Wall clock time and date at job start Tue Mar 31 2020 14:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99834 * 2 1 4 4 H 1.48498 * 109.47261 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47286 * 300.00185 * 3 2 1 6 6 H 1.48501 * 109.47023 * 60.00357 * 3 2 1 7 7 C 1.37873 * 120.00062 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00463 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47535 * 180.02562 * 9 7 2 11 11 S 1.81395 * 109.46986 * 180.02562 * 10 9 7 12 12 O 1.42105 * 110.54530 * 291.62628 * 11 10 9 13 13 O 1.42101 * 110.54333 * 68.37799 * 11 10 9 14 14 N 1.65599 * 104.44748 * 180.02562 * 11 10 9 15 15 C 1.47150 * 120.98183 * 90.00324 * 14 11 10 16 16 C 1.53299 * 108.38058 * 230.51125 * 15 14 11 17 17 O 1.42960 * 109.22644 * 307.69193 * 16 15 14 18 18 C 1.42964 * 114.16060 * 62.58360 * 17 16 15 19 19 H 1.08994 * 109.51588 * 57.39367 * 18 17 16 20 20 C 1.50700 * 109.51490 * 177.49698 * 18 17 16 21 21 C 1.38235 * 119.99739 * 39.72330 * 20 18 17 22 22 C 1.38238 * 119.99959 * 179.81475 * 21 20 18 23 23 C 1.38239 * 119.99702 * 0.41960 * 22 21 20 24 24 C 1.38227 * 120.00127 * 359.81079 * 23 22 21 25 25 C 1.38230 * 120.00149 * 0.02562 * 24 23 22 26 26 C 1.47153 * 120.98277 * 269.71800 * 14 11 10 27 27 H 0.96996 * 119.99792 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46657 * 60.00257 * 9 7 2 29 29 H 1.09005 * 109.47061 * 300.00589 * 9 7 2 30 30 H 1.09003 * 109.46593 * 60.00142 * 10 9 7 31 31 H 1.08994 * 109.46870 * 300.00510 * 10 9 7 32 32 H 1.08993 * 109.68420 * 350.22934 * 15 14 11 33 33 H 1.09002 * 109.68530 * 110.75655 * 15 14 11 34 34 H 1.08994 * 109.51504 * 67.62523 * 16 15 14 35 35 H 1.09002 * 109.50902 * 187.72157 * 16 15 14 36 36 H 1.07999 * 120.00278 * 359.97438 * 21 20 18 37 37 H 1.07997 * 119.99951 * 180.21278 * 22 21 20 38 38 H 1.07999 * 119.99741 * 179.79572 * 23 22 21 39 39 H 1.08000 * 120.00158 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.00237 * 179.97438 * 25 24 23 41 41 H 1.09000 * 109.68152 * 249.21175 * 26 14 11 42 42 H 1.09000 * 109.68018 * 9.76266 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 16 1.3385 -5.2330 -0.0013 12 8 0.6640 -5.4200 1.2354 13 8 0.6649 -5.4193 -1.2386 14 7 2.5206 -6.3926 -0.0005 15 6 3.0604 -6.9232 1.2614 16 6 4.5905 -6.8513 1.2008 17 8 5.0443 -7.4826 0.0011 18 6 4.5920 -6.8515 -1.1994 19 1 4.9087 -5.8086 -1.2041 20 6 5.1782 -7.5609 -2.3927 21 6 5.2785 -8.9396 -2.3966 22 6 5.8127 -9.5907 -3.4929 23 6 6.2546 -8.8624 -4.5816 24 6 6.1587 -7.4835 -4.5757 25 6 5.6214 -6.8327 -3.4809 26 6 3.0580 -6.9274 -1.2617 27 1 -0.4850 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8897 30 1 2.8720 -3.6043 0.8895 31 1 2.8721 -3.6042 -0.8904 32 1 2.6977 -6.3241 2.0965 33 1 2.7458 -7.9590 1.3886 34 1 4.9065 -5.8082 1.2053 35 1 5.0135 -7.3636 2.0650 36 1 4.9371 -9.5084 -1.5443 37 1 5.8878 -10.6680 -3.4974 38 1 6.6749 -9.3708 -5.4367 39 1 6.5043 -6.9144 -5.4261 40 1 5.5468 -5.7553 -3.4761 41 1 2.7436 -7.9638 -1.3845 42 1 2.6934 -6.3312 -2.0982 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111327041.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:26 Heat of formation + Delta-G solvation = -115.080428 kcal Electronic energy + Delta-G solvation = -25695.558644 eV Core-core repulsion = 21959.656336 eV Total energy + Delta-G solvation = -3735.902309 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.92138 -39.38209 -38.30613 -37.10958 -35.95046 -35.83151 -33.85721 -33.15578 -31.75663 -30.62559 -27.88676 -27.57935 -25.44510 -23.90087 -23.46172 -22.79882 -21.58325 -20.03000 -19.24849 -18.46552 -17.84383 -17.62844 -17.17533 -17.15408 -16.56504 -16.34246 -16.30425 -15.91464 -15.25458 -15.22416 -15.12117 -15.02298 -14.49463 -14.19210 -13.86655 -13.76396 -13.51936 -13.38275 -13.27967 -13.25892 -12.97144 -12.84160 -12.81197 -12.56872 -12.29229 -12.15425 -11.98700 -11.91091 -11.85896 -11.51301 -11.43034 -10.94914 -10.67012 -10.02626 -9.77720 -9.55087 -8.27474 -6.41651 -0.82147 0.39390 0.54456 1.40693 1.40983 1.54222 1.59645 2.36922 2.64187 2.77856 2.92333 3.06076 3.09096 3.52959 3.77377 3.78756 3.96217 4.01326 4.05611 4.17607 4.20316 4.23213 4.28990 4.34360 4.40290 4.64812 4.66278 4.69663 4.71551 4.80799 4.95050 4.99269 5.09292 5.21016 5.23121 5.24408 5.42160 5.59344 5.65213 5.66584 5.66812 6.03953 6.12101 6.16716 6.72161 7.28851 8.84997 Molecular weight = 325.12amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.003454 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.025568 B = 8104.087451 C = 9085.146485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.974 3.026 4 H -0.255 1.255 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.021 3.979 10 C -0.585 4.585 11 S 2.610 3.390 12 O -0.989 6.989 13 O -0.992 6.992 14 N -1.001 6.001 15 C 0.078 3.922 16 C 0.047 3.953 17 O -0.377 6.377 18 C 0.123 3.877 19 H 0.080 0.920 20 C -0.099 4.099 21 C -0.103 4.103 22 C -0.130 4.130 23 C -0.121 4.121 24 C -0.128 4.128 25 C -0.120 4.120 26 C 0.097 3.903 27 H 0.267 0.733 28 H 0.006 0.994 29 H 0.007 0.993 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.136 0.864 36 H 0.127 0.873 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.132 0.868 41 H 0.084 0.916 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.997 -18.567 -4.112 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.797 3.203 4 H -0.178 1.178 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.576 4.576 8 H 0.095 0.905 9 C -0.018 4.018 10 C -0.717 4.717 11 S 2.709 3.291 12 O -0.979 6.979 13 O -0.982 6.982 14 N -0.840 5.840 15 C -0.046 4.046 16 C -0.031 4.031 17 O -0.296 6.296 18 C 0.063 3.937 19 H 0.098 0.902 20 C -0.100 4.100 21 C -0.121 4.121 22 C -0.148 4.148 23 C -0.139 4.139 24 C -0.146 4.146 25 C -0.138 4.138 26 C -0.028 4.028 27 H 0.076 0.924 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.162 0.838 31 H 0.159 0.841 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.084 0.916 35 H 0.154 0.846 36 H 0.145 0.855 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.160 0.840 40 H 0.150 0.850 41 H 0.103 0.897 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.000 -18.843 -4.094 24.430 hybrid contribution 0.032 1.554 0.091 1.557 sum 15.032 -17.289 -4.003 23.257 Atomic orbital electron populations 1.70108 1.08083 1.28289 1.50895 1.26116 0.95845 1.03884 0.94374 0.85266 0.79201 0.78008 0.77794 1.17847 1.20403 1.20388 1.21527 0.93984 0.90650 1.51450 0.90534 1.18825 0.93562 0.93037 0.96367 1.30382 1.12755 1.16278 1.12307 1.04898 0.74938 0.76371 0.72855 1.93496 1.72360 1.85641 1.46397 1.93494 1.72537 1.85656 1.46548 1.57788 1.58529 1.54932 1.12717 1.22377 0.95732 1.01799 0.84724 1.23199 0.92117 0.99621 0.88132 1.87945 1.72985 1.55239 1.13400 1.21275 0.91650 0.96581 0.84164 0.90245 1.19566 1.01264 0.94563 0.94565 1.21147 0.98551 0.93726 0.98688 1.21465 0.98750 1.01106 0.93467 1.21539 0.99020 0.94286 0.99014 1.21415 0.99427 0.95255 0.98516 1.21251 0.98316 1.00698 0.93584 1.22268 0.93912 1.01468 0.85164 0.92377 0.97592 0.97476 0.83819 0.84143 0.87840 0.89318 0.91649 0.84639 0.85471 0.84055 0.83793 0.84007 0.85004 0.89730 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 2 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 3 Si 0.97 42.76 29.54 68.60 2.03 44.79 16 4 H -0.25 -10.39 7.11 99.48 0.71 -9.69 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.54 -29.34 9.11 25.60 0.23 -29.11 16 8 H 0.08 3.85 7.74 -2.91 -0.02 3.82 16 9 C 0.02 1.09 4.98 29.85 0.15 1.24 16 10 C -0.58 -21.67 6.12 71.98 0.44 -21.23 16 11 S 2.61 94.08 5.42 -56.49 -0.31 93.77 16 12 O -0.99 -40.87 16.81 -127.65 -2.15 -43.02 16 13 O -0.99 -41.83 16.81 -127.65 -2.15 -43.97 16 14 N -1.00 -26.44 3.27 -510.86 -1.67 -28.10 16 15 C 0.08 1.62 6.50 86.36 0.56 2.18 16 16 C 0.05 0.79 6.98 72.08 0.50 1.29 16 17 O -0.38 -7.73 9.70 -148.98 -1.45 -9.18 16 18 C 0.12 2.58 3.00 30.09 0.09 2.67 16 19 H 0.08 1.59 8.00 -2.39 -0.02 1.57 16 20 C -0.10 -2.01 4.98 -19.87 -0.10 -2.11 16 21 C -0.10 -1.94 9.35 22.27 0.21 -1.73 16 22 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 23 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 24 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 25 C -0.12 -2.26 9.67 22.27 0.22 -2.04 16 26 C 0.10 2.33 5.80 86.49 0.50 2.83 16 27 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 28 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 31 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 32 H 0.10 2.12 7.23 -2.39 -0.02 2.10 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.14 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.13 2.29 7.77 -2.91 -0.02 2.27 16 37 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.14 1.36 8.06 -2.91 -0.02 1.33 16 39 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.13 2.18 8.04 -2.91 -0.02 2.16 16 41 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.10 2.40 7.22 -2.39 -0.02 2.38 16 Total: -1.00 -75.73 361.84 -0.46 -76.20 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 1.00 Total: 16.64 kcal Atomic # 6 Polarization: -54.88 SS G_CDS: 3.94 Total: -50.94 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -1.38 Total: -84.28 kcal Atomic # 8 Polarization: -90.44 SS G_CDS: -5.74 Total: -96.17 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 16 Polarization: 94.08 SS G_CDS: -0.31 Total: 93.77 kcal Total: -75.73 -0.46 -76.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111327041.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.885 kcal (2) G-P(sol) polarization free energy of solvation -75.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds