Wall clock time and date at job start Tue Mar 31 2020 14:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86794 * 120.00006 * 2 1 4 4 H 1.48504 * 109.47556 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.47307 * 240.00044 * 3 2 1 6 6 H 1.48499 * 109.47060 * 120.00146 * 3 2 1 7 7 C 1.39947 * 119.99580 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99387 * 154.27943 * 7 2 1 9 9 C 1.41393 * 120.00447 * 334.27844 * 7 2 1 10 10 C 1.40717 * 120.24150 * 334.58111 * 9 7 2 11 11 C 1.37622 * 119.74258 * 179.71939 * 10 9 7 12 12 C 1.38634 * 120.24593 * 0.57607 * 11 10 9 13 13 S 1.76202 * 119.74737 * 179.69631 * 12 11 10 14 14 O 1.42098 * 106.40191 * 23.51959 * 13 12 11 15 15 O 1.42099 * 106.40244 * 156.43551 * 13 12 11 16 16 N 1.65598 * 107.21875 * 269.97784 * 13 12 11 17 17 C 1.46920 * 120.63015 * 89.99964 * 16 13 12 18 18 C 1.53194 * 108.77922 * 233.58433 * 17 16 13 19 19 C 1.53046 * 109.31172 * 305.37319 * 18 17 16 20 20 C 1.53032 * 109.54196 * 61.35870 * 19 18 17 21 21 H 1.09003 * 109.49774 * 58.62009 * 20 19 18 22 22 C 1.52994 * 109.49875 * 178.68763 * 20 19 18 23 23 O 1.42904 * 109.47191 * 294.99929 * 22 20 19 24 24 C 1.46926 * 120.63039 * 269.72171 * 16 13 12 25 25 C 1.38637 * 120.50218 * 359.67216 * 12 11 10 26 26 C 1.37611 * 120.25009 * 0.04733 * 25 12 11 27 27 H 0.96996 * 120.00212 * 174.30067 * 1 2 3 28 28 H 1.07998 * 120.12873 * 359.97438 * 10 9 7 29 29 H 1.07997 * 119.87625 * 180.27232 * 11 10 9 30 30 H 1.09003 * 109.58881 * 353.37618 * 17 16 13 31 31 H 1.09003 * 109.58785 * 113.65592 * 17 16 13 32 32 H 1.09011 * 109.49360 * 65.31313 * 18 17 16 33 33 H 1.08991 * 109.50191 * 185.41578 * 18 17 16 34 34 H 1.09000 * 109.45829 * 181.38132 * 19 18 17 35 35 H 1.09003 * 109.45559 * 301.33665 * 19 18 17 36 36 H 1.09007 * 109.47466 * 54.99725 * 22 20 19 37 37 H 1.08996 * 109.47682 * 175.00331 * 22 20 19 38 38 H 0.96696 * 114.00105 * 180.02562 * 23 22 20 39 39 H 1.08997 * 109.58593 * 246.20269 * 24 16 13 40 40 H 1.09003 * 109.58276 * 6.62464 * 24 16 13 41 41 H 1.08003 * 119.87115 * 180.02562 * 25 12 11 42 42 H 1.08001 * 120.13153 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 1.2773 2.7465 0.0006 5 1 3.0960 1.6964 -1.2124 6 1 3.0960 1.6963 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0076 -1.2585 -0.4054 9 6 1.4061 -2.3756 0.5325 10 6 0.3967 -2.2692 1.5072 11 6 -0.1862 -3.4083 2.0137 12 6 0.2259 -4.6575 1.5759 13 16 -0.5238 -6.1075 2.2391 14 8 -1.8018 -5.7143 2.7202 15 8 -0.3390 -7.1327 1.2727 16 7 0.3594 -6.5523 3.5674 17 6 0.0188 -6.0359 4.9000 18 6 1.2692 -5.4020 5.5177 19 6 2.4096 -6.4226 5.5116 20 6 2.7321 -6.8212 4.0698 21 1 3.0096 -5.9341 3.5004 22 6 3.8940 -7.8166 4.0628 23 8 5.0741 -7.1747 4.5502 24 6 1.4948 -7.4756 3.4366 25 6 1.2230 -4.7744 0.6198 26 6 1.8159 -3.6488 0.0952 27 1 -0.4850 -0.8358 -0.0834 28 1 0.0779 -1.2971 1.8534 29 1 -0.9641 -3.3290 2.7586 30 1 -0.7659 -5.2845 4.8112 31 1 -0.3285 -6.8539 5.5312 32 1 1.5599 -4.5281 4.9345 33 1 1.0557 -5.1010 6.5433 34 1 3.2935 -5.9822 5.9730 35 1 2.1089 -7.3065 6.0742 36 1 3.6503 -8.6641 4.7036 37 1 4.0654 -8.1679 3.0454 38 1 5.8525 -7.7478 4.5732 39 1 1.2678 -8.4091 3.9515 40 1 1.6843 -7.6745 2.3817 41 1 1.5359 -5.7527 0.2857 42 1 2.5928 -3.7421 -0.6492 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092131214.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:21 Heat of formation + Delta-G solvation = -151.257354 kcal Electronic energy + Delta-G solvation = -26323.484986 eV Core-core repulsion = 22586.013928 eV Total energy + Delta-G solvation = -3737.471058 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.86973 -39.65502 -38.30070 -37.40254 -36.87283 -36.06037 -33.52639 -32.55959 -31.98123 -31.35261 -27.49552 -26.85317 -25.44145 -23.37760 -23.24137 -22.96334 -21.10329 -20.08555 -19.86500 -18.82600 -18.32479 -18.19688 -17.03312 -16.61122 -16.19141 -16.03599 -15.60025 -15.45891 -15.38507 -15.22552 -15.10522 -14.55633 -14.36589 -14.15625 -14.03611 -13.67514 -13.61313 -13.32027 -13.25036 -13.10494 -12.93883 -12.85219 -12.77350 -12.11705 -12.07797 -11.98362 -11.82651 -11.78243 -11.51946 -11.38144 -11.29959 -11.08574 -10.78594 -10.05907 -9.89791 -9.81487 -9.41570 -6.80767 -0.43520 0.37222 0.84203 1.46761 1.52891 1.77060 2.07263 2.22796 2.45110 2.84937 3.26515 3.30027 3.51993 3.63816 3.88757 4.01635 4.11921 4.14356 4.18305 4.31975 4.35350 4.51289 4.54364 4.62870 4.64920 4.74342 4.79767 4.84291 4.86297 5.00120 5.00765 5.17996 5.20250 5.27024 5.34513 5.39787 5.48861 5.51092 5.52996 5.61364 5.70046 5.97064 6.15396 6.53596 6.65831 6.97673 7.76254 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.013410 B = 0.004241 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2087.540599 B = 6600.352012 C = 7525.678715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.003 3.997 3 Si 1.120 2.880 4 H -0.269 1.269 5 H -0.252 1.252 6 H -0.260 1.260 7 C -0.515 4.515 8 H 0.089 0.911 9 C 0.094 3.906 10 C -0.253 4.253 11 C 0.002 3.998 12 C -0.804 4.804 13 S 2.720 3.280 14 O -0.999 6.999 15 O -0.995 6.995 16 N -0.995 5.995 17 C 0.116 3.884 18 C -0.135 4.135 19 C -0.098 4.098 20 C -0.107 4.107 21 H 0.051 0.949 22 C 0.084 3.916 23 O -0.593 6.593 24 C 0.126 3.874 25 C 0.006 3.994 26 C -0.256 4.256 27 H 0.289 0.711 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.042 0.958 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.397 0.603 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.126 0.874 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.991 -11.738 10.724 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.216 4.216 3 Si 0.935 3.065 4 H -0.193 1.193 5 H -0.176 1.176 6 H -0.185 1.185 7 C -0.541 4.541 8 H 0.107 0.893 9 C 0.090 3.910 10 C -0.274 4.274 11 C -0.018 4.018 12 C -0.896 4.896 13 S 2.816 3.184 14 O -0.989 6.989 15 O -0.986 6.986 16 N -0.833 5.833 17 C -0.008 4.008 18 C -0.174 4.174 19 C -0.136 4.136 20 C -0.128 4.128 21 H 0.070 0.930 22 C 0.006 3.994 23 O -0.402 6.402 24 C 0.001 3.999 25 C -0.014 4.014 26 C -0.276 4.276 27 H 0.101 0.899 28 H 0.116 0.884 29 H 0.135 0.865 30 H 0.096 0.904 31 H 0.118 0.882 32 H 0.061 0.939 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.246 0.754 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.144 0.856 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.534 -10.092 10.511 15.587 hybrid contribution 0.825 -1.277 -0.590 1.630 sum 6.358 -11.369 9.921 16.374 Atomic orbital electron populations 1.70568 1.09129 1.33883 1.27339 1.28752 0.95532 1.07922 0.89414 0.82981 0.74837 0.69137 0.79569 1.19312 1.17568 1.18489 1.21191 1.03669 0.94871 1.34392 0.89301 1.18201 0.90080 0.93723 0.88960 1.21181 1.05308 0.97261 1.03610 1.20390 0.94581 0.91616 0.95214 1.29806 1.21991 1.15935 1.21828 1.00556 0.72808 0.72865 0.72163 1.93452 1.39670 1.84548 1.81246 1.93447 1.86892 1.57325 1.60918 1.57628 1.45863 1.59062 1.20783 1.21627 0.97395 0.99596 0.82215 1.21935 0.95385 0.98369 1.01741 1.21386 0.97727 0.99417 0.95038 1.21591 0.94018 0.98903 0.98250 0.93027 1.22125 0.84421 0.94150 0.98739 1.86453 1.21230 1.44051 1.88422 1.21582 0.83893 0.92255 1.02211 1.20446 0.91410 0.98033 0.91510 1.21194 1.07266 0.92598 1.06523 0.89878 0.88439 0.86464 0.90399 0.88242 0.93915 0.88653 0.91862 0.89720 0.90847 0.92827 0.75366 0.87832 0.89810 0.85624 0.87225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.88 12.32 21.83 0.27 -40.61 16 2 C 0.00 0.17 4.93 85.26 0.42 0.59 16 3 Si 1.12 39.92 30.00 68.60 2.06 41.98 16 4 H -0.27 -9.47 7.11 99.48 0.71 -8.76 16 5 H -0.25 -8.12 7.11 99.48 0.71 -7.41 16 6 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 7 C -0.52 -26.34 8.98 23.46 0.21 -26.13 16 8 H 0.09 4.32 7.96 -2.91 -0.02 4.30 16 9 C 0.09 4.94 5.30 -21.29 -0.11 4.83 16 10 C -0.25 -13.06 7.96 22.73 0.18 -12.88 16 11 C 0.00 0.09 9.49 22.22 0.21 0.30 16 12 C -0.80 -35.39 6.00 22.46 0.13 -35.25 16 13 S 2.72 102.55 5.69 -56.49 -0.32 102.23 16 14 O -1.00 -41.67 15.97 -128.00 -2.04 -43.71 16 15 O -1.00 -40.22 15.97 -128.00 -2.04 -42.26 16 16 N -1.00 -28.47 3.28 -512.28 -1.68 -30.15 16 17 C 0.12 2.81 6.37 86.36 0.55 3.36 16 18 C -0.14 -3.07 6.08 30.67 0.19 -2.89 16 19 C -0.10 -2.00 5.08 30.62 0.16 -1.85 16 20 C -0.11 -2.46 2.59 -10.57 -0.03 -2.49 16 21 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 22 C 0.08 1.44 6.43 71.98 0.46 1.91 16 23 O -0.59 -11.39 13.17 -148.98 -1.96 -13.35 16 24 C 0.13 2.92 5.69 86.51 0.49 3.41 16 25 C 0.01 0.25 9.49 22.22 0.21 0.47 16 26 C -0.26 -12.43 9.80 22.73 0.22 -12.21 16 27 H 0.29 15.76 6.71 -92.71 -0.62 15.14 16 28 H 0.10 5.15 6.50 -2.91 -0.02 5.14 16 29 H 0.12 5.06 7.60 -2.91 -0.02 5.04 16 30 H 0.08 2.07 7.13 -2.39 -0.02 2.06 16 31 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.06 1.39 7.79 -2.39 -0.02 1.37 16 35 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.40 3.67 9.12 -74.06 -0.68 2.99 16 39 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.08 2.07 7.12 -2.39 -0.02 2.05 16 41 H 0.13 4.95 7.60 -2.91 -0.02 4.93 16 42 H 0.11 4.96 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -68.18 352.63 -1.92 -70.11 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: 0.51 Total: 34.60 kcal Atomic # 6 Polarization: -82.13 SS G_CDS: 3.30 Total: -78.83 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -1.41 Total: -70.76 kcal Atomic # 8 Polarization: -93.28 SS G_CDS: -6.05 Total: -99.33 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.06 Total: 41.98 kcal Atomic # 16 Polarization: 102.55 SS G_CDS: -0.32 Total: 102.23 kcal Total: -68.18 -1.92 -70.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131214.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.152 kcal (2) G-P(sol) polarization free energy of solvation -68.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds