02520 -32.41841 -31.49784 -30.24349 -29.45614 -25.91346 -25.80521 -24.29829 -22.02446 -21.45929 -21.13078 -20.00351 -18.42207 -17.62094 -17.42969 -17.24821 -16.52724 -15.60988 -15.40746 -15.14632 -14.40717 -14.33866 -14.19246 -14.08501 -13.53967 -13.39932 -13.14215 -13.07497 -12.64354 -12.41558 -12.19558 -12.08377 -11.75229 -11.53590 -11.44766 -11.35964 -11.32231 -11.20930 -11.01103 -10.87092 -10.82694 -10.49658 -10.44508 -10.35901 -9.97688 -9.74022 -9.57877 -9.46806 -8.67737 -7.93342 -7.69044 -7.12839 -4.78522 1.18828 2.27148 2.87710 2.89851 2.93628 2.96580 3.56194 3.67498 4.14710 4.27001 4.53135 4.69051 4.84836 5.00634 5.06280 5.21546 5.24339 5.38658 5.39302 5.42150 5.46710 5.62195 5.73552 5.82693 5.83851 6.00521 6.06990 6.11851 6.23584 6.26987 6.40156 6.49862 6.67297 6.69965 6.82017 7.00454 7.06645 7.35118 7.43733 7.54316 7.64365 7.77983 7.98156 8.33067 8.52571 8.66336 9.78777 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.012747 B = 0.004374 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.149605 B = 6400.394744 C = 7457.438148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.436 4.436 8 H 0.087 0.913 9 C 0.140 3.860 10 C -0.238 4.238 11 C 0.002 3.998 12 C -0.786 4.786 13 S 2.691 3.309 14 O -0.982 6.982 15 O -0.982 6.982 16 N -1.002 6.002 17 C 0.124 3.876 18 C -0.137 4.137 19 C -0.103 4.103 20 C -0.106 4.106 21 H 0.090 0.910 22 C 0.082 3.918 23 O -0.570 6.570 24 C 0.133 3.867 25 C -0.015 4.015 26 C -0.182 4.182 27 H 0.289 0.711 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.045 0.955 38 H 0.376 0.624 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.840 -7.640 11.430 13.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.150 4.150 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.463 4.463 8 H 0.105 0.895 9 C 0.136 3.864 10 C -0.259 4.259 11 C -0.018 4.018 12 C -0.882 4.882 13 S 2.791 3.209 14 O -0.972 6.972 15 O -0.973 6.973 16 N -0.837 5.837 17 C -0.001 4.001 18 C -0.176 4.176 19 C -0.141 4.141 20 C -0.126 4.126 21 H 0.108 0.892 22 C 0.004 3.996 23 O -0.375 6.375 24 C 0.007 3.993 25 C -0.035 4.035 26 C -0.202 4.202 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.222 0.778 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.119 0.881 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.203 -8.063 10.419 13.229 hybrid contribution 0.474 1.492 0.523 1.650 sum 1.677 -6.572 10.942 12.873 Atomic orbital electron populations 1.69823 1.07933 1.30368 1.30662 1.26137 0.94871 1.02123 0.91846 0.86157 0.80787 0.79665 0.79493 1.19102 1.19590 1.17998 1.19930 0.98467 0.91222 1.36698 0.89476 1.17842 0.90051 0.92129 0.86354 1.21014 1.04300 0.92821 1.07734 1.20136 0.91879 0.97327 0.92473 1.29193 1.18449 1.15493 1.25038 1.01375 0.73462 0.74236 0.71809 1.93473 1.34984 1.84963 1.83820 1.93470 1.85463 1.61552 1.56823 1.57955 1.45228 1.60150 1.20391 1.21427 0.85367 0.91822 1.01514 1.22016 0.97526 1.01960 0.96081 1.21408 0.97960 0.98028 0.96678 1.21547 0.96716 1.00451 0.93918 0.89185 1.22140 0.89577 0.95565 0.92362 1.86506 1.41054 1.80548 1.29384 1.21180 0.95102 0.99512 0.83481 1.20219 0.95872 0.91806 0.95623 1.21318 0.99807 0.96852 1.02248 0.89971 0.88241 0.87954 0.91719 0.89265 0.90766 0.91183 0.91267 0.92438 0.93333 0.93710 0.77755 0.89154 0.91577 0.88090 0.86084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.51 10.97 55.55 0.61 -17.90 16 2 C 0.07 1.68 5.14 -17.34 -0.09 1.60 16 3 Si 0.92 17.13 29.60 -169.99 -5.03 12.10 16 4 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 6 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 7 C -0.44 -10.76 9.05 -37.74 -0.34 -11.10 16 8 H 0.09 2.03 7.91 -52.49 -0.41 1.61 16 9 C 0.14 3.57 5.57 -106.83 -0.60 2.97 16 10 C -0.24 -5.66 9.80 -38.88 -0.38 -6.04 16 11 C 0.00 0.04 9.49 -39.66 -0.38 -0.33 16 12 C -0.79 -17.43 6.00 -39.29 -0.24 -17.67 16 13 S 2.69 52.89 5.69 -107.50 -0.61 52.28 16 14 O -0.98 -21.16 15.97 -57.17 -0.91 -22.07 16 15 O -0.98 -20.95 15.96 -57.17 -0.91 -21.87 16 16 N -1.00 -15.51 3.28 -113.27 -0.37 -15.88 16 17 C 0.12 1.64 6.41 -3.48 -0.02 1.62 16 18 C -0.14 -1.66 6.10 -26.38 -0.16 -1.82 16 19 C -0.10 -1.20 5.08 -26.69 -0.14 -1.33 16 20 C -0.11 -1.35 2.58 -90.50 -0.23 -1.58 16 21 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 22 C 0.08 0.85 6.43 37.16 0.24 1.09 16 23 O -0.57 -6.24 13.18 -35.23 -0.46 -6.71 16 24 C 0.13 1.78 5.66 -3.71 -0.02 1.76 16 25 C -0.01 -0.35 9.49 -39.66 -0.38 -0.72 16 26 C -0.18 -4.57 8.70 -38.87 -0.34 -4.91 16 27 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 28 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 29 H 0.10 2.07 7.59 -52.48 -0.40 1.67 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.23 7.12 -51.93 -0.37 0.86 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.83 7.80 -51.93 -0.40 0.43 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.38 2.31 9.12 45.56 0.42 2.72 16 39 H 0.09 1.26 7.13 -51.93 -0.37 0.89 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 2.18 7.60 -52.49 -0.40 1.78 16 42 H 0.12 3.08 6.18 -52.49 -0.32 2.76 16 LS Contribution 353.37 15.07 5.33 5.33 Total: -1.00 -30.96 353.37 -10.64 -41.60 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.20 Total: 9.61 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: -3.07 Total: -36.47 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.24 Total: -33.79 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -2.29 Total: -50.65 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Atomic # 16 Polarization: 52.89 SS G_CDS: -0.61 Total: 52.28 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.96 -10.64 -41.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.729 kcal (2) G-P(sol) polarization free energy of solvation -30.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds