Wall clock time and date at job start Tue Mar 31 2020 14:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47563 * 2 1 4 4 C 1.50707 * 109.47065 * 119.99474 * 2 1 3 5 5 H 1.07995 * 119.99880 * 119.99726 * 4 2 1 6 6 C 1.37881 * 119.99893 * 300.00244 * 4 2 1 7 7 N 1.31516 * 119.99925 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00037 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47350 * 59.99889 * 8 6 4 10 10 H 1.48503 * 109.47273 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47287 * 299.99882 * 8 6 4 12 12 O 1.45199 * 109.47299 * 239.99136 * 2 1 3 13 13 C 1.34657 * 116.99949 * 90.00557 * 12 2 1 14 14 O 1.21404 * 119.99459 * 359.97438 * 13 12 2 15 15 C 1.48286 * 120.00000 * 180.02562 * 13 12 2 16 16 N 1.33142 * 120.52152 * 359.97182 * 15 13 12 17 17 C 1.32207 * 120.66961 * 180.02562 * 16 15 13 18 18 N 1.38496 * 119.11096 * 180.02562 * 17 16 15 19 19 C 1.48531 * 111.00033 * 62.60505 * 18 17 16 20 20 C 1.54935 * 103.22458 * 159.72110 * 19 18 17 21 21 C 1.54600 * 102.92268 * 322.58403 * 20 19 18 22 22 C 1.47904 * 110.99776 * 180.02562 * 18 17 16 23 23 N 1.32601 * 121.77419 * 359.97438 * 17 16 15 24 24 C 1.32068 * 120.99148 * 359.77299 * 23 17 16 25 25 C 1.39006 * 119.22327 * 0.48233 * 24 23 17 26 26 Cl 1.73599 * 120.81285 * 179.78803 * 25 24 23 27 27 H 1.09001 * 109.46851 * 60.00394 * 1 2 3 28 28 H 1.09003 * 109.47308 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47376 * 300.00632 * 1 2 3 30 30 H 0.96995 * 120.00104 * 179.97438 * 7 6 4 31 31 H 1.09002 * 110.66778 * 278.15403 * 19 18 17 32 32 H 1.09002 * 110.66913 * 41.28426 * 19 18 17 33 33 H 1.09000 * 110.72152 * 204.23084 * 20 19 18 34 34 H 1.08998 * 110.87800 * 81.01776 * 20 19 18 35 35 H 1.08999 * 110.30942 * 263.04292 * 21 20 19 36 36 H 1.08994 * 110.30476 * 140.87760 * 21 20 19 37 37 H 1.09000 * 109.91926 * 333.50988 * 22 18 17 38 38 H 1.09003 * 109.91700 * 94.80317 * 22 18 17 39 39 H 1.08000 * 120.39357 * 180.26254 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3212 -1.1200 4.0081 9 1 3.8062 -1.1206 4.0084 10 1 1.8267 -0.4194 5.2206 11 1 1.8256 -2.5198 4.0081 12 8 2.0140 -0.6846 -1.1854 13 6 2.2179 0.0661 -2.2845 14 8 1.9971 1.2595 -2.2539 15 6 2.7110 -0.5650 -3.5325 16 7 2.9561 -1.8729 -3.5777 17 6 3.3963 -2.4386 -4.6886 18 7 3.6401 -3.8018 -4.6997 19 6 2.3925 -4.5678 -4.4489 20 6 2.7223 -5.9751 -5.0067 21 6 3.5696 -5.6600 -6.2609 22 6 4.1248 -4.2428 -6.0257 23 7 3.6096 -1.7360 -5.7928 24 6 3.3843 -0.4351 -5.8252 25 6 2.9260 0.2031 -4.6784 26 17 2.6215 1.9122 -4.6733 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.7087 1.1617 3.4843 31 1 2.1796 -4.6174 -3.3810 32 1 1.5549 -4.1264 -4.9890 33 1 1.8100 -6.5049 -5.2807 34 1 3.3006 -6.5530 -4.2857 35 1 2.9449 -5.6785 -7.1539 36 1 4.3866 -6.3753 -6.3549 37 1 3.7581 -3.5673 -6.7986 38 1 5.2146 -4.2643 -6.0343 39 1 3.5573 0.1271 -6.7310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113691172.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:56 Heat of formation + Delta-G solvation = -9.081022 kcal Electronic energy + Delta-G solvation = -25151.461142 eV Core-core repulsion = 21314.571262 eV Total energy + Delta-G solvation = -3836.889879 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.65911 -39.61452 -38.70334 -36.70819 -35.80392 -34.25274 -33.23774 -33.13308 -29.91781 -29.62624 -29.24726 -26.12498 -25.30476 -24.26268 -22.67137 -21.44801 -21.10223 -20.01258 -18.35928 -18.13464 -16.83647 -16.55975 -16.29776 -16.14336 -15.71874 -15.47962 -14.84008 -14.53881 -14.39779 -14.15609 -13.45182 -13.06177 -12.96405 -12.60043 -12.28954 -12.05833 -11.97686 -11.88283 -11.53513 -11.48806 -11.38975 -11.30499 -11.09040 -11.01162 -10.83064 -10.81280 -10.39222 -10.29694 -10.22489 -9.91366 -9.58167 -9.23479 -8.93494 -8.59410 -8.48625 -6.18020 -4.24525 0.19919 0.58788 1.87804 2.68265 2.86289 3.12833 3.28664 3.31765 3.36775 3.57241 3.69427 4.15892 4.29371 4.35743 4.44448 4.48483 4.67527 4.80014 4.99891 5.14727 5.15403 5.28893 5.49198 5.51577 5.59793 5.67403 5.75935 5.79288 5.86427 6.22692 6.29392 6.57427 6.79181 6.85358 6.86733 7.03718 7.53432 7.68277 7.71122 7.87300 8.10945 8.49155 8.85152 9.40442 10.89533 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.004001 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.181485 B = 6996.810699 C = 8992.497329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.050 0.950 4 C -0.520 4.520 5 H 0.070 0.930 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.913 3.087 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.273 1.273 12 O -0.325 6.325 13 C 0.502 3.498 14 O -0.478 6.478 15 C 0.197 3.803 16 N -0.458 5.458 17 C 0.481 3.519 18 N -0.441 5.441 19 C 0.051 3.949 20 C -0.124 4.124 21 C -0.132 4.132 22 C 0.037 3.963 23 N -0.526 5.526 24 C 0.186 3.814 25 C -0.133 4.133 26 Cl -0.001 7.001 27 H 0.016 0.984 28 H 0.038 0.962 29 H 0.101 0.899 30 H 0.267 0.733 31 H 0.105 0.895 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.499 -8.238 -20.142 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.558 4.558 5 H 0.088 0.912 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.740 3.260 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.239 6.239 13 C 0.342 3.658 14 O -0.364 6.364 15 C 0.048 3.952 16 N -0.177 5.177 17 C 0.125 3.875 18 N -0.162 5.162 19 C -0.075 4.075 20 C -0.162 4.162 21 C -0.170 4.170 22 C -0.090 4.090 23 N -0.246 5.246 24 C 0.016 3.984 25 C -0.167 4.167 26 Cl 0.028 6.972 27 H 0.035 0.965 28 H 0.057 0.943 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.848 -8.748 -19.450 21.671 hybrid contribution -0.286 0.971 0.364 1.076 sum 3.562 -7.777 -19.086 20.915 Atomic orbital electron populations 1.22173 0.97264 1.00299 1.01510 1.20801 0.91571 0.94029 0.77420 0.93261 1.20978 1.32573 1.13585 0.88642 0.91150 1.24870 0.94897 0.95086 0.99011 1.69883 1.36052 1.22528 1.24332 0.86310 0.79267 0.79558 0.80883 1.19950 1.21044 1.19875 1.86673 1.74524 1.42430 1.20275 1.20324 0.76353 0.84995 0.84152 1.90886 1.46877 1.14867 1.83809 1.20772 0.93493 0.88436 0.92542 1.68295 1.13136 1.10058 1.26251 1.21266 0.89408 0.92661 0.84120 1.61327 1.26906 0.98052 1.29883 1.23335 0.88072 0.92334 1.03754 1.22544 1.00461 0.95871 0.97341 1.22463 1.00049 0.96145 0.98369 1.23015 1.01495 0.96015 0.88509 1.68288 1.20521 1.07848 1.27952 1.23174 0.89338 0.89282 0.96561 1.22694 1.06777 0.90314 0.96868 1.98435 1.93595 1.06765 1.98416 0.96463 0.94277 0.88036 0.92320 0.87688 0.92676 0.90147 0.89951 0.90982 0.90432 0.89671 0.89508 0.79673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.33 37.16 0.35 -3.58 16 2 C 0.21 5.79 2.56 -27.88 -0.07 5.71 16 3 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 4 C -0.52 -14.76 8.90 -34.44 -0.31 -15.06 16 5 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.26 11.32 55.43 0.63 -24.63 16 8 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 O -0.32 -8.07 9.72 -40.38 -0.39 -8.46 16 13 C 0.50 11.04 7.94 34.86 0.28 11.32 16 14 O -0.48 -10.95 13.38 -19.19 -0.26 -11.20 16 15 C 0.20 3.60 6.79 -82.65 -0.56 3.04 16 16 N -0.46 -8.18 10.02 -10.49 -0.11 -8.28 16 17 C 0.48 7.16 6.98 -322.90 -2.25 4.91 16 18 N -0.44 -5.67 5.35 -171.43 -0.92 -6.59 16 19 C 0.05 0.56 6.31 -1.90 -0.01 0.55 16 20 C -0.12 -0.97 7.06 -24.87 -0.18 -1.14 16 21 C -0.13 -0.93 6.93 -25.36 -0.18 -1.11 16 22 C 0.04 0.35 6.34 -2.74 -0.02 0.33 16 23 N -0.53 -6.74 8.12 -13.89 -0.11 -6.85 16 24 C 0.19 2.16 11.13 -17.17 -0.19 1.97 16 25 C -0.13 -1.96 6.40 -38.78 -0.25 -2.21 16 26 Cl 0.00 -0.02 26.23 -51.86 -1.36 -1.38 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.10 2.73 6.07 -51.93 -0.32 2.42 16 30 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.05 0.60 7.99 -51.93 -0.42 0.19 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.83 6.46 -51.93 -0.34 0.50 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.19 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 343.95 15.07 5.18 5.18 Total: -1.00 -31.26 343.95 -10.63 -41.89 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -4.79 Total: -2.32 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -3.49 Total: 6.38 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: -0.51 Total: -46.36 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.65 Total: -19.66 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.36 Total: -1.38 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.26 -10.63 -41.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113691172.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.811 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds