Wall clock time and date at job start Tue Mar 31 2020 14:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 119.99755 * 2 1 4 4 H 1.48504 * 109.46872 * 274.65826 * 3 2 1 5 5 H 1.48499 * 109.47350 * 34.65844 * 3 2 1 6 6 H 1.48495 * 109.47231 * 154.66264 * 3 2 1 7 7 C 1.39945 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00000 * 162.24184 * 7 2 1 9 9 C 1.41398 * 120.00238 * 342.23969 * 7 2 1 10 10 C 1.40709 * 120.24400 * 155.28880 * 9 7 2 11 11 C 1.37617 * 119.74313 * 180.02562 * 10 9 7 12 12 C 1.38634 * 120.25274 * 0.02562 * 11 10 9 13 13 S 1.76193 * 119.75183 * 179.97438 * 12 11 10 14 14 O 1.42103 * 106.40205 * 203.53514 * 13 12 11 15 15 O 1.42103 * 106.40395 * 336.45301 * 13 12 11 16 16 N 1.65595 * 107.22346 * 89.99826 * 13 12 11 17 17 C 1.46926 * 120.62834 * 269.72121 * 16 13 12 18 18 C 1.53627 * 108.54703 * 126.36397 * 17 16 13 19 19 C 1.53043 * 109.23946 * 54.85561 * 18 17 16 20 20 C 1.53044 * 109.53722 * 298.51447 * 19 18 17 21 21 H 1.09001 * 109.49333 * 301.40959 * 20 19 18 22 22 C 1.53000 * 109.52535 * 181.33339 * 20 19 18 23 23 O 1.42898 * 109.47278 * 65.14148 * 22 20 19 24 24 C 1.46929 * 120.63407 * 89.99668 * 16 13 12 25 25 C 1.38639 * 120.49865 * 359.97438 * 12 11 10 26 26 C 1.37621 * 120.24565 * 0.02562 * 25 12 11 27 27 H 0.96995 * 120.00494 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.13078 * 0.04895 * 10 9 7 29 29 H 1.08004 * 119.87500 * 179.72465 * 11 10 9 30 30 H 1.09002 * 109.58702 * 246.19890 * 17 16 13 31 31 H 1.09006 * 109.58745 * 6.62243 * 17 16 13 32 32 H 1.08994 * 109.63161 * 294.86814 * 18 17 16 33 33 H 1.09002 * 109.46065 * 174.73650 * 18 17 16 34 34 H 1.08996 * 109.46246 * 178.49178 * 19 18 17 35 35 H 1.09001 * 109.44890 * 58.52308 * 19 18 17 36 36 H 1.08995 * 109.47594 * 185.14417 * 22 20 19 37 37 H 1.08999 * 109.47004 * 305.14473 * 22 20 19 38 38 H 0.96698 * 114.00433 * 180.02562 * 23 22 20 39 39 H 1.09001 * 109.58390 * 353.37422 * 24 16 13 40 40 H 1.08994 * 109.58396 * 113.65718 * 24 16 13 41 41 H 1.07993 * 119.87831 * 180.02562 * 25 12 11 42 42 H 1.07999 * 120.12686 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3912 2.1033 -1.3955 5 1 1.4923 2.6223 0.7962 6 1 3.5855 1.4139 0.5991 7 6 2.0080 -1.2119 0.0005 8 1 3.0494 -1.2343 -0.2847 9 6 1.3516 -2.4072 0.3746 10 6 1.8219 -3.6493 -0.0900 11 6 1.1749 -4.8061 0.2801 12 6 0.0635 -4.7509 1.1069 13 16 -0.7552 -6.2402 1.5719 14 8 -2.0865 -5.8771 1.9113 15 8 -0.4424 -7.1994 0.5712 16 7 -0.0455 -6.7740 2.9695 17 6 1.1032 -7.6890 2.9236 18 6 2.2458 -7.0808 3.7511 19 6 1.7399 -6.7781 5.1634 20 6 0.6015 -5.7577 5.0916 21 1 0.9586 -4.8477 4.6094 22 6 0.1182 -5.4303 6.5058 23 8 1.1636 -4.7750 7.2267 24 6 -0.5562 -6.3465 4.2792 25 6 -0.4087 -3.5327 1.5706 26 6 0.2226 -2.3631 1.2133 27 1 -0.4850 0.8400 -0.0004 28 1 2.6876 -3.6947 -0.7342 29 1 1.5314 -5.7603 -0.0789 30 1 0.8186 -8.6542 3.3426 31 1 1.4267 -7.8178 1.8907 32 1 2.5872 -6.1584 3.2815 33 1 3.0723 -7.7894 3.8049 34 1 2.5550 -6.3711 5.7617 35 1 1.3755 -7.6968 5.6231 36 1 -0.7509 -4.7749 6.4502 37 1 -0.1544 -6.3524 7.0192 38 1 0.9271 -4.5376 8.1337 39 1 -1.3279 -5.5892 4.1410 40 1 -0.9757 -7.2039 4.8054 41 1 -1.2751 -3.5013 2.2145 42 1 -0.1466 -1.4152 1.5760 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:17 Heat of formation + Delta-G solvation = -145.125370 kcal Electronic energy + Delta-G solvation = -26303.248964 eV Core-core repulsion = 22566.043809 eV Total energy + Delta-G solvation = -3737.205155 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.83490 -39.38860 -38.24117 -37.37981 -36.81378 -35.81850 -33.49427 -32.50863 -32.08308 -31.31174 -27.63493 -26.82523 -25.40183 -23.34566 -22.97804 -22.93715 -21.06229 -19.83030 -19.44651 -18.75837 -18.28872 -18.15413 -17.23101 -16.85987 -16.09844 -15.86098 -15.64266 -15.35076 -15.28129 -15.10377 -15.02361 -14.53432 -14.14264 -14.05716 -13.96851 -13.62789 -13.57330 -13.26493 -13.09966 -12.99367 -12.89177 -12.88652 -12.73474 -12.58146 -12.08208 -12.03374 -11.84077 -11.56828 -11.50625 -11.35269 -11.24884 -11.20878 -10.77276 -9.94180 -9.74837 -9.56650 -8.88576 -6.66342 -0.37159 0.47526 1.03638 1.33953 1.40367 1.51378 2.08958 2.14259 2.51211 2.91520 3.30474 3.49431 3.56980 3.68321 3.92205 4.05500 4.22113 4.26399 4.29360 4.34704 4.39115 4.54442 4.57667 4.66516 4.77494 4.84058 4.87340 4.89732 4.91381 5.02306 5.10002 5.22027 5.22722 5.30817 5.38001 5.50156 5.52860 5.57378 5.68134 5.78177 5.91749 6.13790 6.47250 6.66629 6.79422 6.98368 8.06969 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.012747 B = 0.004374 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.149605 B = 6400.394744 C = 7457.438148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.034 3.966 3 Si 0.992 3.008 4 H -0.258 1.258 5 H -0.263 1.263 6 H -0.254 1.254 7 C -0.467 4.467 8 H 0.092 0.908 9 C 0.111 3.889 10 C -0.257 4.257 11 C -0.001 4.001 12 C -0.797 4.797 13 S 2.718 3.282 14 O -1.000 7.000 15 O -0.997 6.997 16 N -0.996 5.996 17 C 0.116 3.884 18 C -0.135 4.135 19 C -0.098 4.098 20 C -0.107 4.107 21 H 0.051 0.949 22 C 0.084 3.916 23 O -0.592 6.592 24 C 0.126 3.874 25 C -0.020 4.020 26 C -0.206 4.206 27 H 0.298 0.702 28 H 0.111 0.889 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.045 0.955 33 H 0.096 0.904 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.396 0.604 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.264 -8.963 13.010 15.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.185 4.185 3 Si 0.811 3.189 4 H -0.182 1.182 5 H -0.187 1.187 6 H -0.177 1.177 7 C -0.494 4.494 8 H 0.110 0.890 9 C 0.108 3.892 10 C -0.277 4.277 11 C -0.021 4.021 12 C -0.889 4.889 13 S 2.815 3.185 14 O -0.991 6.991 15 O -0.987 6.987 16 N -0.833 5.833 17 C -0.009 4.009 18 C -0.174 4.174 19 C -0.136 4.136 20 C -0.128 4.128 21 H 0.069 0.931 22 C 0.006 3.994 23 O -0.401 6.401 24 C 0.001 3.999 25 C -0.040 4.040 26 C -0.227 4.227 27 H 0.109 0.891 28 H 0.129 0.871 29 H 0.142 0.858 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.115 0.885 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.246 0.754 39 H 0.097 0.903 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.634 -9.361 11.992 15.300 hybrid contribution 0.306 1.753 0.114 1.783 sum 1.940 -7.607 12.106 14.429 Atomic orbital electron populations 1.69862 1.09496 1.31869 1.31094 1.27045 0.95542 1.05309 0.90631 0.85036 0.79220 0.74829 0.79816 1.18239 1.18669 1.17719 1.20224 0.98937 0.92127 1.38132 0.89000 1.18198 0.90661 0.93334 0.87052 1.21254 1.05160 0.92919 1.08349 1.20424 0.91757 0.97858 0.92063 1.29759 1.17957 1.16833 1.24364 1.00577 0.72759 0.72936 0.72251 1.93444 1.36232 1.85118 1.84302 1.93445 1.85615 1.61235 1.58417 1.57631 1.45978 1.59921 1.19816 1.21744 0.84730 0.92654 1.01741 1.22009 0.98002 1.01270 0.96086 1.21386 0.97304 0.98650 0.96210 1.21509 0.96947 0.99186 0.95135 0.93079 1.22122 0.89210 0.96957 0.91160 1.86449 1.41700 1.80829 1.31097 1.21448 0.95164 1.00767 0.82497 1.20406 0.96041 0.91952 0.95575 1.21331 1.00845 0.97034 1.03450 0.89052 0.87090 0.85783 0.88343 0.90008 0.93633 0.88535 0.91833 0.89787 0.93110 0.90788 0.75403 0.90274 0.87947 0.87030 0.87293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.92 10.97 21.83 0.24 -39.68 16 2 C 0.03 1.61 5.14 85.26 0.44 2.04 16 3 Si 0.99 35.27 29.60 68.60 2.03 37.30 16 4 H -0.26 -8.79 7.11 99.48 0.71 -8.08 16 5 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 6 H -0.25 -8.82 7.11 99.48 0.71 -8.12 16 7 C -0.47 -23.91 9.05 23.46 0.21 -23.70 16 8 H 0.09 4.42 7.91 -2.91 -0.02 4.40 16 9 C 0.11 5.91 5.57 -21.29 -0.12 5.80 16 10 C -0.26 -12.60 9.80 22.73 0.22 -12.37 16 11 C 0.00 -0.06 9.49 22.22 0.21 0.15 16 12 C -0.80 -35.98 6.00 22.46 0.13 -35.84 16 13 S 2.72 105.15 5.69 -56.49 -0.32 104.83 16 14 O -1.00 -42.60 15.97 -128.00 -2.04 -44.64 16 15 O -1.00 -41.42 15.96 -128.00 -2.04 -43.47 16 16 N -1.00 -29.14 3.28 -512.27 -1.68 -30.82 16 17 C 0.12 2.76 6.41 86.51 0.55 3.32 16 18 C -0.13 -3.00 6.10 30.82 0.19 -2.81 16 19 C -0.10 -2.02 5.08 30.62 0.16 -1.87 16 20 C -0.11 -2.58 2.58 -10.72 -0.03 -2.61 16 21 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 22 C 0.08 1.55 6.43 71.98 0.46 2.01 16 23 O -0.59 -12.00 13.18 -148.98 -1.96 -13.97 16 24 C 0.13 3.11 5.66 86.36 0.49 3.60 16 25 C -0.02 -0.96 9.49 22.22 0.21 -0.75 16 26 C -0.21 -10.91 8.70 22.73 0.20 -10.71 16 27 H 0.30 13.21 8.30 -92.71 -0.77 12.44 16 28 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 29 H 0.12 4.99 7.59 -2.91 -0.02 4.97 16 30 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 2.10 7.12 -2.38 -0.02 2.08 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.10 1.64 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.41 7.80 -2.39 -0.02 1.39 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.40 4.09 9.12 -74.06 -0.68 3.41 16 39 H 0.08 2.14 7.13 -2.39 -0.02 2.12 16 40 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.11 5.00 7.60 -2.91 -0.02 4.98 16 42 H 0.11 5.89 6.18 -2.91 -0.02 5.87 16 Total: -1.00 -68.64 353.37 -2.10 -70.74 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: 0.36 Total: 33.44 kcal Atomic # 6 Polarization: -77.06 SS G_CDS: 3.33 Total: -73.73 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -1.44 Total: -70.50 kcal Atomic # 8 Polarization: -96.02 SS G_CDS: -6.05 Total: -102.08 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Atomic # 16 Polarization: 105.15 SS G_CDS: -0.32 Total: 104.83 kcal Total: -68.64 -2.10 -70.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.385 kcal (2) G-P(sol) polarization free energy of solvation -68.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds