Wall clock time and date at job start Tue Mar 31 2020 14:06:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81399 * 1
3 3 C 1.81394 * 103.00374 * 2 1
4 4 H 1.08997 * 109.47605 * 55.00009 * 3 2 1
5 5 C 1.53004 * 109.47192 * 294.99841 * 3 2 1
6 6 C 1.53003 * 109.47136 * 175.00019 * 3 2 1
7 7 C 1.50698 * 109.46929 * 294.99716 * 6 3 2
8 8 O 1.21291 * 120.00422 * 0.02562 * 7 6 3
9 9 N 1.34779 * 119.99659 * 179.97438 * 7 6 3
10 10 C 1.40147 * 119.99800 * 185.52384 * 9 7 6
11 11 C 1.38646 * 120.09824 * 24.82423 * 10 9 7
12 12 C 1.38248 * 120.01163 * 180.02562 * 11 10 9
13 13 C 1.38302 * 120.20673 * 0.02562 * 12 11 10
14 14 C 1.38195 * 120.20051 * 359.97438 * 13 12 11
15 15 C 1.38785 * 119.98864 * 0.02562 * 14 13 12
16 16 S 1.76204 * 120.10527 * 180.02562 * 15 14 13
17 17 C 1.81404 * 103.00027 * 0.02562 * 16 15 14
18 18 C 1.50696 * 109.47166 * 180.02562 * 17 16 15
19 19 H 1.08000 * 119.99894 * 359.97438 * 18 17 16
20 20 C 1.37873 * 119.99693 * 180.02562 * 18 17 16
21 21 N 1.31511 * 120.00700 * 359.97438 * 20 18 17
22 22 Si 1.86804 * 119.99798 * 179.97438 * 20 18 17
23 23 H 1.48502 * 109.47386 * 59.99716 * 22 20 18
24 24 H 1.48497 * 109.47439 * 179.97438 * 22 20 18
25 25 H 1.48502 * 109.47347 * 299.99711 * 22 20 18
26 26 H 1.09004 * 109.47037 * 59.99665 * 1 2 3
27 27 H 1.08996 * 109.47688 * 180.02562 * 1 2 3
28 28 H 1.09000 * 109.46577 * 300.00727 * 1 2 3
29 29 H 1.08997 * 109.47032 * 180.02562 * 5 3 2
30 30 H 1.09007 * 109.46808 * 300.00584 * 5 3 2
31 31 H 1.08998 * 109.47050 * 60.00094 * 5 3 2
32 32 H 1.08998 * 109.46992 * 174.99507 * 6 3 2
33 33 H 1.09004 * 109.47323 * 54.99835 * 6 3 2
34 34 H 0.96998 * 120.00617 * 5.53570 * 9 7 6
35 35 H 1.08004 * 119.99322 * 0.04117 * 11 10 9
36 36 H 1.07997 * 119.89739 * 180.28219 * 12 11 10
37 37 H 1.08000 * 119.90068 * 179.97438 * 13 12 11
38 38 H 1.08006 * 120.00898 * 180.02562 * 14 13 12
39 39 H 1.08999 * 109.46846 * 299.99959 * 17 16 15
40 40 H 1.08999 * 109.46905 * 59.99928 * 17 16 15
41 41 H 0.96999 * 120.00355 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2222 1.7674 0.0000
4 1 1.7296 2.2541 0.8418
5 6 1.7429 2.4015 -1.3074
6 6 3.7371 1.9410 0.1257
7 6 4.1920 1.4268 1.4673
8 8 3.3841 0.9664 2.2460
9 7 5.4967 1.4777 1.8013
10 6 5.9369 0.8957 2.9978
11 6 5.2143 -0.1368 3.5758
12 6 5.6499 -0.7092 4.7564
13 6 6.8057 -0.2550 5.3651
14 6 7.5326 0.7737 4.7965
15 6 7.1029 1.3543 3.6114
16 16 8.0277 2.6656 2.8835
17 6 9.4129 2.8767 4.0357
18 6 10.3110 3.9825 3.5443
19 1 10.0726 4.5057 2.6300
20 6 11.4375 4.3255 4.2613
21 7 11.7281 3.6881 5.3743
22 14 12.5512 5.6959 3.6518
23 1 11.7791 6.9617 3.5695
24 1 13.6850 5.8688 4.5951
25 1 13.0747 5.3470 2.3066
26 1 -0.3633 0.5139 -0.8900
27 1 -0.3634 -1.0276 0.0005
28 1 -0.3632 0.5140 0.8900
29 1 1.9886 3.4635 -1.3076
30 1 2.2355 1.9148 -2.1492
31 1 0.6637 2.2779 -1.3970
32 1 3.9904 2.9974 0.0365
33 1 4.2341 1.3802 -0.6659
34 1 6.1311 1.9172 1.2137
35 1 4.3111 -0.4941 3.1035
36 1 5.0881 -1.5165 5.2026
37 1 7.1412 -0.7055 6.2875
38 1 8.4350 1.1258 5.2742
39 1 9.0284 3.1329 5.0229
40 1 9.9797 1.9476 4.0964
41 1 12.5209 3.9292 5.8785
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000119548848.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:06:07
Heat of formation + Delta-G solvation = -37.357683 kcal
Electronic energy + Delta-G solvation = -22068.832645 eV
Core-core repulsion = 18779.053519 eV
Total energy + Delta-G solvation = -3289.779126 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 325.091 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-41.58066 -39.45755 -35.96783 -35.51435 -35.31912 -32.14414 -31.16412 -30.61874
-29.85802 -28.44202 -25.48778 -24.24892 -23.85387 -22.63147 -21.27413 -19.40516
-18.45845 -18.05392 -17.91607 -17.57665 -16.81029 -16.52185 -16.09849 -15.91430
-15.34793 -15.21312 -14.83263 -14.75655 -14.69397 -14.55344 -14.28466 -14.24267
-13.89979 -13.56263 -13.22460 -13.12225 -12.90621 -12.74876 -12.72471 -12.53377
-12.34461 -12.17865 -11.88348 -11.66512 -11.50198 -10.98890 -10.87496 -10.78825
-10.67389 -10.50566 -9.28731 -8.46862 -8.35854 -8.18160 -6.50636 0.20703
0.34802 0.77231 0.81391 1.41026 1.43621 1.52207 1.60715 1.70771
1.77843 2.04752 2.35339 2.79198 2.99459 3.49111 3.64358 3.89511
4.10978 4.18605 4.22592 4.33960 4.36639 4.39708 4.49956 4.52175
4.53484 4.62866 4.77960 4.85476 4.86841 4.89374 4.92000 5.00648
5.17439 5.27542 5.30612 5.46734 5.52549 5.56672 5.81164 6.02302
6.37941 6.56372 7.07290 7.18293 8.75989
Molecular weight = 325.09amu
Principal moments of inertia in cm(-1)
A = 0.018285 B = 0.002789 C = 0.002445
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1530.906578 B =10037.985710 C =11447.196195
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 S -0.305 6.305
3 C -0.032 4.032
4 H 0.082 0.918
5 C -0.142 4.142
6 C -0.119 4.119
7 C 0.505 3.495
8 O -0.528 6.528
9 N -0.663 5.663
10 C 0.153 3.847
11 C -0.126 4.126
12 C -0.107 4.107
13 C -0.119 4.119
14 C -0.132 4.132
15 C -0.125 4.125
16 S -0.152 6.152
17 C 0.082 3.918
18 C -0.542 4.542
19 H 0.069 0.931
20 C 0.017 3.983
21 N -0.922 5.922
22 Si 0.978 3.022
23 H -0.265 1.265
24 H -0.279 1.279
25 H -0.264 1.264
26 H 0.091 0.909
27 H 0.105 0.895
28 H 0.074 0.926
29 H 0.083 0.917
30 H 0.074 0.926
31 H 0.065 0.935
32 H 0.138 0.862
33 H 0.121 0.879
34 H 0.418 0.582
35 H 0.148 0.852
36 H 0.156 0.844
37 H 0.147 0.853
38 H 0.112 0.888
39 H 0.019 0.981
40 H 0.021 0.979
41 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.956 -5.500 -11.862 23.858
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.278 4.278
2 S -0.079 6.079
3 C -0.161 4.161
4 H 0.101 0.899
5 C -0.201 4.201
6 C -0.159 4.159
7 C 0.294 3.706
8 O -0.404 6.404
9 N -0.308 5.308
10 C 0.052 3.948
11 C -0.147 4.147
12 C -0.128 4.128
13 C -0.140 4.140
14 C -0.156 4.156
15 C -0.241 4.241
16 S 0.093 5.907
17 C -0.065 4.065
18 C -0.581 4.581
19 H 0.087 0.913
20 C -0.185 4.185
21 N -0.561 5.561
22 Si 0.800 3.200
23 H -0.190 1.190
24 H -0.204 1.204
25 H -0.188 1.188
26 H 0.110 0.890
27 H 0.124 0.876
28 H 0.093 0.907
29 H 0.101 0.899
30 H 0.093 0.907
31 H 0.084 0.916
32 H 0.156 0.844
33 H 0.139 0.861
34 H 0.256 0.744
35 H 0.166 0.834
36 H 0.173 0.827
37 H 0.165 0.835
38 H 0.130 0.870
39 H 0.037 0.963
40 H 0.039 0.961
41 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -19.913 -5.994 -12.270 24.145
hybrid contribution 0.723 1.016 1.268 1.778
sum -19.190 -4.978 -11.002 22.674
Atomic orbital electron populations
1.23380 0.91974 1.06990 1.05422 1.87130 1.10109 1.12822 1.97887
1.22880 0.97137 0.93410 1.02682 0.89943 1.22073 1.01923 1.01675
0.94383 1.21655 0.95059 1.05783 0.93436 1.21357 0.80769 0.78244
0.90240 1.90689 1.52949 1.44644 1.52150 1.43673 1.10061 1.56414
1.20670 1.17372 0.93694 0.94881 0.88825 1.21435 1.00948 0.94794
0.97544 1.21364 0.96113 1.00299 0.95002 1.21292 0.95324 0.96455
1.00904 1.21212 1.00811 0.98534 0.95066 1.21806 1.00167 1.02319
0.99767 1.84519 1.27650 1.40173 1.38405 1.20985 0.91686 0.99606
0.94258 1.20927 1.08603 1.18420 1.10122 0.91258 1.25916 0.98679
0.99235 0.94626 1.70049 1.27487 1.42410 1.16107 0.85309 0.77618
0.78544 0.78488 1.18988 1.20354 1.18836 0.88985 0.87642 0.90690
0.89860 0.90670 0.91554 0.84381 0.86054 0.74427 0.83437 0.82654
0.83500 0.87012 0.96294 0.96065 0.91978
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.50 10.45 113.37 1.19 -0.32 16
2 S -0.30 -6.26 20.24 -56.49 -1.14 -7.40 16
3 C -0.03 -0.52 2.44 30.60 0.07 -0.45 16
4 H 0.08 1.56 7.96 -2.39 -0.02 1.54 16
5 C -0.14 -1.43 9.10 71.98 0.66 -0.78 16
6 C -0.12 -1.95 5.18 29.85 0.15 -1.79 16
7 C 0.50 13.04 7.35 87.66 0.64 13.68 16
8 O -0.53 -16.59 11.96 -3.06 -0.04 -16.62 16
9 N -0.66 -18.99 5.17 -303.01 -1.57 -20.56 16
10 C 0.15 5.29 6.44 38.22 0.25 5.54 16
11 C -0.13 -4.03 8.72 22.37 0.20 -3.84 16
12 C -0.11 -3.05 10.04 22.29 0.22 -2.82 16
13 C -0.12 -3.71 10.04 22.27 0.22 -3.49 16
14 C -0.13 -5.07 9.36 22.39 0.21 -4.86 16
15 C -0.13 -4.90 6.12 22.71 0.14 -4.76 16
16 S -0.15 -6.46 20.55 -56.49 -1.16 -7.62 16
17 C 0.08 4.29 4.09 71.23 0.29 4.59 16
18 C -0.54 -29.94 9.13 25.60 0.23 -29.70 16
19 H 0.07 3.71 7.71 -2.91 -0.02 3.69 16
20 C 0.02 0.93 5.46 84.65 0.46 1.39 16
21 N -0.92 -53.30 13.29 21.45 0.28 -53.02 16
22 Si 0.98 42.33 29.54 68.60 2.03 44.35 16
23 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16
24 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16
25 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16
26 H 0.09 0.91 7.14 -2.39 -0.02 0.89 16
27 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16
28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16
29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16
30 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16
31 H 0.07 0.60 6.92 -2.39 -0.02 0.58 16
32 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16
33 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16
34 H 0.42 10.82 7.65 -92.71 -0.71 10.11 16
35 H 0.15 4.75 5.79 -2.91 -0.02 4.74 16
36 H 0.16 3.33 8.06 -2.91 -0.02 3.30 16
37 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16
38 H 0.11 4.75 5.88 -2.91 -0.02 4.73 16
39 H 0.02 1.06 7.75 -2.39 -0.02 1.04 16
40 H 0.02 1.17 7.75 -2.39 -0.02 1.16 16
41 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16
Total: -1.00 -67.65 363.81 3.67 -63.98
By element:
Atomic # 1 Polarization: 24.17 SS G_CDS: 0.33 Total: 24.50 kcal
Atomic # 6 Polarization: -32.55 SS G_CDS: 4.94 Total: -27.62 kcal
Atomic # 7 Polarization: -72.29 SS G_CDS: -1.28 Total: -73.57 kcal
Atomic # 8 Polarization: -16.59 SS G_CDS: -0.04 Total: -16.62 kcal
Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.35 kcal
Atomic # 16 Polarization: -12.72 SS G_CDS: -2.30 Total: -15.03 kcal
Total: -67.65 3.67 -63.98 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000119548848.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.624 kcal
(2) G-P(sol) polarization free energy of solvation -67.653 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.030 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.981 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.358 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds