Wall clock time and date at job start Tue Mar 31 2020 14:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86794 * 120.00006 * 2 1 4 4 H 1.48504 * 109.47556 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47307 * 240.00044 * 3 2 1 6 6 H 1.48499 * 109.47060 * 120.00146 * 3 2 1 7 7 C 1.39947 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99387 * 154.27943 * 7 2 1 9 9 C 1.41393 * 120.00447 * 334.27844 * 7 2 1 10 10 C 1.40717 * 120.24150 * 334.58111 * 9 7 2 11 11 C 1.37622 * 119.74258 * 179.71939 * 10 9 7 12 12 C 1.38634 * 120.24593 * 0.57607 * 11 10 9 13 13 S 1.76202 * 119.74737 * 179.69631 * 12 11 10 14 14 O 1.42098 * 106.40191 * 23.51959 * 13 12 11 15 15 O 1.42099 * 106.40244 * 156.43551 * 13 12 11 16 16 N 1.65598 * 107.21875 * 269.97784 * 13 12 11 17 17 C 1.46920 * 120.63015 * 89.99964 * 16 13 12 18 18 C 1.53194 * 108.77922 * 233.58433 * 17 16 13 19 19 C 1.53046 * 109.31172 * 305.37319 * 18 17 16 20 20 C 1.53032 * 109.54196 * 61.35870 * 19 18 17 21 21 H 1.09003 * 109.49774 * 58.62009 * 20 19 18 22 22 C 1.52994 * 109.49875 * 178.68763 * 20 19 18 23 23 O 1.42904 * 109.47191 * 294.99929 * 22 20 19 24 24 C 1.46926 * 120.63039 * 269.72171 * 16 13 12 25 25 C 1.38637 * 120.50218 * 359.67216 * 12 11 10 26 26 C 1.37611 * 120.25009 * 0.04733 * 25 12 11 27 27 H 0.96996 * 120.00212 * 174.30067 * 1 2 3 28 28 H 1.07998 * 120.12873 * 359.97438 * 10 9 7 29 29 H 1.07997 * 119.87625 * 180.27232 * 11 10 9 30 30 H 1.09003 * 109.58881 * 353.37618 * 17 16 13 31 31 H 1.09003 * 109.58785 * 113.65592 * 17 16 13 32 32 H 1.09011 * 109.49360 * 65.31313 * 18 17 16 33 33 H 1.08991 * 109.50191 * 185.41578 * 18 17 16 34 34 H 1.09000 * 109.45829 * 181.38132 * 19 18 17 35 35 H 1.09003 * 109.45559 * 301.33665 * 19 18 17 36 36 H 1.09007 * 109.47466 * 54.99725 * 22 20 19 37 37 H 1.08996 * 109.47682 * 175.00331 * 22 20 19 38 38 H 0.96696 * 114.00105 * 180.02562 * 23 22 20 39 39 H 1.08997 * 109.58593 * 246.20269 * 24 16 13 40 40 H 1.09003 * 109.58276 * 6.62464 * 24 16 13 41 41 H 1.08003 * 119.87115 * 180.02562 * 25 12 11 42 42 H 1.08001 * 120.13153 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2773 2.7465 0.0006 5 1 3.0960 1.6964 -1.2124 6 1 3.0960 1.6963 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0076 -1.2585 -0.4054 9 6 1.4061 -2.3756 0.5325 10 6 0.3967 -2.2692 1.5072 11 6 -0.1862 -3.4083 2.0137 12 6 0.2259 -4.6575 1.5759 13 16 -0.5238 -6.1075 2.2391 14 8 -1.8018 -5.7143 2.7202 15 8 -0.3390 -7.1327 1.2727 16 7 0.3594 -6.5523 3.5674 17 6 0.0188 -6.0359 4.9000 18 6 1.2692 -5.4020 5.5177 19 6 2.4096 -6.4226 5.5116 20 6 2.7321 -6.8212 4.0698 21 1 3.0096 -5.9341 3.5004 22 6 3.8940 -7.8166 4.0628 23 8 5.0741 -7.1747 4.5502 24 6 1.4948 -7.4756 3.4366 25 6 1.2230 -4.7744 0.6198 26 6 1.8159 -3.6488 0.0952 27 1 -0.4850 -0.8358 -0.0834 28 1 0.0779 -1.2971 1.8534 29 1 -0.9641 -3.3290 2.7586 30 1 -0.7659 -5.2845 4.8112 31 1 -0.3285 -6.8539 5.5312 32 1 1.5599 -4.5281 4.9345 33 1 1.0557 -5.1010 6.5433 34 1 3.2935 -5.9822 5.9730 35 1 2.1089 -7.3065 6.0742 36 1 3.6503 -8.6641 4.7036 37 1 4.0654 -8.1679 3.0454 38 1 5.8525 -7.7478 4.5732 39 1 1.2678 -8.4091 3.9515 40 1 1.6843 -7.6745 2.3817 41 1 1.5359 -5.7527 0.2857 42 1 2.5928 -3.7421 -0.6492 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:21 Heat of formation + Delta-G solvation = -129.731592 kcal Electronic energy + Delta-G solvation = -26322.551559 eV Core-core repulsion = 22586.013928 eV Total energy + Delta-G solvation = -3736.537631 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -38.86625 -37.81557 -36.67846 -36.52402 -35.21260 -34.24621 -32.46360 -31.55358 -30.13159 -29.50206 -25.96226 -25.65197 -24.35055 -22.06036 -21.53875 -21.34086 -20.05952 -18.50226 -18.22303 -17.48026 -17.33100 -16.61484 -15.62323 -15.21126 -14.81201 -14.54521 -14.44385 -14.29793 -14.15216 -13.74549 -13.60504 -13.15192 -13.12569 -12.69774 -12.51481 -12.28705 -12.13600 -11.86051 -11.59615 -11.52297 -11.41879 -11.37690 -11.26118 -11.05733 -10.87773 -10.58741 -10.52633 -10.45653 -10.26813 -10.02220 -9.93214 -9.61965 -9.34002 -8.73547 -8.12743 -7.95512 -7.54666 -4.90143 1.11757 2.19242 2.73767 2.97964 3.03169 3.19723 3.49840 3.77055 4.09460 4.20430 4.46114 4.63949 4.79562 4.95570 5.00343 5.14625 5.17705 5.23385 5.34149 5.35891 5.42476 5.56506 5.68445 5.78290 5.79709 5.92962 5.95142 5.98011 6.18794 6.23217 6.35247 6.45477 6.51320 6.59792 6.85855 6.86056 7.08458 7.27312 7.42036 7.44910 7.49151 7.49820 7.83790 8.02167 8.40588 8.51902 9.65849 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.004241 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.540599 B = 6600.352012 C = 7525.678715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.034 3.966 3 Si 1.068 2.932 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.484 4.484 8 H 0.085 0.915 9 C 0.118 3.882 10 C -0.235 4.235 11 C 0.006 3.994 12 C -0.797 4.797 13 S 2.693 3.307 14 O -0.980 6.980 15 O -0.983 6.983 16 N -1.002 6.002 17 C 0.124 3.876 18 C -0.137 4.137 19 C -0.103 4.103 20 C -0.106 4.106 21 H 0.089 0.911 22 C 0.082 3.918 23 O -0.570 6.570 24 C 0.133 3.867 25 C 0.008 3.992 26 C -0.237 4.237 27 H 0.306 0.694 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.376 0.624 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.099 -9.884 9.102 14.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.192 4.192 3 Si 0.890 3.110 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.510 4.510 8 H 0.104 0.896 9 C 0.114 3.886 10 C -0.255 4.255 11 C -0.014 4.014 12 C -0.893 4.893 13 S 2.793 3.207 14 O -0.971 6.971 15 O -0.974 6.974 16 N -0.837 5.837 17 C -0.001 4.001 18 C -0.176 4.176 19 C -0.141 4.141 20 C -0.126 4.126 21 H 0.107 0.893 22 C 0.003 3.997 23 O -0.375 6.375 24 C 0.007 3.993 25 C -0.012 4.012 26 C -0.258 4.258 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.223 0.777 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.613 -8.241 8.918 12.989 hybrid contribution 1.111 -1.627 -0.196 1.980 sum 5.724 -9.868 8.722 14.360 Atomic orbital electron populations 1.70454 1.08310 1.35066 1.24867 1.27328 0.95632 1.04912 0.91286 0.83578 0.75737 0.73250 0.78411 1.19408 1.19694 1.19572 1.20973 1.03196 0.94052 1.32789 0.89645 1.17867 0.89581 0.92681 0.88474 1.21176 1.04349 0.97132 1.02828 1.20171 0.94520 0.91517 0.95171 1.29187 1.23101 1.14672 1.22337 1.01320 0.73288 0.74171 0.71938 1.93479 1.38333 1.84400 1.80908 1.93469 1.86700 1.57672 1.59510 1.57946 1.45312 1.59091 1.21374 1.21340 0.97180 0.98523 0.83080 1.21942 0.95415 0.99246 1.01016 1.21407 0.98426 0.98790 0.95452 1.21628 0.93105 0.99612 0.98269 0.89275 1.22143 0.85400 0.94483 0.97627 1.86509 1.20102 1.42525 1.88360 1.21281 0.84680 0.91531 1.01806 1.20144 0.91747 0.97416 0.91903 1.20957 1.06449 0.92504 1.05850 0.88026 0.87239 0.87800 0.89290 0.91674 0.90828 0.91071 0.91230 0.92387 0.93662 0.93378 0.77728 0.91460 0.89191 0.87881 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.09 12.32 55.55 0.68 -18.41 16 2 C 0.03 0.80 4.93 -17.34 -0.09 0.71 16 3 Si 1.07 19.75 30.00 -169.99 -5.10 14.65 16 4 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 5 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 6 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 7 C -0.48 -11.94 8.98 -37.74 -0.34 -12.28 16 8 H 0.09 2.01 7.96 -52.49 -0.42 1.60 16 9 C 0.12 2.97 5.30 -106.82 -0.57 2.41 16 10 C -0.23 -5.77 7.96 -38.87 -0.31 -6.08 16 11 C 0.01 0.15 9.49 -39.66 -0.38 -0.23 16 12 C -0.80 -17.41 6.00 -39.29 -0.24 -17.65 16 13 S 2.69 52.18 5.69 -107.50 -0.61 51.57 16 14 O -0.98 -20.92 15.97 -57.17 -0.91 -21.84 16 15 O -0.98 -20.60 15.97 -57.17 -0.91 -21.52 16 16 N -1.00 -15.36 3.28 -113.27 -0.37 -15.73 16 17 C 0.12 1.66 6.37 -3.71 -0.02 1.63 16 18 C -0.14 -1.69 6.08 -26.61 -0.16 -1.85 16 19 C -0.10 -1.19 5.08 -26.69 -0.14 -1.33 16 20 C -0.11 -1.32 2.59 -90.28 -0.23 -1.55 16 21 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 22 C 0.08 0.82 6.43 37.15 0.24 1.06 16 23 O -0.57 -6.08 13.17 -35.23 -0.46 -6.54 16 24 C 0.13 1.73 5.69 -3.48 -0.02 1.71 16 25 C 0.01 0.18 9.49 -39.66 -0.38 -0.20 16 26 C -0.24 -5.61 9.80 -38.87 -0.38 -5.99 16 27 H 0.31 7.89 6.71 -40.82 -0.27 7.61 16 28 H 0.11 2.73 6.50 -52.49 -0.34 2.39 16 29 H 0.10 2.19 7.60 -52.49 -0.40 1.79 16 30 H 0.09 1.25 7.13 -51.93 -0.37 0.88 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.84 7.79 -51.93 -0.40 0.43 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.38 2.19 9.12 45.56 0.42 2.61 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.21 7.12 -51.93 -0.37 0.84 16 41 H 0.10 2.06 7.60 -52.48 -0.40 1.66 16 42 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 352.63 15.07 5.31 5.31 Total: -1.00 -30.74 352.63 -10.54 -41.28 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -5.16 Total: 10.84 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: -3.01 Total: -39.62 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.31 Total: -34.14 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -2.29 Total: -49.89 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.10 Total: 14.65 kcal Atomic # 16 Polarization: 52.18 SS G_CDS: -0.61 Total: 51.57 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.74 -10.54 -41.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.450 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds