Wall clock time and date at job start Tue Mar 31 2020 14:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81392 * 103.00446 * 2 1 4 4 H 1.09000 * 109.47571 * 305.00399 * 3 2 1 5 5 C 1.53003 * 109.46850 * 65.00013 * 3 2 1 6 6 C 1.52999 * 109.47347 * 184.99741 * 3 2 1 7 7 C 1.50702 * 109.46851 * 65.00351 * 6 3 2 8 8 O 1.21296 * 120.00013 * 359.97438 * 7 6 3 9 9 N 1.34772 * 120.00160 * 180.02562 * 7 6 3 10 10 C 1.40140 * 120.00376 * 175.51918 * 9 7 6 11 11 C 1.38655 * 120.09674 * 34.67552 * 10 9 7 12 12 C 1.38244 * 120.01048 * 180.02562 * 11 10 9 13 13 C 1.38300 * 120.20765 * 0.02562 * 12 11 10 14 14 C 1.38195 * 120.20408 * 359.97091 * 13 12 11 15 15 C 1.38794 * 119.98561 * 359.75146 * 14 13 12 16 16 S 1.76201 * 120.10443 * 180.27409 * 15 14 13 17 17 C 1.81401 * 102.99858 * 0.27459 * 16 15 14 18 18 C 1.50701 * 109.46926 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99771 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00244 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99882 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99409 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47159 * 89.99968 * 22 20 18 24 24 H 1.48501 * 109.46487 * 209.99239 * 22 20 18 25 25 H 1.48500 * 109.47334 * 329.99479 * 22 20 18 26 26 H 1.09004 * 109.47027 * 300.00403 * 1 2 3 27 27 H 1.08998 * 109.46933 * 59.99576 * 1 2 3 28 28 H 1.08996 * 109.47572 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.47139 * 180.02562 * 5 3 2 30 30 H 1.09000 * 109.47367 * 60.00249 * 5 3 2 31 31 H 1.08995 * 109.47557 * 300.00082 * 5 3 2 32 32 H 1.08998 * 109.47347 * 185.00336 * 6 3 2 33 33 H 1.08996 * 109.47187 * 305.00431 * 6 3 2 34 34 H 0.97005 * 119.99695 * 355.52386 * 9 7 6 35 35 H 1.08007 * 119.99229 * 359.97438 * 11 10 9 36 36 H 1.08000 * 119.89641 * 179.97438 * 12 11 10 37 37 H 1.08004 * 119.89793 * 179.97438 * 13 12 11 38 38 H 1.07991 * 120.00671 * 180.02562 * 14 13 12 39 39 H 1.08998 * 109.47121 * 299.99681 * 17 16 15 40 40 H 1.08993 * 109.47407 * 60.00010 * 17 16 15 41 41 H 0.97000 * 119.99058 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7674 0.0000 4 1 1.7296 2.2541 -0.8417 5 6 1.7429 2.4014 1.3074 6 6 3.7371 1.9410 -0.1257 7 6 4.1920 1.4268 -1.4672 8 8 3.3840 0.9664 -2.2460 9 7 5.4967 1.4777 -1.8013 10 6 5.9335 0.9149 -3.0081 11 6 5.1209 0.9601 -4.1307 12 6 5.5533 0.4040 -5.3202 13 6 6.7956 -0.1991 -5.3952 14 6 7.6127 -0.2490 -4.2818 15 6 7.1891 0.3118 -3.0849 16 16 8.2313 0.2563 -1.6652 17 6 9.7057 -0.6069 -2.2749 18 6 10.7101 -0.7352 -1.1587 19 1 10.4838 -0.3376 -0.1804 20 6 11.9173 -1.3612 -1.3862 21 7 12.7936 -1.4735 -0.4120 22 14 12.3082 -2.0495 -3.0782 23 1 12.9782 -1.0056 -3.8947 24 1 13.2081 -3.2226 -2.9395 25 1 11.0491 -2.4675 -3.7455 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.9878 3.4637 1.3072 30 1 2.2355 1.9148 2.1492 31 1 0.6637 2.2778 1.3970 32 1 3.9904 2.9974 -0.0365 33 1 4.2339 1.3802 0.6659 34 1 6.1334 1.9038 -1.2063 35 1 4.1495 1.4292 -4.0756 36 1 4.9187 0.4399 -6.1933 37 1 7.1283 -0.6324 -6.3269 38 1 8.5823 -0.7204 -4.3441 39 1 9.4256 -1.5994 -2.6280 40 1 10.1454 -0.0401 -3.0954 41 1 13.6430 -1.9136 -0.5723 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119548739.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:04 Heat of formation + Delta-G solvation = -35.401416 kcal Electronic energy + Delta-G solvation = -22180.159015 eV Core-core repulsion = 18890.464719 eV Total energy + Delta-G solvation = -3289.694296 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.52205 -39.46476 -35.94665 -35.49499 -35.24926 -32.29791 -31.33652 -31.07499 -29.86833 -28.44767 -25.10059 -24.13418 -23.82356 -22.60653 -21.28706 -19.49062 -18.80948 -18.07718 -17.93099 -17.63878 -16.66190 -16.53227 -16.10729 -15.74240 -15.71535 -15.10634 -15.02092 -14.91983 -14.73393 -14.54173 -14.36801 -14.28492 -13.93778 -13.57948 -13.20069 -13.12282 -12.91930 -12.76833 -12.66496 -12.34639 -12.20807 -12.18165 -12.10098 -11.76189 -11.38734 -10.98638 -10.94014 -10.86380 -10.66728 -10.55313 -9.34821 -8.48833 -8.41611 -8.23063 -6.52238 0.21201 0.35040 0.69754 0.81121 1.32208 1.33781 1.43658 1.58461 1.72274 1.74046 2.07500 2.25912 2.77672 2.91607 3.51325 3.65100 3.88602 4.12685 4.19019 4.21757 4.33070 4.35369 4.39121 4.47301 4.51384 4.52692 4.53656 4.63601 4.63942 4.77438 4.87675 4.88897 4.99889 5.18499 5.24971 5.27553 5.30815 5.47894 5.55726 6.00699 6.01438 6.37926 6.51396 7.10109 7.11062 8.73692 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016077 B = 0.003067 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.251166 B = 9126.126819 C =10186.471485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.320 6.320 3 C -0.027 4.027 4 H 0.090 0.910 5 C -0.142 4.142 6 C -0.120 4.120 7 C 0.507 3.493 8 O -0.530 6.530 9 N -0.667 5.667 10 C 0.148 3.852 11 C -0.113 4.113 12 C -0.110 4.110 13 C -0.113 4.113 14 C -0.136 4.136 15 C -0.123 4.123 16 S -0.137 6.137 17 C 0.035 3.965 18 C -0.533 4.533 19 H 0.044 0.956 20 C 0.026 3.974 21 N -0.934 5.934 22 Si 0.945 3.055 23 H -0.259 1.259 24 H -0.276 1.276 25 H -0.246 1.246 26 H 0.092 0.908 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.146 0.854 33 H 0.110 0.890 34 H 0.417 0.583 35 H 0.141 0.859 36 H 0.156 0.844 37 H 0.152 0.848 38 H 0.120 0.880 39 H 0.044 0.956 40 H 0.047 0.953 41 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.499 9.145 -4.058 25.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 S -0.095 6.095 3 C -0.156 4.156 4 H 0.108 0.892 5 C -0.201 4.201 6 C -0.161 4.161 7 C 0.295 3.705 8 O -0.406 6.406 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.135 4.135 12 C -0.131 4.131 13 C -0.133 4.133 14 C -0.161 4.161 15 C -0.238 4.238 16 S 0.108 5.892 17 C -0.113 4.113 18 C -0.571 4.571 19 H 0.062 0.938 20 C -0.175 4.175 21 N -0.573 5.573 22 Si 0.767 3.233 23 H -0.183 1.183 24 H -0.202 1.202 25 H -0.170 1.170 26 H 0.111 0.889 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.164 0.836 33 H 0.129 0.871 34 H 0.255 0.745 35 H 0.159 0.841 36 H 0.174 0.826 37 H 0.169 0.831 38 H 0.138 0.862 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.368 8.289 -3.286 25.011 hybrid contribution 0.605 0.062 -1.192 1.338 sum -22.763 8.351 -4.478 24.657 Atomic orbital electron populations 1.23358 0.91670 1.06883 1.05540 1.87445 1.10442 1.13696 1.97911 1.22875 0.97142 0.92768 1.02839 0.89212 1.22080 1.01902 1.01806 0.94325 1.21654 0.95008 1.05893 0.93520 1.21288 0.81046 0.78005 0.90131 1.90711 1.52914 1.44519 1.52468 1.43615 1.10028 1.57399 1.20210 1.17352 0.92478 0.98255 0.87204 1.21288 1.00046 1.01160 0.90976 1.21378 0.96172 0.97662 0.97925 1.21334 0.94140 0.99566 0.98307 1.21257 1.00979 1.01189 0.92643 1.21950 0.98515 1.04410 0.98940 1.85009 1.15058 1.73711 1.15398 1.21467 0.92940 0.97746 0.99131 1.20575 1.00443 1.39600 0.96504 0.93809 1.25800 0.95066 0.95035 1.01603 1.69995 1.08799 1.43782 1.34691 0.85738 0.79564 0.78895 0.79107 1.18349 1.20170 1.16989 0.88932 0.90326 0.87959 0.89388 0.91219 0.91510 0.83638 0.87146 0.74504 0.84102 0.82639 0.83052 0.86191 0.93807 0.93497 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.45 113.37 1.19 -0.42 16 2 S -0.32 -7.41 20.24 -56.49 -1.14 -8.56 16 3 C -0.03 -0.45 2.44 30.59 0.07 -0.38 16 4 H 0.09 1.57 7.96 -2.39 -0.02 1.55 16 5 C -0.14 -1.50 9.10 71.98 0.66 -0.84 16 6 C -0.12 -2.02 5.18 29.85 0.15 -1.87 16 7 C 0.51 12.88 7.39 87.66 0.65 13.52 16 8 O -0.53 -16.36 12.22 -3.08 -0.04 -16.39 16 9 N -0.67 -18.26 5.03 -303.01 -1.52 -19.79 16 10 C 0.15 4.75 6.32 38.22 0.24 4.99 16 11 C -0.11 -3.28 8.70 22.37 0.19 -3.09 16 12 C -0.11 -2.76 10.04 22.29 0.22 -2.53 16 13 C -0.11 -3.01 10.04 22.27 0.22 -2.79 16 14 C -0.14 -4.55 9.36 22.39 0.21 -4.34 16 15 C -0.12 -4.42 6.12 22.71 0.14 -4.28 16 16 S -0.14 -5.62 20.72 -56.49 -1.17 -6.79 16 17 C 0.04 1.66 3.16 71.24 0.23 1.88 16 18 C -0.53 -30.25 9.68 25.60 0.25 -30.00 16 19 H 0.04 2.77 7.96 -2.91 -0.02 2.75 16 20 C 0.03 1.47 5.47 84.66 0.46 1.93 16 21 N -0.93 -56.61 13.96 21.45 0.30 -56.31 16 22 Si 0.95 41.97 27.47 68.60 1.88 43.85 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 25 H -0.25 -10.13 6.54 99.48 0.65 -9.48 16 26 H 0.09 1.02 7.14 -2.39 -0.02 1.00 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.62 6.92 -2.39 -0.02 0.61 16 32 H 0.15 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.42 10.30 7.96 -92.70 -0.74 9.56 16 35 H 0.14 4.02 6.20 -2.91 -0.02 4.00 16 36 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 37 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 38 H 0.12 4.14 5.88 -2.92 -0.02 4.12 16 39 H 0.04 2.04 6.79 -2.39 -0.02 2.02 16 40 H 0.05 2.11 7.19 -2.39 -0.02 2.09 16 41 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -71.52 361.10 3.44 -68.07 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.25 Total: 24.13 kcal Atomic # 6 Polarization: -33.10 SS G_CDS: 4.88 Total: -28.21 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -1.22 Total: -76.10 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.04 Total: -16.39 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.88 Total: 43.85 kcal Atomic # 16 Polarization: -13.04 SS G_CDS: -2.31 Total: -15.35 kcal Total: -71.52 3.44 -68.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119548739.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.673 kcal (2) G-P(sol) polarization free energy of solvation -71.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds