Wall clock time and date at job start Tue Mar 31 2020 14:38:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86800 * 120.00284 * 2 1
4 4 H 1.48496 * 109.47651 * 270.00495 * 3 2 1
5 5 H 1.48504 * 109.46920 * 30.00848 * 3 2 1
6 6 H 1.48497 * 109.47170 * 149.99920 * 3 2 1
7 7 C 1.37882 * 119.99947 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99721 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99695 * 359.97438 * 7 2 1
10 10 C 1.52997 * 109.47029 * 180.02562 * 9 7 2
11 11 C 1.52999 * 109.47127 * 179.97438 * 10 9 7
12 12 S 1.81404 * 109.46850 * 180.02562 * 11 10 9
13 13 O 1.42102 * 110.54512 * 68.37631 * 12 11 10
14 14 O 1.42104 * 110.54061 * 291.61961 * 12 11 10
15 15 N 1.65605 * 104.44731 * 180.02562 * 12 11 10
16 16 C 1.46505 * 119.99865 * 64.99800 * 15 12 11
17 17 H 1.08992 * 110.26829 * 334.37992 * 16 15 12
18 18 C 1.51368 * 110.30210 * 96.45678 * 16 15 12
19 19 C 1.38500 * 130.38870 * 316.17996 * 18 16 15
20 20 C 1.38105 * 120.21326 * 180.02562 * 19 18 16
21 21 C 1.38255 * 119.93554 * 0.30820 * 20 19 18
22 22 C 1.38106 * 119.93176 * 359.43372 * 21 20 19
23 23 C 1.38215 * 109.75954 * 136.20686 * 18 16 15
24 24 C 1.51367 * 109.75642 * 359.97438 * 23 18 16
25 25 C 1.54344 * 105.17470 * 342.81142 * 24 23 18
26 26 H 1.08994 * 110.82106 * 268.12382 * 25 24 23
27 27 O 1.42897 * 110.99361 * 144.64912 * 25 24 23
28 28 H 0.97003 * 119.99506 * 359.97438 * 1 2 3
29 29 H 1.08991 * 109.47255 * 59.99861 * 9 7 2
30 30 H 1.09002 * 109.46968 * 299.99545 * 9 7 2
31 31 H 1.09005 * 109.47180 * 59.99866 * 10 9 7
32 32 H 1.09002 * 109.47150 * 300.00368 * 10 9 7
33 33 H 1.08997 * 109.47335 * 60.00036 * 11 10 9
34 34 H 1.09002 * 109.47133 * 299.99526 * 11 10 9
35 35 H 0.96999 * 119.99831 * 244.99710 * 15 12 11
36 36 H 1.07997 * 119.89217 * 0.03390 * 19 18 16
37 37 H 1.08002 * 120.02929 * 180.02562 * 20 19 18
38 38 H 1.07999 * 120.03268 * 179.70269 * 21 20 19
39 39 H 1.08003 * 119.89363 * 180.27784 * 22 21 20
40 40 H 1.08997 * 110.30071 * 223.88148 * 24 23 18
41 41 H 1.09002 * 110.38483 * 101.77770 * 24 23 18
42 42 H 0.96702 * 114.00437 * 66.93112 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0465 -1.4000
5 1 1.4468 2.6526 0.7002
6 1 3.5468 1.4401 0.7000
7 6 2.0046 -1.1941 -0.0005
8 1 3.0846 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 6 2.2451 -3.6621 -0.0005
11 6 1.4801 -4.9871 0.0001
12 16 2.6589 -6.3659 0.0009
13 8 3.3556 -6.4257 1.2379
14 8 3.3556 -6.4269 -1.2361
15 7 1.7085 -7.7221 0.0008
16 6 0.8494 -8.0144 -1.1493
17 1 0.5986 -7.0942 -1.6769
18 6 1.5368 -8.9856 -2.0850
19 6 2.8444 -9.0203 -2.5402
20 6 3.2535 -10.0173 -3.4038
21 6 2.3539 -10.9808 -3.8209
22 6 1.0510 -10.9510 -3.3638
23 6 0.6391 -9.9525 -2.4969
24 6 -0.7129 -9.6975 -1.8658
25 6 -0.4352 -8.7368 -0.6902
26 1 -0.2596 -9.2923 0.2310
27 8 -1.5082 -7.8077 -0.5238
28 1 -0.4849 0.8401 0.0004
29 1 0.6240 -2.5567 -0.8902
30 1 0.6247 -2.5571 0.8897
31 1 2.8718 -3.6044 0.8895
32 1 2.8718 -3.6044 -0.8905
33 1 0.8531 -5.0451 -0.8896
34 1 0.8538 -5.0446 0.8904
35 1 1.7206 -8.3228 0.7623
36 1 3.5464 -8.2652 -2.2187
37 1 4.2739 -10.0417 -3.7566
38 1 2.6709 -11.7584 -4.5000
39 1 0.3499 -11.7065 -3.6864
40 1 -1.1410 -10.6303 -1.4990
41 1 -1.3856 -9.2304 -2.5851
42 1 -2.3380 -8.2125 -0.2363
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000126406975.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:38:16
Heat of formation + Delta-G solvation = -107.007263 kcal
Electronic energy + Delta-G solvation = -25410.003919 eV
Core-core repulsion = 21674.451689 eV
Total energy + Delta-G solvation = -3735.552230 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 325.118 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-40.62108 -37.59859 -36.90654 -35.79038 -35.24766 -34.64636 -33.32669 -32.16587
-30.87244 -28.34284 -27.78924 -26.55493 -23.71364 -22.71719 -21.34574 -21.18436
-20.66877 -19.32723 -17.99871 -17.27908 -17.16845 -16.52417 -16.12420 -15.69844
-15.51073 -15.39433 -14.65655 -14.47186 -14.41071 -14.06794 -13.83126 -13.57198
-13.36508 -13.00881 -12.61528 -12.54720 -12.26017 -12.06010 -11.93314 -11.81610
-11.75806 -11.61317 -11.29087 -11.11311 -10.92195 -10.90023 -10.80621 -10.53714
-10.37961 -9.92610 -9.81691 -9.32119 -9.07997 -8.95577 -8.79914 -8.38510
-6.03367 -4.06409 0.43813 1.12691 1.25448 2.78729 3.31977 3.37933
3.42069 3.55791 3.65182 3.89127 4.03068 4.32672 4.39925 4.44287
4.56731 4.68884 4.84347 4.90641 5.01447 5.02831 5.19210 5.22727
5.26500 5.33121 5.36744 5.44239 5.58923 5.74697 5.80550 5.94282
5.99534 6.25781 6.28837 6.42503 6.45114 6.48092 6.80912 6.87886
6.90259 7.27838 7.60232 7.70231 7.94833 8.35161 8.99862 9.58074
11.07834
Molecular weight = 325.12amu
Principal moments of inertia in cm(-1)
A = 0.018427 B = 0.002961 C = 0.002816
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1519.116380 B = 9455.439888 C = 9940.805244
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.895 5.895
2 C 0.057 3.943
3 Si 0.894 3.106
4 H -0.280 1.280
5 H -0.286 1.286
6 H -0.273 1.273
7 C -0.526 4.526
8 H 0.058 0.942
9 C 0.031 3.969
10 C -0.105 4.105
11 C -0.605 4.605
12 S 2.595 3.405
13 O -0.962 6.962
14 O -0.958 6.958
15 N -1.114 6.114
16 C 0.200 3.800
17 H 0.112 0.888
18 C -0.112 4.112
19 C -0.086 4.086
20 C -0.124 4.124
21 C -0.114 4.114
22 C -0.115 4.115
23 C -0.091 4.091
24 C -0.114 4.114
25 C 0.102 3.898
26 H 0.080 0.920
27 O -0.551 6.551
28 H 0.261 0.739
29 H 0.021 0.979
30 H 0.021 0.979
31 H 0.065 0.935
32 H 0.066 0.934
33 H 0.127 0.873
34 H 0.130 0.870
35 H 0.415 0.585
36 H 0.147 0.853
37 H 0.125 0.875
38 H 0.123 0.877
39 H 0.119 0.881
40 H 0.081 0.919
41 H 0.095 0.905
42 H 0.384 0.616
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.328 -25.445 -4.096 25.877
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.144 4.144
3 Si 0.722 3.278
4 H -0.206 1.206
5 H -0.212 1.212
6 H -0.198 1.198
7 C -0.564 4.564
8 H 0.076 0.924
9 C -0.007 4.007
10 C -0.145 4.145
11 C -0.737 4.737
12 S 2.692 3.308
13 O -0.953 6.953
14 O -0.948 6.948
15 N -0.869 5.869
16 C 0.092 3.908
17 H 0.129 0.871
18 C -0.114 4.114
19 C -0.105 4.105
20 C -0.142 4.142
21 C -0.132 4.132
22 C -0.133 4.133
23 C -0.091 4.091
24 C -0.152 4.152
25 C 0.041 3.959
26 H 0.098 0.902
27 O -0.357 6.357
28 H 0.071 0.929
29 H 0.039 0.961
30 H 0.039 0.961
31 H 0.084 0.916
32 H 0.084 0.916
33 H 0.146 0.854
34 H 0.149 0.851
35 H 0.249 0.751
36 H 0.165 0.835
37 H 0.143 0.857
38 H 0.141 0.859
39 H 0.137 0.863
40 H 0.099 0.901
41 H 0.113 0.887
42 H 0.232 0.768
Dipole moment (debyes) X Y Z Total
from point charges -1.058 -24.790 -4.412 25.202
hybrid contribution -0.758 0.409 0.391 0.946
sum -1.816 -24.381 -4.021 24.777
Atomic orbital electron populations
1.69964 1.06078 1.26738 1.50601 1.25023 0.94886 0.99349 0.95135
0.86557 0.79876 0.83206 0.78177 1.20575 1.21184 1.19753 1.21259
0.93238 0.90908 1.51033 0.92385 1.19058 0.93515 0.90374 0.97801
1.21506 0.99375 0.91698 1.01912 1.30509 1.16166 1.15493 1.11522
1.05458 0.75749 0.75253 0.74335 1.93582 1.70752 1.85860 1.45073
1.93521 1.70348 1.85438 1.45493 1.55813 1.61765 1.42514 1.26827
1.20030 0.87461 0.98507 0.84779 0.87072 1.20626 0.94570 0.96975
0.99230 1.21233 0.95489 0.98204 0.95542 1.21143 0.99886 0.95034
0.98175 1.21088 0.93375 0.98961 0.99770 1.20541 0.96222 0.98321
0.98179 1.20318 0.95373 0.95421 0.98036 1.21772 0.95196 1.00332
0.97856 1.22662 0.87049 0.89251 0.96959 0.90215 1.86576 1.22130
1.36108 1.90910 0.92913 0.96066 0.96086 0.91634 0.91552 0.85426
0.85119 0.75074 0.83519 0.85691 0.85914 0.86290 0.90075 0.88663
0.76759
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16
2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
3 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16
4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
6 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16
7 C -0.53 -14.99 9.11 -34.44 -0.31 -15.30 16
8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16
9 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16
10 C -0.11 -2.18 5.16 -26.73 -0.14 -2.32 16
11 C -0.60 -9.69 5.97 37.16 0.22 -9.46 16
12 S 2.60 38.48 5.40 -107.50 -0.58 37.90 16
13 O -0.96 -17.00 18.08 -57.54 -1.04 -18.04 16
14 O -0.96 -16.13 15.13 -57.54 -0.87 -17.00 16
15 N -1.11 -12.53 5.41 -4.98 -0.03 -12.56 16
16 C 0.20 2.21 3.03 -68.04 -0.21 2.00 16
17 H 0.11 1.30 7.19 -51.93 -0.37 0.92 16
18 C -0.11 -1.31 5.79 -104.21 -0.60 -1.91 16
19 C -0.09 -1.09 9.78 -39.53 -0.39 -1.48 16
20 C -0.12 -1.31 10.05 -39.62 -0.40 -1.71 16
21 C -0.11 -1.03 10.05 -39.62 -0.40 -1.43 16
22 C -0.11 -1.02 10.04 -39.53 -0.40 -1.42 16
23 C -0.09 -0.89 6.14 -104.21 -0.64 -1.53 16
24 C -0.11 -0.83 6.52 -26.85 -0.18 -1.01 16
25 C 0.10 0.84 4.14 -25.31 -0.10 0.73 16
26 H 0.08 0.53 7.87 -51.93 -0.41 0.12 16
27 O -0.55 -4.74 13.40 -35.23 -0.47 -5.22 16
28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
29 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16
30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16
31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16
32 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16
33 H 0.13 1.88 7.47 -51.93 -0.39 1.49 16
34 H 0.13 1.92 8.14 -51.92 -0.42 1.50 16
35 H 0.42 3.78 8.61 -34.47 -0.30 3.48 16
36 H 0.15 2.08 5.47 -52.49 -0.29 1.79 16
37 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16
38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16
39 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16
40 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16
41 H 0.10 0.68 8.10 -51.93 -0.42 0.26 16
42 H 0.38 1.53 9.12 45.56 0.42 1.95 16
LS Contribution 360.68 15.07 5.44 5.44
Total: -1.00 -36.36 360.68 -10.72 -47.08
By element:
Atomic # 1 Polarization: 9.47 SS G_CDS: -5.11 Total: 4.36 kcal
Atomic # 6 Polarization: -28.85 SS G_CDS: -3.77 Total: -32.63 kcal
Atomic # 7 Polarization: -39.36 SS G_CDS: 0.71 Total: -38.65 kcal
Atomic # 8 Polarization: -37.87 SS G_CDS: -2.38 Total: -40.25 kcal
Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal
Atomic # 16 Polarization: 38.48 SS G_CDS: -0.58 Total: 37.90 kcal
Total LS contribution 5.44 Total: 5.44 kcal
Total: -36.36 -10.72 -47.08 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000126406975.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.926 kcal
(2) G-P(sol) polarization free energy of solvation -36.362 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.288 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.081 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.007 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds