Wall clock time and date at job start Tue Mar 31 2020 14:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47563 * 2 1 4 4 C 1.50707 * 109.47065 * 119.99474 * 2 1 3 5 5 H 1.07995 * 119.99880 * 119.99726 * 4 2 1 6 6 C 1.37881 * 119.99893 * 300.00244 * 4 2 1 7 7 N 1.31516 * 119.99925 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00037 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47350 * 59.99889 * 8 6 4 10 10 H 1.48503 * 109.47273 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47287 * 299.99882 * 8 6 4 12 12 O 1.45199 * 109.47299 * 239.99136 * 2 1 3 13 13 C 1.34657 * 116.99949 * 90.00557 * 12 2 1 14 14 O 1.21404 * 119.99459 * 359.97438 * 13 12 2 15 15 C 1.48286 * 120.00000 * 180.02562 * 13 12 2 16 16 N 1.33142 * 120.52152 * 359.97182 * 15 13 12 17 17 C 1.32207 * 120.66961 * 180.02562 * 16 15 13 18 18 N 1.38496 * 119.11096 * 180.02562 * 17 16 15 19 19 C 1.48531 * 111.00033 * 62.60505 * 18 17 16 20 20 C 1.54935 * 103.22458 * 159.72110 * 19 18 17 21 21 C 1.54600 * 102.92268 * 322.58403 * 20 19 18 22 22 C 1.47904 * 110.99776 * 180.02562 * 18 17 16 23 23 N 1.32601 * 121.77419 * 359.97438 * 17 16 15 24 24 C 1.32068 * 120.99148 * 359.77299 * 23 17 16 25 25 C 1.39006 * 119.22327 * 0.48233 * 24 23 17 26 26 Cl 1.73599 * 120.81285 * 179.78803 * 25 24 23 27 27 H 1.09001 * 109.46851 * 60.00394 * 1 2 3 28 28 H 1.09003 * 109.47308 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47376 * 300.00632 * 1 2 3 30 30 H 0.96995 * 120.00104 * 179.97438 * 7 6 4 31 31 H 1.09002 * 110.66778 * 278.15403 * 19 18 17 32 32 H 1.09002 * 110.66913 * 41.28426 * 19 18 17 33 33 H 1.09000 * 110.72152 * 204.23084 * 20 19 18 34 34 H 1.08998 * 110.87800 * 81.01776 * 20 19 18 35 35 H 1.08999 * 110.30942 * 263.04292 * 21 20 19 36 36 H 1.08994 * 110.30476 * 140.87760 * 21 20 19 37 37 H 1.09000 * 109.91926 * 333.50988 * 22 18 17 38 38 H 1.09003 * 109.91700 * 94.80317 * 22 18 17 39 39 H 1.08000 * 120.39357 * 180.26254 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3212 -1.1200 4.0081 9 1 3.8062 -1.1206 4.0084 10 1 1.8267 -0.4194 5.2206 11 1 1.8256 -2.5198 4.0081 12 8 2.0140 -0.6846 -1.1854 13 6 2.2179 0.0661 -2.2845 14 8 1.9971 1.2595 -2.2539 15 6 2.7110 -0.5650 -3.5325 16 7 2.9561 -1.8729 -3.5777 17 6 3.3963 -2.4386 -4.6886 18 7 3.6401 -3.8018 -4.6997 19 6 2.3925 -4.5678 -4.4489 20 6 2.7223 -5.9751 -5.0067 21 6 3.5696 -5.6600 -6.2609 22 6 4.1248 -4.2428 -6.0257 23 7 3.6096 -1.7360 -5.7928 24 6 3.3843 -0.4351 -5.8252 25 6 2.9260 0.2031 -4.6784 26 17 2.6215 1.9122 -4.6733 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 0.7087 1.1617 3.4843 31 1 2.1796 -4.6174 -3.3810 32 1 1.5549 -4.1264 -4.9890 33 1 1.8100 -6.5049 -5.2807 34 1 3.3006 -6.5530 -4.2857 35 1 2.9449 -5.6785 -7.1539 36 1 4.3866 -6.3753 -6.3549 37 1 3.7581 -3.5673 -6.7986 38 1 5.2146 -4.2643 -6.0343 39 1 3.5573 0.1271 -6.7310 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113691172.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:55 Heat of formation + Delta-G solvation = -26.855501 kcal Electronic energy + Delta-G solvation = -25152.231901 eV Core-core repulsion = 21314.571262 eV Total energy + Delta-G solvation = -3837.660638 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.81142 -41.27297 -39.72302 -37.97082 -37.58363 -35.57517 -35.19367 -34.09420 -31.74000 -30.87886 -30.05470 -27.57333 -27.35482 -25.32470 -24.11766 -22.66982 -22.11568 -21.49718 -19.79128 -19.32946 -18.59390 -18.02923 -17.67814 -17.35024 -17.17140 -16.88715 -16.41524 -16.15360 -15.47236 -15.04725 -14.92800 -14.37515 -14.17520 -14.00772 -13.76171 -13.40746 -13.26951 -13.10916 -13.07342 -12.89354 -12.86552 -12.70216 -12.42460 -12.32392 -12.23318 -12.16577 -12.13051 -11.71149 -11.64116 -11.43413 -11.09226 -11.01870 -10.61768 -10.48488 -9.61947 -8.30553 -6.47120 -1.09595 -0.49376 0.70991 1.20560 1.36393 1.43932 1.45502 1.55113 1.92880 2.27980 2.36594 2.64030 2.99977 3.08917 3.31848 3.37245 3.62025 3.75943 4.02826 4.14789 4.26524 4.42898 4.47074 4.48640 4.75031 4.77260 4.80387 4.85939 4.94265 4.96991 5.04343 5.12724 5.18524 5.22103 5.42929 5.48864 5.56383 5.75578 5.80353 5.98464 6.47732 6.60613 6.78324 7.23273 8.77070 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.004001 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.181485 B = 6996.810699 C = 8992.497329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.217 3.783 3 H 0.017 0.983 4 C -0.550 4.550 5 H 0.063 0.937 6 C 0.021 3.979 7 N -0.914 5.914 8 Si 0.981 3.019 9 H -0.270 1.270 10 H -0.273 1.273 11 H -0.264 1.264 12 O -0.339 6.339 13 C 0.497 3.503 14 O -0.494 6.494 15 C 0.172 3.828 16 N -0.494 5.494 17 C 0.479 3.521 18 N -0.458 5.458 19 C 0.046 3.954 20 C -0.116 4.116 21 C -0.123 4.123 22 C 0.034 3.966 23 N -0.512 5.512 24 C 0.213 3.787 25 C -0.130 4.130 26 Cl 0.000 7.000 27 H 0.026 0.974 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.272 0.728 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.257 -9.733 -22.060 24.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.164 3.836 3 H 0.034 0.966 4 C -0.588 4.588 5 H 0.081 0.919 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.804 3.196 9 H -0.195 1.195 10 H -0.198 1.198 11 H -0.189 1.189 12 O -0.254 6.254 13 C 0.338 3.662 14 O -0.382 6.382 15 C 0.024 3.976 16 N -0.215 5.215 17 C 0.123 3.877 18 N -0.178 5.178 19 C -0.079 4.079 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.092 4.092 23 N -0.231 5.231 24 C 0.042 3.958 25 C -0.164 4.164 26 Cl 0.029 6.971 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 4.603 -10.263 -21.386 24.164 hybrid contribution -0.476 1.452 0.836 1.741 sum 4.127 -8.811 -20.551 22.738 Atomic orbital electron populations 1.21984 0.96318 1.00409 1.01143 1.20527 0.92292 0.92342 0.78442 0.96565 1.21208 1.33667 1.13967 0.89927 0.91926 1.25769 0.94616 0.95635 1.01875 1.69988 1.36336 1.23428 1.25408 0.85260 0.78743 0.78694 0.76888 1.19525 1.19817 1.18907 1.86655 1.75213 1.42828 1.20748 1.20998 0.75657 0.84997 0.84527 1.90853 1.47607 1.15491 1.84223 1.20295 0.96141 0.89387 0.91728 1.68135 1.14998 1.10115 1.28277 1.21536 0.88708 0.93648 0.83775 1.61356 1.27466 0.97194 1.31825 1.23378 0.87598 0.94260 1.02642 1.22551 1.01587 0.93708 0.97579 1.22471 1.00567 0.94685 0.98405 1.23168 1.01728 0.97557 0.86729 1.68476 1.19882 1.08167 1.26606 1.24011 0.86244 0.88785 0.96768 1.22822 1.06734 0.90176 0.96662 1.98437 1.93574 1.06707 1.98387 0.95466 0.93790 0.89600 0.91824 0.89989 0.92779 0.88117 0.89999 0.89278 0.88809 0.89559 0.89206 0.74547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.40 9.33 71.98 0.67 -6.73 16 2 C 0.22 12.28 2.56 29.85 0.08 12.35 16 3 H 0.02 1.02 7.16 -2.39 -0.02 1.01 16 4 C -0.55 -32.27 8.90 25.60 0.23 -32.04 16 5 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 6 C 0.02 1.18 5.30 84.66 0.45 1.63 16 7 N -0.91 -52.74 11.32 21.45 0.24 -52.50 16 8 Si 0.98 43.74 29.54 68.60 2.03 45.76 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 12 O -0.34 -17.73 9.72 -55.66 -0.54 -18.27 16 13 C 0.50 22.81 7.94 70.50 0.56 23.37 16 14 O -0.49 -23.59 13.38 20.15 0.27 -23.32 16 15 C 0.17 6.40 6.79 41.95 0.28 6.69 16 16 N -0.49 -18.02 10.02 -187.10 -1.87 -19.90 16 17 C 0.48 13.92 6.98 261.52 1.83 15.75 16 18 N -0.46 -11.38 5.35 -696.27 -3.73 -15.11 16 19 C 0.05 1.01 6.31 86.65 0.55 1.55 16 20 C -0.12 -1.57 7.06 31.80 0.22 -1.35 16 21 C -0.12 -1.36 6.93 31.48 0.22 -1.14 16 22 C 0.03 0.58 6.34 86.45 0.55 1.12 16 23 N -0.51 -11.93 8.12 -197.86 -1.61 -13.54 16 24 C 0.21 4.32 11.13 84.84 0.94 5.27 16 25 C -0.13 -3.71 6.40 22.79 0.15 -3.56 16 26 Cl 0.00 0.00 26.23 -2.72 -0.07 -0.07 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.09 4.78 6.07 -2.39 -0.01 4.76 16 30 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.05 1.16 7.99 -2.39 -0.02 1.14 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.09 1.44 6.46 -2.39 -0.02 1.43 16 38 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.24 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -70.54 343.95 2.52 -68.01 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 1.08 Total: 6.03 kcal Atomic # 6 Polarization: 16.19 SS G_CDS: 6.72 Total: 22.91 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -6.97 Total: -101.05 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -0.27 Total: -41.60 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.07 Total: -0.07 kcal Total: -70.54 2.52 -68.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113691172.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.157 kcal (2) G-P(sol) polarization free energy of solvation -70.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds