Wall clock time and date at job start Tue Mar 31 2020 14:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.46882 * 2 1 4 4 S 1.81405 * 109.46943 * 179.97438 * 3 2 1 5 5 C 1.81397 * 103.00363 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47414 * 180.02562 * 5 4 3 7 7 O 1.21297 * 119.99898 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00342 * 180.02562 * 6 5 4 9 9 C 1.40134 * 120.00068 * 185.53129 * 8 6 5 10 10 C 1.38648 * 120.10201 * 24.81560 * 9 8 6 11 11 C 1.38254 * 120.00935 * 180.02562 * 10 9 8 12 12 C 1.38304 * 120.20737 * 359.97261 * 11 10 9 13 13 C 1.38191 * 120.20073 * 0.02728 * 12 11 10 14 14 C 1.38782 * 119.99201 * 359.97438 * 13 12 11 15 15 S 1.76198 * 120.10682 * 180.02562 * 14 13 12 16 16 C 1.81399 * 103.00125 * 359.95629 * 15 14 13 17 17 C 1.50695 * 109.47411 * 179.97438 * 16 15 14 18 18 H 1.08008 * 119.99843 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00093 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00270 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99816 * 180.02562 * 19 17 16 22 22 H 1.48490 * 109.47218 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46895 * 120.00280 * 21 19 17 24 24 H 1.48507 * 109.46800 * 239.99923 * 21 19 17 25 25 H 1.09002 * 109.46751 * 299.99502 * 1 2 3 26 26 H 1.09001 * 109.46719 * 59.99292 * 1 2 3 27 27 H 1.09002 * 109.47037 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46751 * 240.00498 * 2 1 3 29 29 H 1.08991 * 109.46839 * 120.00736 * 2 1 3 30 30 H 1.09002 * 109.47020 * 60.00663 * 3 2 1 31 31 H 1.08991 * 109.47985 * 300.00035 * 3 2 1 32 32 H 1.09003 * 109.46996 * 59.99712 * 5 4 3 33 33 H 1.09001 * 109.46842 * 300.00415 * 5 4 3 34 34 H 0.97000 * 119.99717 * 5.52573 * 8 6 5 35 35 H 1.08003 * 119.99520 * 359.97438 * 10 9 8 36 36 H 1.07995 * 119.89520 * 179.97438 * 11 10 9 37 37 H 1.08001 * 119.89265 * 179.74764 * 12 11 10 38 38 H 1.08006 * 120.00386 * 180.02562 * 13 12 11 39 39 H 1.09003 * 109.46737 * 300.00429 * 16 15 14 40 40 H 1.09002 * 109.46929 * 59.99775 * 16 15 14 41 41 H 0.96998 * 119.99750 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8541 1.4425 0.0008 5 6 4.2622 3.2099 0.0015 6 6 5.7596 3.3798 0.0015 7 8 6.4806 2.4043 0.0016 8 7 6.2977 4.6155 0.0025 9 6 7.6849 4.7757 -0.1144 10 6 8.4491 3.7943 -0.7269 11 6 9.8176 3.9541 -0.8407 12 6 10.4290 5.0916 -0.3457 13 6 9.6756 6.0752 0.2664 14 6 8.3013 5.9234 0.3852 15 16 7.3377 7.1760 1.1644 16 6 8.5776 8.4176 1.6244 17 6 7.8993 9.5738 2.3129 18 1 6.8293 9.5626 2.4595 19 6 8.6446 10.6459 2.7557 20 7 9.9475 10.6598 2.5767 21 14 7.8038 12.0788 3.6098 22 1 6.3435 11.8211 3.6871 23 1 8.3529 12.2286 4.9814 24 1 8.0471 13.3254 2.8403 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6768 1.9564 -0.8899 32 1 3.8429 3.6793 0.8914 33 1 3.8436 3.6798 -0.8885 34 1 5.7247 5.3939 0.0841 35 1 7.9753 2.9044 -1.1144 36 1 10.4111 3.1882 -1.3178 37 1 11.4989 5.2093 -0.4337 38 1 10.1563 6.9625 0.6515 39 1 9.3073 7.9698 2.2991 40 1 9.0836 8.7753 0.7277 41 1 10.4717 11.4143 2.8879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108199522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:08 Heat of formation + Delta-G solvation = -25.477841 kcal Electronic energy + Delta-G solvation = -21416.894079 eV Core-core repulsion = 18127.630101 eV Total energy + Delta-G solvation = -3289.263978 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.44971 -38.16002 -35.06942 -34.74609 -33.31352 -31.11413 -30.76313 -28.70254 -28.55791 -27.60719 -23.63701 -22.83542 -22.44117 -21.88714 -20.35928 -18.13335 -17.18891 -16.92096 -16.35399 -16.23116 -16.02767 -15.56307 -15.10942 -14.60241 -14.48909 -14.12941 -14.05115 -13.84276 -13.53267 -13.30841 -13.04366 -13.00246 -12.66674 -12.43502 -12.24325 -11.90297 -11.78277 -11.56256 -11.28219 -11.23312 -11.01519 -10.80106 -10.47754 -10.19629 -10.14241 -9.80553 -9.73317 -9.27129 -9.21470 -8.69689 -8.06784 -7.88372 -6.65284 -6.32768 -4.38837 1.13737 1.44026 1.65429 2.24358 2.32538 2.50821 3.03559 3.16870 3.24642 3.29007 3.54107 4.05961 4.24041 4.38560 4.46856 4.47187 4.68528 4.85653 4.90453 5.01116 5.04942 5.20580 5.24038 5.29061 5.31306 5.54161 5.58920 5.66557 5.74005 5.77915 5.81671 6.16045 6.40318 6.51535 6.66265 6.82858 6.88810 6.92318 7.24097 7.34983 7.59805 7.82509 7.97598 8.62230 9.25542 10.78368 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.002597 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.090141 B =10778.559860 C =12719.128292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.107 4.107 4 S -0.183 6.183 5 C -0.129 4.129 6 C 0.530 3.470 7 O -0.502 6.502 8 N -0.655 5.655 9 C 0.149 3.851 10 C -0.117 4.117 11 C -0.121 4.121 12 C -0.117 4.117 13 C -0.114 4.114 14 C -0.095 4.095 15 S -0.173 6.173 16 C 0.078 3.922 17 C -0.520 4.520 18 H 0.069 0.931 19 C 0.068 3.932 20 N -0.888 5.888 21 Si 0.909 3.091 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.415 0.585 35 H 0.143 0.857 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.727 -16.276 -7.315 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.255 4.255 4 S 0.044 5.956 5 C -0.280 4.280 6 C 0.315 3.685 7 O -0.377 6.377 8 N -0.300 5.300 9 C 0.049 3.951 10 C -0.138 4.138 11 C -0.143 4.143 12 C -0.137 4.137 13 C -0.139 4.139 14 C -0.210 4.210 15 S 0.073 5.927 16 C -0.069 4.069 17 C -0.559 4.559 18 H 0.087 0.913 19 C -0.137 4.137 20 N -0.525 5.525 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.252 0.748 35 H 0.161 0.839 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.153 0.847 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.649 -17.568 -7.030 22.761 hybrid contribution -0.023 2.437 0.334 2.460 sum -12.672 -15.130 -6.697 20.841 Atomic orbital electron populations 1.21769 0.94643 1.02161 1.02086 1.21225 0.96023 0.93852 1.03508 1.23592 0.95124 1.01785 1.05045 1.87501 1.04600 1.05412 1.98086 1.23472 0.96969 0.99899 1.07649 1.19704 0.89115 0.83073 0.76559 1.90715 1.61497 1.38399 1.47085 1.43386 1.06384 1.08734 1.71520 1.17184 0.82224 0.95301 1.00405 1.21209 0.93975 0.99280 0.99386 1.20955 0.94162 0.97846 1.01307 1.21050 0.99680 0.93943 0.99051 1.21232 0.91945 1.00361 1.00363 1.21794 0.97213 0.98730 1.03282 1.84983 1.20706 1.17274 1.69693 1.21376 0.93207 0.92375 0.99894 1.20637 0.94538 1.01739 1.38993 0.91314 1.24958 0.94877 0.98315 0.95530 1.69951 1.05217 1.31589 1.45769 0.86263 0.79715 0.81362 0.79134 1.19407 1.20605 1.20608 0.92466 0.92515 0.92098 0.90938 0.90889 0.89977 0.90044 0.86721 0.86812 0.74790 0.83903 0.86044 0.86036 0.84658 0.93651 0.93670 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.11 -0.70 5.94 -26.73 -0.16 -0.86 16 3 C -0.11 -0.77 5.94 37.16 0.22 -0.55 16 4 S -0.18 -1.98 20.87 -107.50 -2.24 -4.22 16 5 C -0.13 -1.26 6.43 36.00 0.23 -1.03 16 6 C 0.53 7.31 7.66 -10.99 -0.08 7.22 16 7 O -0.50 -8.49 13.04 5.54 0.07 -8.41 16 8 N -0.66 -9.46 5.17 -9.71 -0.05 -9.51 16 9 C 0.15 2.55 6.44 -83.43 -0.54 2.01 16 10 C -0.12 -1.90 8.72 -39.42 -0.34 -2.24 16 11 C -0.12 -1.80 10.04 -39.55 -0.40 -2.19 16 12 C -0.12 -1.82 10.04 -39.57 -0.40 -2.22 16 13 C -0.11 -2.09 9.36 -39.40 -0.37 -2.46 16 14 C -0.09 -1.78 6.12 -38.90 -0.24 -2.02 16 15 S -0.17 -3.52 20.55 -107.50 -2.21 -5.73 16 16 C 0.08 1.92 4.09 36.00 0.15 2.07 16 17 C -0.52 -13.89 9.13 -34.44 -0.31 -14.20 16 18 H 0.07 1.82 7.71 -52.48 -0.40 1.41 16 19 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 20 N -0.89 -24.81 13.29 55.43 0.74 -24.07 16 21 Si 0.91 20.52 29.54 -169.99 -5.02 15.50 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.11 0.93 8.14 -51.92 -0.42 0.50 16 33 H 0.11 0.84 8.14 -51.92 -0.42 0.42 16 34 H 0.41 5.34 7.65 -40.82 -0.31 5.03 16 35 H 0.14 2.31 5.79 -52.48 -0.30 2.01 16 36 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 37 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.14 2.62 5.88 -52.48 -0.31 2.31 16 39 H 0.05 1.17 7.75 -51.92 -0.40 0.77 16 40 H 0.05 1.16 7.75 -51.92 -0.40 0.75 16 41 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 369.28 15.07 5.57 5.57 Total: -1.00 -30.30 369.28 -11.04 -41.34 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.92 Total: 4.67 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: -1.97 Total: -15.12 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.69 Total: -33.58 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.07 Total: -8.41 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: -5.50 SS G_CDS: -4.45 Total: -9.96 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.30 -11.04 -41.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108199522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.859 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds