Wall clock time and date at job start Tue Mar 31 2020 14:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99834 * 2 1 4 4 H 1.48498 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47286 * 300.00185 * 3 2 1 6 6 H 1.48501 * 109.47023 * 60.00357 * 3 2 1 7 7 C 1.37873 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00463 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47535 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.46986 * 180.02562 * 10 9 7 12 12 O 1.42105 * 110.54530 * 291.62628 * 11 10 9 13 13 O 1.42101 * 110.54333 * 68.37799 * 11 10 9 14 14 N 1.65599 * 104.44748 * 180.02562 * 11 10 9 15 15 C 1.47150 * 120.98183 * 90.00324 * 14 11 10 16 16 C 1.53299 * 108.38058 * 230.51125 * 15 14 11 17 17 O 1.42960 * 109.22644 * 307.69193 * 16 15 14 18 18 C 1.42964 * 114.16060 * 62.58360 * 17 16 15 19 19 H 1.08994 * 109.51588 * 57.39367 * 18 17 16 20 20 C 1.50700 * 109.51490 * 177.49698 * 18 17 16 21 21 C 1.38235 * 119.99739 * 39.72330 * 20 18 17 22 22 C 1.38238 * 119.99959 * 179.81475 * 21 20 18 23 23 C 1.38239 * 119.99702 * 0.41960 * 22 21 20 24 24 C 1.38227 * 120.00127 * 359.81079 * 23 22 21 25 25 C 1.38230 * 120.00149 * 0.02562 * 24 23 22 26 26 C 1.47153 * 120.98277 * 269.71800 * 14 11 10 27 27 H 0.96996 * 119.99792 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46657 * 60.00257 * 9 7 2 29 29 H 1.09005 * 109.47061 * 300.00589 * 9 7 2 30 30 H 1.09003 * 109.46593 * 60.00142 * 10 9 7 31 31 H 1.08994 * 109.46870 * 300.00510 * 10 9 7 32 32 H 1.08993 * 109.68420 * 350.22934 * 15 14 11 33 33 H 1.09002 * 109.68530 * 110.75655 * 15 14 11 34 34 H 1.08994 * 109.51504 * 67.62523 * 16 15 14 35 35 H 1.09002 * 109.50902 * 187.72157 * 16 15 14 36 36 H 1.07999 * 120.00278 * 359.97438 * 21 20 18 37 37 H 1.07997 * 119.99951 * 180.21278 * 22 21 20 38 38 H 1.07999 * 119.99741 * 179.79572 * 23 22 21 39 39 H 1.08000 * 120.00158 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.00237 * 179.97438 * 25 24 23 41 41 H 1.09000 * 109.68152 * 249.21175 * 26 14 11 42 42 H 1.09000 * 109.68018 * 9.76266 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2330 -0.0013 12 8 0.6640 -5.4200 1.2354 13 8 0.6649 -5.4193 -1.2386 14 7 2.5206 -6.3926 -0.0005 15 6 3.0604 -6.9232 1.2614 16 6 4.5905 -6.8513 1.2008 17 8 5.0443 -7.4826 0.0011 18 6 4.5920 -6.8515 -1.1994 19 1 4.9087 -5.8086 -1.2041 20 6 5.1782 -7.5609 -2.3927 21 6 5.2785 -8.9396 -2.3966 22 6 5.8127 -9.5907 -3.4929 23 6 6.2546 -8.8624 -4.5816 24 6 6.1587 -7.4835 -4.5757 25 6 5.6214 -6.8327 -3.4809 26 6 3.0580 -6.9274 -1.2617 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8897 30 1 2.8720 -3.6043 0.8895 31 1 2.8721 -3.6042 -0.8904 32 1 2.6977 -6.3241 2.0965 33 1 2.7458 -7.9590 1.3886 34 1 4.9065 -5.8082 1.2053 35 1 5.0135 -7.3636 2.0650 36 1 4.9371 -9.5084 -1.5443 37 1 5.8878 -10.6680 -3.4974 38 1 6.6749 -9.3708 -5.4367 39 1 6.5043 -6.9144 -5.4261 40 1 5.5468 -5.7553 -3.4761 41 1 2.7436 -7.9638 -1.3845 42 1 2.6934 -6.3312 -2.0982 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111327041.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:27 Heat of formation + Delta-G solvation = -91.694850 kcal Electronic energy + Delta-G solvation = -25694.544569 eV Core-core repulsion = 21959.656336 eV Total energy + Delta-G solvation = -3734.888234 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.11584 -38.61992 -36.74688 -35.55812 -34.83811 -33.93999 -33.07859 -31.21336 -31.08339 -29.82638 -26.90876 -25.65155 -24.58850 -22.93757 -22.27095 -21.57201 -20.68771 -18.74932 -17.80386 -17.09750 -16.66324 -16.60594 -16.06338 -15.71894 -15.54157 -15.28868 -14.77557 -14.60050 -14.50945 -14.37278 -13.99960 -13.53839 -13.47878 -13.05520 -12.74089 -12.57963 -12.35216 -11.95247 -11.81577 -11.78226 -11.66844 -11.43516 -11.28256 -11.23981 -11.13165 -11.01269 -10.64341 -10.59046 -10.44743 -10.32233 -9.77197 -9.34771 -9.10143 -9.04297 -8.66754 -8.54688 -6.16463 -4.22358 0.63386 1.10275 1.23181 2.86778 3.22451 3.29912 3.33010 3.39776 3.67148 4.22311 4.34342 4.38235 4.55727 4.59728 4.69667 4.72316 4.83957 4.93692 4.99282 5.09308 5.15711 5.18825 5.19830 5.33462 5.39774 5.41364 5.52677 5.63437 5.68354 5.74753 5.78919 5.86990 5.97881 6.25879 6.32559 6.37716 6.41320 6.46100 6.79147 6.96081 7.24625 7.30310 7.76406 8.12643 8.81194 9.42780 10.94563 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.003454 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.025568 B = 8104.087451 C = 9085.146485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.589 4.589 11 S 2.588 3.412 12 O -0.961 6.961 13 O -0.961 6.961 14 N -1.010 6.010 15 C 0.087 3.913 16 C 0.047 3.953 17 O -0.371 6.371 18 C 0.117 3.883 19 H 0.076 0.924 20 C -0.082 4.082 21 C -0.090 4.090 22 C -0.125 4.125 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.106 4.106 26 C 0.101 3.899 27 H 0.265 0.735 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.079 0.921 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.268 -17.934 -3.856 22.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.722 4.722 11 S 2.687 3.313 12 O -0.951 6.951 13 O -0.951 6.951 14 N -0.846 5.846 15 C -0.038 4.038 16 C -0.031 4.031 17 O -0.289 6.289 18 C 0.058 3.942 19 H 0.094 0.906 20 C -0.083 4.083 21 C -0.109 4.109 22 C -0.143 4.143 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.124 4.124 26 C -0.024 4.024 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.119 0.881 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.097 0.903 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 12.261 -18.208 -3.843 22.285 hybrid contribution 0.860 1.482 0.029 1.714 sum 13.121 -16.726 -3.814 21.597 Atomic orbital electron populations 1.69964 1.06121 1.27148 1.49533 1.25072 0.94978 0.99575 0.94862 0.86412 0.79914 0.83144 0.77813 1.19642 1.20756 1.20763 1.21023 0.93069 0.89698 1.52185 0.91999 1.18975 0.92672 0.90544 0.98910 1.30505 1.13704 1.18028 1.09966 1.05865 0.74838 0.76363 0.74211 1.93540 1.71067 1.85186 1.45329 1.93543 1.71113 1.85171 1.45266 1.58180 1.59136 1.56326 1.11001 1.22058 0.94402 1.01307 0.86064 1.23029 0.93568 0.98771 0.87738 1.87940 1.73042 1.54886 1.13051 1.21338 0.92960 0.96202 0.83699 0.90587 1.19503 1.00266 0.94117 0.94412 1.21020 0.97989 0.93808 0.98033 1.21172 0.99394 0.99925 0.93823 1.21194 0.99708 0.94292 0.98421 1.21111 0.99860 0.94663 0.98288 1.21049 0.97890 1.00169 0.93276 1.22093 0.92733 1.01461 0.86151 0.92535 0.94818 0.94831 0.86263 0.86326 0.88072 0.90459 0.92188 0.87511 0.85504 0.86039 0.86146 0.85811 0.85579 0.90300 0.88044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.17 9.11 -34.44 -0.31 -14.48 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 10 C -0.59 -11.00 6.12 37.16 0.23 -10.77 16 11 S 2.59 46.32 5.42 -107.50 -0.58 45.74 16 12 O -0.96 -19.61 16.81 -57.54 -0.97 -20.58 16 13 O -0.96 -19.80 16.81 -57.54 -0.97 -20.77 16 14 N -1.01 -13.83 3.27 -112.82 -0.37 -14.20 16 15 C 0.09 0.98 6.50 -3.53 -0.02 0.96 16 16 C 0.05 0.45 6.98 37.31 0.26 0.71 16 17 O -0.37 -4.18 9.70 -35.23 -0.34 -4.52 16 18 C 0.12 1.31 3.00 -27.51 -0.08 1.23 16 19 H 0.08 0.82 8.00 -51.93 -0.42 0.40 16 20 C -0.08 -0.89 4.98 -104.62 -0.52 -1.41 16 21 C -0.09 -0.91 9.35 -39.58 -0.37 -1.28 16 22 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 23 C -0.12 -1.00 10.05 -39.59 -0.40 -1.39 16 24 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 25 C -0.11 -1.05 9.67 -39.58 -0.38 -1.44 16 26 C 0.10 1.26 5.80 -3.31 -0.02 1.24 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.12 1.98 8.14 -51.92 -0.42 1.55 16 31 H 0.12 1.98 8.14 -51.93 -0.42 1.56 16 32 H 0.10 1.11 7.23 -51.93 -0.38 0.74 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.13 1.22 7.77 -52.49 -0.41 0.81 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.13 1.11 8.04 -52.49 -0.42 0.69 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.10 1.28 7.22 -51.93 -0.37 0.90 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -34.72 361.84 -10.90 -45.62 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.19 Total: 0.34 kcal Atomic # 6 Polarization: -24.87 SS G_CDS: -2.65 Total: -27.53 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.37 Total: -39.68 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -2.28 Total: -45.87 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 46.32 SS G_CDS: -0.58 Total: 45.74 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.72 -10.90 -45.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111327041.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.078 kcal (2) G-P(sol) polarization free energy of solvation -34.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds