Wall clock time and date at job start Tue Mar 31 2020 14:38:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86800 * 120.00284 * 2 1
4 4 H 1.48496 * 109.47651 * 270.00495 * 3 2 1
5 5 H 1.48504 * 109.46920 * 30.00848 * 3 2 1
6 6 H 1.48497 * 109.47170 * 149.99920 * 3 2 1
7 7 C 1.37882 * 119.99947 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99721 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99695 * 359.97438 * 7 2 1
10 10 C 1.52997 * 109.47029 * 180.02562 * 9 7 2
11 11 C 1.52999 * 109.47127 * 179.97438 * 10 9 7
12 12 S 1.81404 * 109.46850 * 180.02562 * 11 10 9
13 13 O 1.42102 * 110.54512 * 68.37631 * 12 11 10
14 14 O 1.42104 * 110.54061 * 291.61961 * 12 11 10
15 15 N 1.65605 * 104.44731 * 180.02562 * 12 11 10
16 16 C 1.46505 * 119.99865 * 64.99800 * 15 12 11
17 17 H 1.08992 * 110.26829 * 334.37992 * 16 15 12
18 18 C 1.51368 * 110.30210 * 96.45678 * 16 15 12
19 19 C 1.38500 * 130.38870 * 316.17996 * 18 16 15
20 20 C 1.38105 * 120.21326 * 180.02562 * 19 18 16
21 21 C 1.38255 * 119.93554 * 0.30820 * 20 19 18
22 22 C 1.38106 * 119.93176 * 359.43372 * 21 20 19
23 23 C 1.38215 * 109.75954 * 136.20686 * 18 16 15
24 24 C 1.51367 * 109.75642 * 359.97438 * 23 18 16
25 25 C 1.54344 * 105.17470 * 342.81142 * 24 23 18
26 26 H 1.08994 * 110.82106 * 268.12382 * 25 24 23
27 27 O 1.42897 * 110.99361 * 144.64912 * 25 24 23
28 28 H 0.97003 * 119.99506 * 359.97438 * 1 2 3
29 29 H 1.08991 * 109.47255 * 59.99861 * 9 7 2
30 30 H 1.09002 * 109.46968 * 299.99545 * 9 7 2
31 31 H 1.09005 * 109.47180 * 59.99866 * 10 9 7
32 32 H 1.09002 * 109.47150 * 300.00368 * 10 9 7
33 33 H 1.08997 * 109.47335 * 60.00036 * 11 10 9
34 34 H 1.09002 * 109.47133 * 299.99526 * 11 10 9
35 35 H 0.96999 * 119.99831 * 244.99710 * 15 12 11
36 36 H 1.07997 * 119.89217 * 0.03390 * 19 18 16
37 37 H 1.08002 * 120.02929 * 180.02562 * 20 19 18
38 38 H 1.07999 * 120.03268 * 179.70269 * 21 20 19
39 39 H 1.08003 * 119.89363 * 180.27784 * 22 21 20
40 40 H 1.08997 * 110.30071 * 223.88148 * 24 23 18
41 41 H 1.09002 * 110.38483 * 101.77770 * 24 23 18
42 42 H 0.96702 * 114.00437 * 66.93112 * 27 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0465 -1.4000
5 1 1.4468 2.6526 0.7002
6 1 3.5468 1.4401 0.7000
7 6 2.0046 -1.1941 -0.0005
8 1 3.0846 -1.1941 -0.0010
9 6 1.2510 -2.4992 -0.0005
10 6 2.2451 -3.6621 -0.0005
11 6 1.4801 -4.9871 0.0001
12 16 2.6589 -6.3659 0.0009
13 8 3.3556 -6.4257 1.2379
14 8 3.3556 -6.4269 -1.2361
15 7 1.7085 -7.7221 0.0008
16 6 0.8494 -8.0144 -1.1493
17 1 0.5986 -7.0942 -1.6769
18 6 1.5368 -8.9856 -2.0850
19 6 2.8444 -9.0203 -2.5402
20 6 3.2535 -10.0173 -3.4038
21 6 2.3539 -10.9808 -3.8209
22 6 1.0510 -10.9510 -3.3638
23 6 0.6391 -9.9525 -2.4969
24 6 -0.7129 -9.6975 -1.8658
25 6 -0.4352 -8.7368 -0.6902
26 1 -0.2596 -9.2923 0.2310
27 8 -1.5082 -7.8077 -0.5238
28 1 -0.4849 0.8401 0.0004
29 1 0.6240 -2.5567 -0.8902
30 1 0.6247 -2.5571 0.8897
31 1 2.8718 -3.6044 0.8895
32 1 2.8718 -3.6044 -0.8905
33 1 0.8531 -5.0451 -0.8896
34 1 0.8538 -5.0446 0.8904
35 1 1.7206 -8.3228 0.7623
36 1 3.5464 -8.2652 -2.2187
37 1 4.2739 -10.0417 -3.7566
38 1 2.6709 -11.7584 -4.5000
39 1 0.3499 -11.7065 -3.6864
40 1 -1.1410 -10.6303 -1.4990
41 1 -1.3856 -9.2304 -2.5851
42 1 -2.3380 -8.2125 -0.2363
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000126406975.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:38:15
Heat of formation + Delta-G solvation = -134.844459 kcal
Electronic energy + Delta-G solvation = -25411.211030 eV
Core-core repulsion = 21674.451689 eV
Total energy + Delta-G solvation = -3736.759341 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 325.118 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.34498 -38.28436 -38.22169 -37.11539 -36.49511 -36.05146 -34.18616 -34.08384
-31.65603 -29.68817 -29.01847 -27.32828 -25.65450 -23.42794 -22.48866 -22.02363
-21.96376 -20.50292 -18.97077 -18.61611 -18.16241 -18.01907 -17.18540 -16.84664
-16.67821 -16.46916 -16.15392 -15.87367 -15.23305 -15.11445 -14.57628 -14.50827
-14.31724 -14.09558 -14.06537 -13.71802 -13.54624 -13.45032 -13.21861 -13.13295
-13.03017 -12.85105 -12.76896 -12.64473 -12.38168 -12.19238 -11.88415 -11.77062
-11.66682 -11.39878 -11.22201 -11.01612 -10.58665 -10.54636 -9.73511 -9.52596
-8.23406 -6.34912 -0.81029 0.37256 0.48434 1.39385 1.40553 1.51937
1.69067 2.39055 2.66323 2.82036 3.00973 3.09818 3.16689 3.37575
3.66258 3.70074 3.80690 3.93142 4.04806 4.13296 4.23076 4.30401
4.35685 4.41234 4.61861 4.62330 4.69854 4.78413 4.88491 4.92713
5.02637 5.05015 5.14220 5.25048 5.43539 5.54107 5.60415 5.65503
5.66561 5.77982 6.00524 6.11990 6.18007 6.80518 6.91600 7.34392
8.88261
Molecular weight = 325.12amu
Principal moments of inertia in cm(-1)
A = 0.018427 B = 0.002961 C = 0.002816
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1519.116380 B = 9455.439888 C = 9940.805244
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C 0.002 3.998
3 Si 0.965 3.035
4 H -0.271 1.271
5 H -0.279 1.279
6 H -0.264 1.264
7 C -0.553 4.553
8 H 0.061 0.939
9 C 0.032 3.968
10 C -0.105 4.105
11 C -0.608 4.608
12 S 2.626 3.374
13 O -0.989 6.989
14 O -0.978 6.978
15 N -1.097 6.097
16 C 0.187 3.813
17 H 0.099 0.901
18 C -0.133 4.133
19 C -0.118 4.118
20 C -0.137 4.137
21 C -0.113 4.113
22 C -0.115 4.115
23 C -0.094 4.094
24 C -0.106 4.106
25 C 0.108 3.892
26 H 0.101 0.899
27 O -0.571 6.571
28 H 0.265 0.735
29 H 0.001 0.999
30 H 0.002 0.998
31 H 0.067 0.933
32 H 0.067 0.933
33 H 0.138 0.862
34 H 0.144 0.856
35 H 0.427 0.573
36 H 0.122 0.878
37 H 0.135 0.865
38 H 0.151 0.849
39 H 0.149 0.851
40 H 0.111 0.889
41 H 0.099 0.901
42 H 0.404 0.596
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.995 -27.267 -4.403 27.782
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.196 4.196
3 Si 0.789 3.211
4 H -0.197 1.197
5 H -0.204 1.204
6 H -0.189 1.189
7 C -0.591 4.591
8 H 0.079 0.921
9 C -0.006 4.006
10 C -0.144 4.144
11 C -0.738 4.738
12 S 2.721 3.279
13 O -0.979 6.979
14 O -0.967 6.967
15 N -0.857 5.857
16 C 0.079 3.921
17 H 0.116 0.884
18 C -0.135 4.135
19 C -0.136 4.136
20 C -0.155 4.155
21 C -0.131 4.131
22 C -0.133 4.133
23 C -0.094 4.094
24 C -0.143 4.143
25 C 0.047 3.953
26 H 0.118 0.882
27 O -0.381 6.381
28 H 0.074 0.926
29 H 0.020 0.980
30 H 0.021 0.979
31 H 0.085 0.915
32 H 0.086 0.914
33 H 0.156 0.844
34 H 0.162 0.838
35 H 0.264 0.736
36 H 0.140 0.860
37 H 0.153 0.847
38 H 0.168 0.832
39 H 0.166 0.834
40 H 0.129 0.871
41 H 0.117 0.883
42 H 0.256 0.744
Dipole moment (debyes) X Y Z Total
from point charges -1.736 -26.617 -4.705 27.085
hybrid contribution -0.596 0.890 0.438 1.157
sum -2.331 -25.727 -4.267 26.182
Atomic orbital electron populations
1.70082 1.07676 1.27931 1.51272 1.25963 0.95838 1.03307 0.94510
0.85454 0.78695 0.78375 0.78598 1.19671 1.20434 1.18854 1.21736
0.93744 0.92460 1.51201 0.92104 1.18946 0.93975 0.91874 0.95832
1.21316 0.98654 0.92361 1.02111 1.30484 1.16587 1.13932 1.12824
1.04348 0.75167 0.75204 0.73150 1.93540 1.71709 1.86409 1.46262
1.93509 1.71052 1.85814 1.46369 1.55381 1.61530 1.41088 1.27665
1.20284 0.88852 0.98473 0.84445 0.88360 1.20736 0.94685 0.98027
1.00088 1.21230 0.95965 0.98945 0.97477 1.21350 1.00964 0.95131
0.98049 1.21442 0.93258 0.98831 0.99557 1.20942 0.96645 0.98436
0.97239 1.20668 0.96098 0.94822 0.97859 1.21782 0.93883 1.01358
0.97290 1.22637 0.85590 0.88785 0.98253 0.88155 1.86529 1.23301
1.37087 1.91175 0.92591 0.98044 0.97949 0.91480 0.91425 0.84377
0.83773 0.73559 0.86015 0.84730 0.83178 0.83370 0.87095 0.88323
0.74412
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16
2 C 0.00 0.12 5.46 84.66 0.46 0.58 16
3 Si 0.96 44.81 29.54 68.60 2.03 46.83 16
4 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16
5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16
6 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16
7 C -0.55 -32.16 9.11 25.60 0.23 -31.93 16
8 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16
9 C 0.03 1.71 4.97 29.85 0.15 1.85 16
10 C -0.11 -4.46 5.16 30.59 0.16 -4.30 16
11 C -0.61 -19.75 5.97 71.98 0.43 -19.32 16
12 S 2.63 78.85 5.40 -56.49 -0.30 78.54 16
13 O -0.99 -35.09 18.08 -127.65 -2.31 -37.40 16
14 O -0.98 -33.98 15.13 -127.65 -1.93 -35.91 16
15 N -1.10 -24.20 5.41 -169.68 -0.92 -25.12 16
16 C 0.19 4.00 3.03 44.92 0.14 4.14 16
17 H 0.10 2.32 7.19 -2.39 -0.02 2.30 16
18 C -0.13 -3.05 5.79 -19.59 -0.11 -3.16 16
19 C -0.12 -3.04 9.78 22.30 0.22 -2.83 16
20 C -0.14 -2.84 10.05 22.24 0.22 -2.61 16
21 C -0.11 -1.80 10.05 22.24 0.22 -1.58 16
22 C -0.11 -1.72 10.04 22.30 0.22 -1.49 16
23 C -0.09 -1.63 6.14 -19.60 -0.12 -1.75 16
24 C -0.11 -1.22 6.52 30.52 0.20 -1.02 16
25 C 0.11 1.53 4.14 31.51 0.13 1.66 16
26 H 0.10 1.01 7.87 -2.39 -0.02 0.99 16
27 O -0.57 -8.67 13.40 -148.98 -2.00 -10.67 16
28 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16
29 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16
30 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16
31 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16
32 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16
33 H 0.14 4.16 7.47 -2.39 -0.02 4.14 16
34 H 0.14 4.24 8.14 -2.39 -0.02 4.23 16
35 H 0.43 7.32 8.61 -96.74 -0.83 6.49 16
36 H 0.12 3.68 5.47 -2.91 -0.02 3.66 16
37 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16
38 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16
39 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16
40 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16
41 H 0.10 1.12 8.10 -2.39 -0.02 1.10 16
42 H 0.40 2.18 9.12 -74.06 -0.68 1.51 16
Total: -1.00 -79.67 360.68 -3.05 -82.72
By element:
Atomic # 1 Polarization: 19.56 SS G_CDS: -0.46 Total: 19.11 kcal
Atomic # 6 Polarization: -64.31 SS G_CDS: 2.55 Total: -61.76 kcal
Atomic # 7 Polarization: -80.85 SS G_CDS: -0.63 Total: -81.48 kcal
Atomic # 8 Polarization: -77.73 SS G_CDS: -6.24 Total: -83.97 kcal
Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal
Atomic # 16 Polarization: 78.85 SS G_CDS: -0.30 Total: 78.54 kcal
Total: -79.67 -3.05 -82.72 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000126406975.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.120 kcal
(2) G-P(sol) polarization free energy of solvation -79.672 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.792 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.053 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.724 kcal
(6) G-S(sol) free energy of system = (1) + (5) -134.844 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds