Wall clock time and date at job start Tue Mar 31 2020 14:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81392 * 103.00446 * 2 1 4 4 H 1.09000 * 109.47571 * 305.00399 * 3 2 1 5 5 C 1.53003 * 109.46850 * 65.00013 * 3 2 1 6 6 C 1.52999 * 109.47347 * 184.99741 * 3 2 1 7 7 C 1.50702 * 109.46851 * 65.00351 * 6 3 2 8 8 O 1.21296 * 120.00013 * 359.97438 * 7 6 3 9 9 N 1.34772 * 120.00160 * 180.02562 * 7 6 3 10 10 C 1.40140 * 120.00376 * 175.51918 * 9 7 6 11 11 C 1.38655 * 120.09674 * 34.67552 * 10 9 7 12 12 C 1.38244 * 120.01048 * 180.02562 * 11 10 9 13 13 C 1.38300 * 120.20765 * 0.02562 * 12 11 10 14 14 C 1.38195 * 120.20408 * 359.97091 * 13 12 11 15 15 C 1.38794 * 119.98561 * 359.75146 * 14 13 12 16 16 S 1.76201 * 120.10443 * 180.27409 * 15 14 13 17 17 C 1.81401 * 102.99858 * 0.27459 * 16 15 14 18 18 C 1.50701 * 109.46926 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99771 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00244 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99882 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99409 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47159 * 89.99968 * 22 20 18 24 24 H 1.48501 * 109.46487 * 209.99239 * 22 20 18 25 25 H 1.48500 * 109.47334 * 329.99479 * 22 20 18 26 26 H 1.09004 * 109.47027 * 300.00403 * 1 2 3 27 27 H 1.08998 * 109.46933 * 59.99576 * 1 2 3 28 28 H 1.08996 * 109.47572 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.47139 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47367 * 60.00249 * 5 3 2 31 31 H 1.08995 * 109.47557 * 300.00082 * 5 3 2 32 32 H 1.08998 * 109.47347 * 185.00336 * 6 3 2 33 33 H 1.08996 * 109.47187 * 305.00431 * 6 3 2 34 34 H 0.97005 * 119.99695 * 355.52386 * 9 7 6 35 35 H 1.08007 * 119.99229 * 359.97438 * 11 10 9 36 36 H 1.08000 * 119.89641 * 179.97438 * 12 11 10 37 37 H 1.08004 * 119.89793 * 179.97438 * 13 12 11 38 38 H 1.07991 * 120.00671 * 180.02562 * 14 13 12 39 39 H 1.08998 * 109.47121 * 299.99681 * 17 16 15 40 40 H 1.08993 * 109.47407 * 60.00010 * 17 16 15 41 41 H 0.97000 * 119.99058 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 1 1.7296 2.2541 -0.8417 5 6 1.7429 2.4014 1.3074 6 6 3.7371 1.9410 -0.1257 7 6 4.1920 1.4268 -1.4672 8 8 3.3840 0.9664 -2.2460 9 7 5.4967 1.4777 -1.8013 10 6 5.9335 0.9149 -3.0081 11 6 5.1209 0.9601 -4.1307 12 6 5.5533 0.4040 -5.3202 13 6 6.7956 -0.1991 -5.3952 14 6 7.6127 -0.2490 -4.2818 15 6 7.1891 0.3118 -3.0849 16 16 8.2313 0.2563 -1.6652 17 6 9.7057 -0.6069 -2.2749 18 6 10.7101 -0.7352 -1.1587 19 1 10.4838 -0.3376 -0.1804 20 6 11.9173 -1.3612 -1.3862 21 7 12.7936 -1.4735 -0.4120 22 14 12.3082 -2.0495 -3.0782 23 1 12.9782 -1.0056 -3.8947 24 1 13.2081 -3.2226 -2.9395 25 1 11.0491 -2.4675 -3.7455 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.9878 3.4637 1.3072 30 1 2.2355 1.9148 2.1492 31 1 0.6637 2.2778 1.3970 32 1 3.9904 2.9974 -0.0365 33 1 4.2339 1.3802 0.6659 34 1 6.1334 1.9038 -1.2063 35 1 4.1495 1.4292 -4.0756 36 1 4.9187 0.4399 -6.1933 37 1 7.1283 -0.6324 -6.3269 38 1 8.5823 -0.7204 -4.3441 39 1 9.4256 -1.5994 -2.6280 40 1 10.1454 -0.0401 -3.0954 41 1 13.6430 -1.9136 -0.5723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119548739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:04 Heat of formation + Delta-G solvation = -17.602490 kcal Electronic energy + Delta-G solvation = -22179.387196 eV Core-core repulsion = 18890.464719 eV Total energy + Delta-G solvation = -3288.922477 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.41821 -38.30725 -35.00436 -34.54592 -33.17974 -30.91899 -30.14317 -29.38992 -29.08398 -27.67807 -23.57078 -22.75254 -22.64063 -21.56300 -20.22409 -18.04319 -17.17184 -16.89620 -16.79069 -16.62616 -15.56550 -15.12268 -14.84452 -14.67689 -14.26365 -14.22835 -13.72347 -13.63330 -13.51409 -13.31090 -13.25288 -12.99207 -12.62367 -12.55095 -12.40472 -12.23702 -11.83872 -11.66999 -11.51996 -11.31688 -10.91396 -10.57752 -10.28421 -10.22111 -9.94806 -9.79188 -9.71036 -9.28542 -9.26664 -8.79632 -8.13542 -7.59457 -6.72126 -6.28599 -4.32681 1.43200 1.54054 1.59605 2.23382 2.43684 2.63014 3.08101 3.15113 3.22467 3.23675 3.40584 3.98998 4.22245 4.28835 4.42804 4.85714 4.89068 4.92842 4.98155 5.02771 5.11965 5.16680 5.23188 5.25047 5.31182 5.46561 5.49217 5.58847 5.71710 5.74141 5.78025 6.10157 6.39834 6.42307 6.45465 6.52362 6.64007 6.75385 7.19260 7.28119 7.44406 8.14657 8.16793 8.71088 9.26282 10.83058 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016077 B = 0.003067 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.251166 B = 9126.126819 C =10186.471485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.233 6.233 3 C -0.045 4.045 4 H 0.094 0.906 5 C -0.148 4.148 6 C -0.124 4.124 7 C 0.509 3.491 8 O -0.504 6.504 9 N -0.665 5.665 10 C 0.152 3.848 11 C -0.104 4.104 12 C -0.124 4.124 13 C -0.115 4.115 14 C -0.122 4.122 15 C -0.100 4.100 16 S -0.127 6.127 17 C 0.032 3.968 18 C -0.521 4.521 19 H 0.085 0.915 20 C 0.084 3.916 21 N -0.887 5.887 22 Si 0.876 3.124 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.264 1.264 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.412 0.588 35 H 0.138 0.862 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.128 0.872 39 H 0.043 0.957 40 H 0.038 0.962 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.616 8.337 -2.054 23.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.007 6.007 3 C -0.174 4.174 4 H 0.112 0.888 5 C -0.207 4.207 6 C -0.165 4.165 7 C 0.296 3.704 8 O -0.378 6.378 9 N -0.311 5.311 10 C 0.051 3.949 11 C -0.126 4.126 12 C -0.145 4.145 13 C -0.136 4.136 14 C -0.146 4.146 15 C -0.215 4.215 16 S 0.120 5.880 17 C -0.116 4.116 18 C -0.560 4.560 19 H 0.103 0.897 20 C -0.122 4.122 21 N -0.524 5.524 22 Si 0.702 3.298 23 H -0.197 1.197 24 H -0.206 1.206 25 H -0.189 1.189 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.249 0.751 35 H 0.156 0.844 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.146 0.854 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.457 7.462 -1.285 22.754 hybrid contribution 0.175 0.247 -1.825 1.850 sum -21.282 7.709 -3.110 22.848 Atomic orbital electron populations 1.23378 0.95295 1.06231 1.04467 1.87186 1.06164 1.09644 1.97702 1.22864 0.97487 0.95540 1.01519 0.88810 1.22114 1.01537 1.00948 0.96142 1.21537 0.94861 1.03987 0.96151 1.20591 0.81828 0.78839 0.89118 1.90735 1.52391 1.43371 1.51254 1.43494 1.09395 1.57513 1.20687 1.17141 0.93030 0.98747 0.85939 1.21094 1.00050 1.00741 0.90712 1.20939 0.96273 0.99940 0.97395 1.21013 0.94433 1.00067 0.98042 1.21127 1.00661 1.00917 0.91940 1.22001 0.98041 1.01891 0.99610 1.85169 1.15734 1.73493 1.13618 1.21724 0.92276 0.97122 1.00492 1.20389 0.98941 1.39848 0.96803 0.89705 1.24823 0.95409 0.94851 0.97095 1.69852 1.08034 1.42459 1.32024 0.86837 0.79060 0.79410 0.84497 1.19695 1.20607 1.18900 0.90866 0.90665 0.88338 0.91514 0.91004 0.92227 0.87207 0.87380 0.75089 0.84442 0.86113 0.86172 0.85388 0.93839 0.94338 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.45 101.05 1.06 0.03 16 2 S -0.23 -2.73 20.24 -107.50 -2.18 -4.91 16 3 C -0.04 -0.41 2.44 -26.73 -0.07 -0.47 16 4 H 0.09 0.90 7.96 -51.92 -0.41 0.48 16 5 C -0.15 -0.97 9.10 37.16 0.34 -0.63 16 6 C -0.12 -1.14 5.18 -27.88 -0.14 -1.28 16 7 C 0.51 6.68 7.39 -10.99 -0.08 6.60 16 8 O -0.50 -7.91 12.22 5.54 0.07 -7.85 16 9 N -0.67 -9.29 5.03 -9.71 -0.05 -9.33 16 10 C 0.15 2.50 6.32 -83.43 -0.53 1.97 16 11 C -0.10 -1.61 8.70 -39.43 -0.34 -1.95 16 12 C -0.12 -1.74 10.04 -39.56 -0.40 -2.14 16 13 C -0.12 -1.70 10.04 -39.57 -0.40 -2.10 16 14 C -0.12 -2.12 9.36 -39.39 -0.37 -2.48 16 15 C -0.10 -1.82 6.12 -38.90 -0.24 -2.06 16 16 S -0.13 -2.56 20.72 -107.50 -2.23 -4.79 16 17 C 0.03 0.74 3.16 36.01 0.11 0.85 16 18 C -0.52 -14.31 9.68 -34.44 -0.33 -14.64 16 19 H 0.09 2.53 7.96 -52.49 -0.42 2.12 16 20 C 0.08 2.32 5.47 -17.82 -0.10 2.23 16 21 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 22 Si 0.88 20.42 27.47 -169.99 -4.67 15.75 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 26 H 0.07 0.48 7.14 -51.92 -0.37 0.11 16 27 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.36 6.92 -51.93 -0.36 0.00 16 32 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.41 5.13 7.96 -40.82 -0.32 4.81 16 35 H 0.14 2.07 6.20 -52.48 -0.33 1.75 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 38 H 0.13 2.28 5.88 -52.49 -0.31 1.98 16 39 H 0.04 1.01 6.79 -51.92 -0.35 0.66 16 40 H 0.04 0.87 7.19 -51.93 -0.37 0.50 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 361.10 15.07 5.44 5.44 Total: -1.00 -31.69 361.10 -10.12 -41.81 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -5.79 Total: 5.28 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -1.48 Total: -16.08 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.72 Total: -34.65 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.07 Total: -7.85 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.67 Total: 15.75 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -4.40 Total: -9.69 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.69 -10.12 -41.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119548739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.203 kcal (2) G-P(sol) polarization free energy of solvation -31.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds