Wall clock time and date at job start Tue Mar 31 2020 14:06:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81399 * 1
3 3 C 1.81394 * 103.00374 * 2 1
4 4 H 1.08997 * 109.47605 * 55.00009 * 3 2 1
5 5 C 1.53004 * 109.47192 * 294.99841 * 3 2 1
6 6 C 1.53003 * 109.47136 * 175.00019 * 3 2 1
7 7 C 1.50698 * 109.46929 * 294.99716 * 6 3 2
8 8 O 1.21291 * 120.00422 * 0.02562 * 7 6 3
9 9 N 1.34779 * 119.99659 * 179.97438 * 7 6 3
10 10 C 1.40147 * 119.99800 * 185.52384 * 9 7 6
11 11 C 1.38646 * 120.09824 * 24.82423 * 10 9 7
12 12 C 1.38248 * 120.01163 * 180.02562 * 11 10 9
13 13 C 1.38302 * 120.20673 * 0.02562 * 12 11 10
14 14 C 1.38195 * 120.20051 * 359.97438 * 13 12 11
15 15 C 1.38785 * 119.98864 * 0.02562 * 14 13 12
16 16 S 1.76204 * 120.10527 * 180.02562 * 15 14 13
17 17 C 1.81404 * 103.00027 * 0.02562 * 16 15 14
18 18 C 1.50696 * 109.47166 * 180.02562 * 17 16 15
19 19 H 1.08000 * 119.99894 * 359.97438 * 18 17 16
20 20 C 1.37873 * 119.99693 * 180.02562 * 18 17 16
21 21 N 1.31511 * 120.00700 * 359.97438 * 20 18 17
22 22 Si 1.86804 * 119.99798 * 179.97438 * 20 18 17
23 23 H 1.48502 * 109.47386 * 59.99716 * 22 20 18
24 24 H 1.48497 * 109.47439 * 179.97438 * 22 20 18
25 25 H 1.48502 * 109.47347 * 299.99711 * 22 20 18
26 26 H 1.09004 * 109.47037 * 59.99665 * 1 2 3
27 27 H 1.08996 * 109.47688 * 180.02562 * 1 2 3
28 28 H 1.09000 * 109.46577 * 300.00727 * 1 2 3
29 29 H 1.08997 * 109.47032 * 180.02562 * 5 3 2
30 30 H 1.09007 * 109.46808 * 300.00584 * 5 3 2
31 31 H 1.08998 * 109.47050 * 60.00094 * 5 3 2
32 32 H 1.08998 * 109.46992 * 174.99507 * 6 3 2
33 33 H 1.09004 * 109.47323 * 54.99835 * 6 3 2
34 34 H 0.96998 * 120.00617 * 5.53570 * 9 7 6
35 35 H 1.08004 * 119.99322 * 0.04117 * 11 10 9
36 36 H 1.07997 * 119.89739 * 180.28219 * 12 11 10
37 37 H 1.08000 * 119.90068 * 179.97438 * 13 12 11
38 38 H 1.08006 * 120.00898 * 180.02562 * 14 13 12
39 39 H 1.08999 * 109.46846 * 299.99959 * 17 16 15
40 40 H 1.08999 * 109.46905 * 59.99928 * 17 16 15
41 41 H 0.96999 * 120.00355 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2222 1.7674 0.0000
4 1 1.7296 2.2541 0.8418
5 6 1.7429 2.4015 -1.3074
6 6 3.7371 1.9410 0.1257
7 6 4.1920 1.4268 1.4673
8 8 3.3841 0.9664 2.2460
9 7 5.4967 1.4777 1.8013
10 6 5.9369 0.8957 2.9978
11 6 5.2143 -0.1368 3.5758
12 6 5.6499 -0.7092 4.7564
13 6 6.8057 -0.2550 5.3651
14 6 7.5326 0.7737 4.7965
15 6 7.1029 1.3543 3.6114
16 16 8.0277 2.6656 2.8835
17 6 9.4129 2.8767 4.0357
18 6 10.3110 3.9825 3.5443
19 1 10.0726 4.5057 2.6300
20 6 11.4375 4.3255 4.2613
21 7 11.7281 3.6881 5.3743
22 14 12.5512 5.6959 3.6518
23 1 11.7791 6.9617 3.5695
24 1 13.6850 5.8688 4.5951
25 1 13.0747 5.3470 2.3066
26 1 -0.3633 0.5139 -0.8900
27 1 -0.3634 -1.0276 0.0005
28 1 -0.3632 0.5140 0.8900
29 1 1.9886 3.4635 -1.3076
30 1 2.2355 1.9148 -2.1492
31 1 0.6637 2.2779 -1.3970
32 1 3.9904 2.9974 0.0365
33 1 4.2341 1.3802 -0.6659
34 1 6.1311 1.9172 1.2137
35 1 4.3111 -0.4941 3.1035
36 1 5.0881 -1.5165 5.2026
37 1 7.1412 -0.7055 6.2875
38 1 8.4350 1.1258 5.2742
39 1 9.0284 3.1329 5.0229
40 1 9.9797 1.9476 4.0964
41 1 12.5209 3.9292 5.8785
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000119548848.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:06:07
Heat of formation + Delta-G solvation = -21.546385 kcal
Electronic energy + Delta-G solvation = -22068.147016 eV
Core-core repulsion = 18779.053519 eV
Total energy + Delta-G solvation = -3289.093497 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 325.091 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-40.40970 -38.19832 -34.98422 -34.52249 -33.28185 -30.72227 -30.09941 -29.10083
-28.61478 -27.64980 -23.68784 -22.96604 -22.61012 -21.58810 -20.14951 -17.99795
-17.01882 -16.92160 -16.60748 -16.24002 -15.58738 -15.03763 -15.01043 -14.57122
-14.32977 -14.02509 -13.94108 -13.61447 -13.40917 -13.07555 -12.98543 -12.93405
-12.57017 -12.39879 -12.26862 -12.14046 -11.74735 -11.68303 -11.53513 -11.21715
-10.95062 -10.80202 -10.35723 -10.07116 -9.98690 -9.73969 -9.60365 -9.20578
-9.16865 -8.65872 -7.95619 -7.65310 -6.58989 -6.29743 -4.35912 1.50086
1.53656 1.73135 2.37252 2.40352 2.70046 3.10437 3.21491 3.25618
3.28537 3.59291 4.13719 4.26389 4.27802 4.43848 4.84842 4.88562
4.90459 4.94984 5.07685 5.13475 5.22233 5.28930 5.33795 5.38796
5.44930 5.56927 5.62830 5.75864 5.84288 5.86816 6.25234 6.49994
6.60738 6.75385 6.89923 6.92644 6.95984 7.33023 7.51596 7.62271
7.85873 8.16963 8.64636 9.28171 10.81326
Molecular weight = 325.09amu
Principal moments of inertia in cm(-1)
A = 0.018285 B = 0.002789 C = 0.002445
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1530.906578 B =10037.985710 C =11447.196195
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 S -0.239 6.239
3 C -0.044 4.044
4 H 0.095 0.905
5 C -0.148 4.148
6 C -0.124 4.124
7 C 0.507 3.493
8 O -0.502 6.502
9 N -0.662 5.662
10 C 0.152 3.848
11 C -0.117 4.117
12 C -0.122 4.122
13 C -0.120 4.120
14 C -0.115 4.115
15 C -0.098 4.098
16 S -0.173 6.173
17 C 0.079 3.921
18 C -0.521 4.521
19 H 0.068 0.932
20 C 0.069 3.931
21 N -0.889 5.889
22 Si 0.908 3.092
23 H -0.273 1.273
24 H -0.284 1.284
25 H -0.273 1.273
26 H 0.073 0.927
27 H 0.098 0.902
28 H 0.075 0.925
29 H 0.067 0.933
30 H 0.070 0.930
31 H 0.059 0.941
32 H 0.112 0.888
33 H 0.105 0.895
34 H 0.413 0.587
35 H 0.146 0.854
36 H 0.120 0.880
37 H 0.120 0.880
38 H 0.134 0.866
39 H 0.044 0.956
40 H 0.044 0.956
41 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.615 -5.871 -10.381 22.107
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.292 4.292
2 S -0.013 6.013
3 C -0.173 4.173
4 H 0.113 0.887
5 C -0.207 4.207
6 C -0.165 4.165
7 C 0.294 3.706
8 O -0.376 6.376
9 N -0.306 5.306
10 C 0.052 3.948
11 C -0.139 4.139
12 C -0.143 4.143
13 C -0.140 4.140
14 C -0.140 4.140
15 C -0.213 4.213
16 S 0.072 5.928
17 C -0.068 4.068
18 C -0.560 4.560
19 H 0.086 0.914
20 C -0.136 4.136
21 N -0.526 5.526
22 Si 0.735 3.265
23 H -0.198 1.198
24 H -0.209 1.209
25 H -0.198 1.198
26 H 0.092 0.908
27 H 0.117 0.883
28 H 0.094 0.906
29 H 0.086 0.914
30 H 0.089 0.911
31 H 0.078 0.922
32 H 0.130 0.870
33 H 0.124 0.876
34 H 0.250 0.750
35 H 0.164 0.836
36 H 0.138 0.862
37 H 0.138 0.862
38 H 0.152 0.848
39 H 0.063 0.937
40 H 0.063 0.937
41 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -18.544 -6.357 -10.769 22.367
hybrid contribution 0.465 1.257 0.771 1.546
sum -18.079 -5.099 -9.998 21.279
Atomic orbital electron populations
1.23374 0.95033 1.06212 1.04606 1.86952 1.06513 1.10096 1.97734
1.22874 0.97546 0.95250 1.01654 0.88651 1.22110 1.01518 1.01085
0.96004 1.21542 0.94794 1.04244 0.95959 1.20577 0.81732 0.79179
0.89100 1.90710 1.52488 1.43540 1.50910 1.43544 1.09246 1.56411
1.21430 1.17222 0.94541 0.94975 0.88100 1.21251 1.00935 0.94838
0.96877 1.20950 0.96852 1.00509 0.96030 1.21024 0.95478 0.97443
1.00082 1.21215 1.00851 0.97185 0.94713 1.21794 0.99010 1.01747
0.98741 1.84963 1.29313 1.38627 1.39864 1.21348 0.90152 1.01155
0.94123 1.20566 1.07776 1.17779 1.09877 0.91422 1.24947 0.97209
0.96831 0.94627 1.69929 1.26849 1.40871 1.14933 0.86383 0.79684
0.81698 0.78734 1.19847 1.20949 1.19827 0.90838 0.88348 0.90555
0.91390 0.91125 0.92208 0.87043 0.87643 0.75027 0.83647 0.86207
0.86201 0.84801 0.93736 0.93741 0.92224
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.95 10.45 101.05 1.06 0.11 16
2 S -0.24 -2.57 20.24 -107.50 -2.18 -4.75 16
3 C -0.04 -0.40 2.44 -26.73 -0.07 -0.46 16
4 H 0.10 0.96 7.96 -51.93 -0.41 0.55 16
5 C -0.15 -0.95 9.10 37.16 0.34 -0.61 16
6 C -0.12 -1.15 5.18 -27.88 -0.14 -1.29 16
7 C 0.51 6.82 7.35 -10.99 -0.08 6.74 16
8 O -0.50 -8.04 11.96 5.55 0.07 -7.98 16
9 N -0.66 -9.69 5.17 -9.71 -0.05 -9.74 16
10 C 0.15 2.64 6.44 -83.43 -0.54 2.11 16
11 C -0.12 -1.95 8.72 -39.43 -0.34 -2.29 16
12 C -0.12 -1.86 10.04 -39.55 -0.40 -2.25 16
13 C -0.12 -1.92 10.04 -39.57 -0.40 -2.31 16
14 C -0.11 -2.15 9.36 -39.39 -0.37 -2.52 16
15 C -0.10 -1.87 6.12 -38.90 -0.24 -2.11 16
16 S -0.17 -3.60 20.55 -107.50 -2.21 -5.81 16
17 C 0.08 1.96 4.09 36.00 0.15 2.11 16
18 C -0.52 -14.03 9.13 -34.44 -0.31 -14.34 16
19 H 0.07 1.79 7.71 -52.49 -0.40 1.39 16
20 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16
21 N -0.89 -25.01 13.29 55.43 0.74 -24.27 16
22 Si 0.91 20.63 29.54 -169.99 -5.02 15.61 16
23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16
25 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16
26 H 0.07 0.45 7.14 -51.92 -0.37 0.08 16
27 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16
28 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16
29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16
30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16
31 H 0.06 0.35 6.92 -51.93 -0.36 -0.01 16
32 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16
33 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16
34 H 0.41 5.50 7.65 -40.82 -0.31 5.18 16
35 H 0.15 2.42 5.79 -52.48 -0.30 2.11 16
36 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16
37 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16
38 H 0.13 2.65 5.88 -52.48 -0.31 2.34 16
39 H 0.04 1.17 7.75 -51.92 -0.40 0.76 16
40 H 0.04 1.15 7.75 -51.92 -0.40 0.75 16
41 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16
LS Contribution 363.81 15.07 5.48 5.48
Total: -1.00 -30.43 363.81 -10.41 -40.84
By element:
Atomic # 1 Polarization: 11.79 SS G_CDS: -5.79 Total: 5.99 kcal
Atomic # 6 Polarization: -13.93 SS G_CDS: -1.44 Total: -15.38 kcal
Atomic # 7 Polarization: -34.70 SS G_CDS: 0.69 Total: -34.02 kcal
Atomic # 8 Polarization: -8.04 SS G_CDS: 0.07 Total: -7.98 kcal
Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal
Atomic # 16 Polarization: -6.17 SS G_CDS: -4.39 Total: -10.55 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -30.43 -10.41 -40.84 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000119548848.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.289 kcal
(2) G-P(sol) polarization free energy of solvation -30.427 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.138 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.546 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds