Wall clock time and date at job start Tue Mar 31 2020 14:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.46882 * 2 1 4 4 S 1.81405 * 109.46943 * 179.97438 * 3 2 1 5 5 C 1.81397 * 103.00363 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47414 * 180.02562 * 5 4 3 7 7 O 1.21297 * 119.99898 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00342 * 180.02562 * 6 5 4 9 9 C 1.40134 * 120.00068 * 185.53129 * 8 6 5 10 10 C 1.38648 * 120.10201 * 24.81560 * 9 8 6 11 11 C 1.38254 * 120.00935 * 180.02562 * 10 9 8 12 12 C 1.38304 * 120.20737 * 359.97261 * 11 10 9 13 13 C 1.38191 * 120.20073 * 0.02728 * 12 11 10 14 14 C 1.38782 * 119.99201 * 359.97438 * 13 12 11 15 15 S 1.76198 * 120.10682 * 180.02562 * 14 13 12 16 16 C 1.81399 * 103.00125 * 359.95629 * 15 14 13 17 17 C 1.50695 * 109.47411 * 179.97438 * 16 15 14 18 18 H 1.08008 * 119.99843 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00093 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00270 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99816 * 180.02562 * 19 17 16 22 22 H 1.48490 * 109.47218 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46895 * 120.00280 * 21 19 17 24 24 H 1.48507 * 109.46800 * 239.99923 * 21 19 17 25 25 H 1.09002 * 109.46751 * 299.99502 * 1 2 3 26 26 H 1.09001 * 109.46719 * 59.99292 * 1 2 3 27 27 H 1.09002 * 109.47037 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46751 * 240.00498 * 2 1 3 29 29 H 1.08991 * 109.46839 * 120.00736 * 2 1 3 30 30 H 1.09002 * 109.47020 * 60.00663 * 3 2 1 31 31 H 1.08991 * 109.47985 * 300.00035 * 3 2 1 32 32 H 1.09003 * 109.46996 * 59.99712 * 5 4 3 33 33 H 1.09001 * 109.46842 * 300.00415 * 5 4 3 34 34 H 0.97000 * 119.99717 * 5.52573 * 8 6 5 35 35 H 1.08003 * 119.99520 * 359.97438 * 10 9 8 36 36 H 1.07995 * 119.89520 * 179.97438 * 11 10 9 37 37 H 1.08001 * 119.89265 * 179.74764 * 12 11 10 38 38 H 1.08006 * 120.00386 * 180.02562 * 13 12 11 39 39 H 1.09003 * 109.46737 * 300.00429 * 16 15 14 40 40 H 1.09002 * 109.46929 * 59.99775 * 16 15 14 41 41 H 0.96998 * 119.99750 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8541 1.4425 0.0008 5 6 4.2622 3.2099 0.0015 6 6 5.7596 3.3798 0.0015 7 8 6.4806 2.4043 0.0016 8 7 6.2977 4.6155 0.0025 9 6 7.6849 4.7757 -0.1144 10 6 8.4491 3.7943 -0.7269 11 6 9.8176 3.9541 -0.8407 12 6 10.4290 5.0916 -0.3457 13 6 9.6756 6.0752 0.2664 14 6 8.3013 5.9234 0.3852 15 16 7.3377 7.1760 1.1644 16 6 8.5776 8.4176 1.6244 17 6 7.8993 9.5738 2.3129 18 1 6.8293 9.5626 2.4595 19 6 8.6446 10.6459 2.7557 20 7 9.9475 10.6598 2.5767 21 14 7.8038 12.0788 3.6098 22 1 6.3435 11.8211 3.6871 23 1 8.3529 12.2286 4.9814 24 1 8.0471 13.3254 2.8403 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6768 1.9564 -0.8899 32 1 3.8429 3.6793 0.8914 33 1 3.8436 3.6798 -0.8885 34 1 5.7247 5.3939 0.0841 35 1 7.9753 2.9044 -1.1144 36 1 10.4111 3.1882 -1.3178 37 1 11.4989 5.2093 -0.4337 38 1 10.1563 6.9625 0.6515 39 1 9.3073 7.9698 2.2991 40 1 9.0836 8.7753 0.7277 41 1 10.4717 11.4143 2.8879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108199522.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:08 Heat of formation + Delta-G solvation = -40.808538 kcal Electronic energy + Delta-G solvation = -21417.558868 eV Core-core repulsion = 18127.630101 eV Total energy + Delta-G solvation = -3289.928767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.64329 -39.42802 -36.00383 -35.54054 -35.33680 -32.26407 -32.02729 -30.65633 -29.69739 -28.11464 -25.49920 -24.19640 -23.66344 -22.56625 -21.51248 -19.49882 -18.52596 -18.26628 -17.97599 -17.16693 -16.94632 -16.82540 -16.23789 -16.02575 -15.70641 -15.23275 -15.00231 -14.83274 -14.72853 -14.57659 -14.35469 -14.28261 -14.20751 -13.74823 -13.28909 -13.14578 -12.80578 -12.77015 -12.55560 -12.38886 -12.08758 -11.92830 -11.70881 -11.64319 -11.61036 -11.02839 -11.00598 -10.90848 -10.86420 -10.54626 -9.36630 -8.70880 -8.37201 -8.22157 -6.51592 0.14118 0.30058 0.38098 0.74865 1.39721 1.40183 1.40701 1.54197 1.55689 1.74412 1.98057 2.34269 2.74786 2.98371 3.43007 3.85596 3.90908 3.97330 3.98777 4.12346 4.19602 4.34987 4.40336 4.44492 4.47278 4.57428 4.69761 4.83052 4.84547 4.86050 4.89172 5.10820 5.16732 5.20899 5.24802 5.39582 5.39664 5.51127 5.53854 5.80023 5.96714 6.21257 6.55812 6.87005 7.17453 8.75008 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.002597 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.090141 B =10778.559860 C =12719.128292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C -0.089 4.089 4 S -0.247 6.247 5 C -0.114 4.114 6 C 0.528 3.472 7 O -0.535 6.535 8 N -0.654 5.654 9 C 0.150 3.850 10 C -0.125 4.125 11 C -0.106 4.106 12 C -0.116 4.116 13 C -0.131 4.131 14 C -0.122 4.122 15 S -0.152 6.152 16 C 0.081 3.919 17 C -0.540 4.540 18 H 0.069 0.931 19 C 0.016 3.984 20 N -0.922 5.922 21 Si 0.978 3.022 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.273 1.273 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.136 0.864 33 H 0.143 0.857 34 H 0.421 0.579 35 H 0.147 0.853 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.114 0.886 39 H 0.020 0.980 40 H 0.023 0.977 41 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.492 -16.804 -7.784 23.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.237 4.237 4 S -0.021 6.021 5 C -0.264 4.264 6 C 0.316 3.684 7 O -0.411 6.411 8 N -0.299 5.299 9 C 0.048 3.952 10 C -0.147 4.147 11 C -0.127 4.127 12 C -0.136 4.136 13 C -0.156 4.156 14 C -0.237 4.237 15 S 0.093 5.907 16 C -0.066 4.066 17 C -0.579 4.579 18 H 0.087 0.913 19 C -0.185 4.185 20 N -0.560 5.560 21 Si 0.801 3.199 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.199 1.199 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.154 0.846 33 H 0.161 0.839 34 H 0.260 0.740 35 H 0.164 0.836 36 H 0.176 0.824 37 H 0.167 0.833 38 H 0.132 0.868 39 H 0.038 0.962 40 H 0.041 0.959 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.430 -18.111 -7.513 24.345 hybrid contribution 0.549 2.425 0.400 2.518 sum -13.882 -15.686 -7.113 22.121 Atomic orbital electron populations 1.21742 0.93201 1.02721 1.02588 1.21243 0.97079 0.93415 1.02908 1.23628 0.91407 1.02403 1.06258 1.87751 1.08920 1.07119 1.98303 1.23426 0.93772 0.99185 1.10045 1.20367 0.90739 0.82095 0.75165 1.90696 1.62745 1.39276 1.48399 1.43442 1.05499 1.09513 1.71459 1.17323 0.83607 0.94590 0.99638 1.21416 0.94744 0.99083 0.99436 1.21381 0.93894 0.97907 0.99498 1.21328 1.00939 0.93266 0.98052 1.21235 0.92213 1.00682 1.01440 1.21792 0.97473 0.99176 1.05234 1.84539 1.18926 1.16635 1.70624 1.21014 0.93906 0.93474 0.98252 1.20976 0.94712 1.02757 1.39417 0.91297 1.25915 0.95482 1.01099 0.96026 1.70061 1.06691 1.32602 1.46657 0.85199 0.78915 0.77783 0.77980 1.18526 1.20036 1.19858 0.92058 0.91876 0.91590 0.91462 0.91699 0.88900 0.88568 0.84590 0.83913 0.74020 0.83575 0.82419 0.83286 0.86818 0.96177 0.95855 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.91 71.99 0.71 -0.43 16 2 C -0.11 -1.24 5.94 30.60 0.18 -1.06 16 3 C -0.09 -1.09 5.94 71.98 0.43 -0.66 16 4 S -0.25 -5.08 20.87 -56.49 -1.18 -6.25 16 5 C -0.11 -1.99 6.43 71.23 0.46 -1.53 16 6 C 0.53 13.94 7.66 87.66 0.67 14.61 16 7 O -0.53 -17.72 13.04 -3.08 -0.04 -17.76 16 8 N -0.65 -18.25 5.17 -303.01 -1.57 -19.82 16 9 C 0.15 5.03 6.44 38.22 0.25 5.28 16 10 C -0.13 -3.91 8.72 22.37 0.20 -3.71 16 11 C -0.11 -2.91 10.04 22.29 0.22 -2.68 16 12 C -0.12 -3.47 10.04 22.27 0.22 -3.24 16 13 C -0.13 -4.91 9.36 22.39 0.21 -4.70 16 14 C -0.12 -4.64 6.12 22.71 0.14 -4.50 16 15 S -0.15 -6.34 20.55 -56.49 -1.16 -7.50 16 16 C 0.08 4.17 4.09 71.23 0.29 4.47 16 17 C -0.54 -29.53 9.13 25.60 0.23 -29.30 16 18 H 0.07 3.68 7.71 -2.91 -0.02 3.66 16 19 C 0.02 0.89 5.46 84.65 0.46 1.35 16 20 N -0.92 -52.80 13.29 21.45 0.28 -52.52 16 21 Si 0.98 42.11 29.54 68.60 2.03 44.14 16 22 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.14 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.42 10.39 7.65 -92.71 -0.71 9.68 16 35 H 0.15 4.54 5.79 -2.91 -0.02 4.52 16 36 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 37 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 38 H 0.11 4.70 5.88 -2.91 -0.02 4.68 16 39 H 0.02 1.11 7.75 -2.39 -0.02 1.09 16 40 H 0.02 1.27 7.75 -2.39 -0.02 1.25 16 41 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -67.23 369.28 3.37 -63.87 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: 0.33 Total: 21.96 kcal Atomic # 6 Polarization: -30.79 SS G_CDS: 4.68 Total: -26.12 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -1.28 Total: -72.34 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.04 Total: -17.76 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Atomic # 16 Polarization: -11.42 SS G_CDS: -2.34 Total: -13.76 kcal Total: -67.23 3.37 -63.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108199522.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.060 kcal (2) G-P(sol) polarization free energy of solvation -67.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds