Wall clock time and date at job start Tue Mar 31 2020 14:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34773 * 120.00366 * 2 1 4 4 O 1.21563 * 119.99889 * 0.02562 * 3 2 1 5 5 C 1.47801 * 120.00545 * 180.02562 * 3 2 1 6 6 C 1.39640 * 120.09802 * 359.97438 * 5 3 2 7 7 C 1.37934 * 120.00255 * 180.02562 * 6 5 3 8 8 C 1.38387 * 120.20926 * 0.02562 * 7 6 5 9 9 Cl 1.73604 * 119.89905 * 179.97438 * 8 7 6 10 10 C 1.39083 * 120.20016 * 359.97438 * 8 7 6 11 11 N 1.40036 * 119.99920 * 179.97438 * 10 8 7 12 12 C 1.34778 * 119.99917 * 214.99315 * 11 10 8 13 13 O 1.21591 * 119.99811 * 355.51112 * 12 11 10 14 14 N 1.34774 * 120.00199 * 175.50483 * 12 11 10 15 15 C 1.46497 * 119.99916 * 180.27921 * 14 12 11 16 16 H 1.08993 * 109.47345 * 324.72090 * 15 14 12 17 17 C 1.53002 * 109.47391 * 84.72686 * 15 14 12 18 18 C 1.50708 * 109.46923 * 204.72288 * 15 14 12 19 19 H 1.07995 * 119.99784 * 0.02562 * 18 15 14 20 20 C 1.37873 * 119.99839 * 179.97438 * 18 15 14 21 21 N 1.31519 * 119.99943 * 179.97438 * 20 18 15 22 22 Si 1.86798 * 120.00363 * 0.02562 * 20 18 15 23 23 H 1.48500 * 109.47422 * 89.99361 * 22 20 18 24 24 H 1.48498 * 109.47456 * 209.99686 * 22 20 18 25 25 H 1.48505 * 109.46821 * 329.99976 * 22 20 18 26 26 C 1.38543 * 119.99540 * 0.25225 * 10 8 7 27 27 H 1.08994 * 109.47020 * 299.99695 * 1 2 3 28 28 H 1.08997 * 109.46720 * 60.00232 * 1 2 3 29 29 H 1.09005 * 109.46678 * 179.97438 * 1 2 3 30 30 H 0.97011 * 120.00240 * 180.02562 * 2 1 3 31 31 H 1.07994 * 119.99637 * 0.02562 * 6 5 3 32 32 H 1.07996 * 119.89475 * 179.97438 * 7 6 5 33 33 H 0.97002 * 120.00183 * 34.99805 * 11 10 8 34 34 H 0.96999 * 119.99646 * 359.97438 * 14 12 11 35 35 H 1.09004 * 109.46555 * 299.99858 * 17 15 14 36 36 H 1.09002 * 109.47076 * 59.99447 * 17 15 14 37 37 H 1.08995 * 109.47272 * 179.97438 * 17 15 14 38 38 H 0.97000 * 120.00017 * 180.02562 * 21 20 18 39 39 H 1.08000 * 120.10417 * 179.72362 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5311 2.2199 0.0005 5 6 3.6169 1.1672 -0.0006 6 6 4.3172 -0.0409 -0.0006 7 6 5.6966 -0.0386 -0.0006 8 6 6.3908 1.1585 0.0000 9 17 8.1269 1.1521 0.0006 10 6 5.7020 2.3668 0.0000 11 7 6.4088 3.5757 0.0011 12 6 5.9229 4.6398 0.6705 13 8 4.8327 4.5756 1.2051 14 7 6.6455 5.7748 0.7476 15 6 6.1200 6.9293 1.4805 16 1 5.0387 6.9794 1.3526 17 6 6.4515 6.7838 2.9670 18 6 6.7479 8.1912 0.9470 19 1 7.4662 8.1384 0.1423 20 6 6.4046 9.4130 1.4856 21 7 6.9529 10.5142 1.0204 22 14 5.1616 9.5044 2.8771 23 1 5.8685 9.4081 4.1795 24 1 4.4313 10.7953 2.8045 25 1 4.1969 8.3822 2.7534 26 6 4.3166 2.3742 0.0047 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9501 -0.8401 -0.0004 31 1 3.7788 -0.9771 -0.0006 32 1 6.2364 -0.9739 -0.0002 33 1 7.2480 3.6473 -0.4801 34 1 7.5154 5.8258 0.3215 35 1 5.9974 5.8711 3.3529 36 1 7.5329 6.7337 3.0949 37 1 6.0609 7.6430 3.5122 38 1 6.7117 11.3738 1.3996 39 1 3.7799 3.3114 0.0092 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156260592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:24 Heat of formation + Delta-G solvation = -32.824765 kcal Electronic energy + Delta-G solvation = -24722.992184 eV Core-core repulsion = 20885.072698 eV Total energy + Delta-G solvation = -3837.919485 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.77113 -39.76089 -38.40253 -36.65306 -35.48378 -34.87670 -34.40441 -32.45763 -31.26250 -30.54458 -28.95603 -27.12204 -25.19385 -23.68318 -23.44572 -21.54235 -20.62386 -20.03295 -18.75025 -18.42718 -16.80617 -16.66080 -16.36933 -16.19746 -15.47072 -15.29912 -15.14777 -14.69905 -14.27237 -14.07300 -13.87438 -13.69483 -13.26892 -13.07219 -12.95749 -12.79372 -12.49053 -12.19367 -12.09237 -11.90732 -11.64455 -11.35188 -11.18231 -10.79711 -10.47844 -10.18086 -10.15295 -9.81806 -9.49084 -9.42461 -9.23876 -9.01298 -8.77953 -8.43778 -8.06469 -6.21097 -4.24062 0.45591 1.06935 1.82342 2.56028 2.79393 2.99112 3.25106 3.37608 3.43098 3.45225 3.72441 4.32520 4.42252 4.47168 4.61184 4.72535 4.90768 5.07099 5.10622 5.14052 5.24157 5.51965 5.55027 5.76610 5.90632 6.02328 6.07978 6.29406 6.31068 6.36267 6.55417 6.76143 6.77492 6.98282 7.19458 7.25608 7.37432 7.50382 8.00742 8.22656 8.53780 8.76266 8.97801 9.39383 10.90944 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.003569 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.353037 B = 7843.042655 C = 9708.546398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.734 5.734 3 C 0.557 3.443 4 O -0.520 6.520 5 C -0.115 4.115 6 C -0.103 4.103 7 C -0.098 4.098 8 C -0.051 4.051 9 Cl -0.060 7.060 10 C 0.187 3.813 11 N -0.690 5.690 12 C 0.695 3.305 13 O -0.576 6.576 14 N -0.707 5.707 15 C 0.253 3.747 16 H 0.052 0.948 17 C -0.163 4.163 18 C -0.536 4.536 19 H 0.081 0.919 20 C 0.079 3.921 21 N -0.892 5.892 22 Si 0.885 3.115 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.260 1.260 26 C -0.051 4.051 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.400 0.600 31 H 0.133 0.867 32 H 0.142 0.858 33 H 0.408 0.592 34 H 0.394 0.606 35 H 0.037 0.963 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.268 0.732 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.463 -26.703 -3.550 27.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.387 5.387 3 C 0.344 3.656 4 O -0.396 6.396 5 C -0.119 4.119 6 C -0.123 4.123 7 C -0.117 4.117 8 C -0.081 4.081 9 Cl -0.031 7.031 10 C 0.089 3.911 11 N -0.338 5.338 12 C 0.395 3.605 13 O -0.454 6.454 14 N -0.358 5.358 15 C 0.149 3.851 16 H 0.069 0.931 17 C -0.221 4.221 18 C -0.574 4.574 19 H 0.099 0.901 20 C -0.124 4.124 21 N -0.529 5.529 22 Si 0.714 3.286 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.185 1.185 26 C -0.073 4.073 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.235 0.765 31 H 0.150 0.850 32 H 0.159 0.841 33 H 0.245 0.755 34 H 0.227 0.773 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.730 -25.606 -3.002 26.212 hybrid contribution 0.772 -0.212 0.371 0.883 sum -3.958 -25.818 -2.631 26.251 Atomic orbital electron populations 1.21556 0.79140 1.02206 1.02697 1.45676 1.07879 1.08466 1.76716 1.18224 0.87112 0.83814 0.76410 1.90850 1.69683 1.30997 1.48035 1.19839 0.92942 0.93871 1.05252 1.21075 0.93543 0.97005 1.00681 1.20710 0.93747 0.96365 1.00895 1.20996 0.84936 0.93862 1.08307 1.98377 1.09085 1.98765 1.96865 1.17132 0.90755 0.83980 0.99218 1.42812 1.26740 1.09431 1.54866 1.16101 0.84653 0.80301 0.79432 1.90918 1.20385 1.82287 1.51787 1.45468 1.21541 1.12055 1.56734 1.19071 0.96264 0.82408 0.87314 0.93067 1.22481 1.01118 0.99411 0.99092 1.21010 1.26969 0.88673 1.20738 0.90141 1.24806 0.95656 0.95300 0.96670 1.69864 1.42775 0.98135 1.42093 0.86885 0.82048 0.77350 0.82304 1.20278 1.22093 1.18493 1.21579 0.91584 0.99783 0.94322 0.91978 0.92018 0.90585 0.76486 0.84951 0.84069 0.75506 0.77260 0.94428 0.92814 0.93328 0.92232 0.81395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.70 59.85 0.64 1.27 16 2 N -0.73 -6.22 5.66 -68.06 -0.39 -6.61 16 3 C 0.56 7.37 7.77 -12.35 -0.10 7.27 16 4 O -0.52 -9.35 16.34 5.31 0.09 -9.26 16 5 C -0.11 -1.43 5.87 -104.99 -0.62 -2.05 16 6 C -0.10 -0.87 9.54 -39.17 -0.37 -1.25 16 7 C -0.10 -0.85 9.80 -39.64 -0.39 -1.24 16 8 C -0.05 -0.57 6.34 -39.21 -0.25 -0.82 16 9 Cl -0.06 -0.61 27.93 -51.86 -1.45 -2.06 16 10 C 0.19 2.65 6.30 -83.68 -0.53 2.12 16 11 N -0.69 -10.24 5.05 -14.23 -0.07 -10.31 16 12 C 0.69 13.39 8.37 -86.92 -0.73 12.66 16 13 O -0.58 -13.19 13.42 5.29 0.07 -13.12 16 14 N -0.71 -14.02 5.07 -59.81 -0.30 -14.33 16 15 C 0.25 6.06 2.15 -69.08 -0.15 5.91 16 16 H 0.05 1.36 6.64 -51.93 -0.34 1.02 16 17 C -0.16 -3.68 8.96 37.16 0.33 -3.35 16 18 C -0.54 -14.47 9.31 -34.44 -0.32 -14.79 16 19 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 20 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 21 N -0.89 -26.46 13.96 55.43 0.77 -25.69 16 22 Si 0.88 21.96 24.37 -169.99 -4.14 17.82 16 23 H -0.28 -6.62 6.87 56.52 0.39 -6.23 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.26 -6.47 6.53 56.52 0.37 -6.10 16 26 C -0.05 -0.80 8.24 -38.99 -0.32 -1.12 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.40 1.96 6.86 -40.82 -0.28 1.68 16 31 H 0.13 0.59 6.39 -52.49 -0.34 0.25 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.41 4.93 8.09 -40.82 -0.33 4.60 16 34 H 0.39 6.76 8.56 -40.82 -0.35 6.41 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.17 3.24 5.78 -52.49 -0.30 2.94 16 LS Contribution 341.77 15.07 5.15 5.15 Total: -1.00 -35.04 341.77 -7.41 -42.45 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -4.25 Total: 9.19 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: -2.89 Total: 6.77 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.01 Total: -56.93 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: 0.16 Total: -22.38 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.14 Total: 17.82 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.45 Total: -2.06 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.04 -7.41 -42.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156260592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.629 kcal (2) G-P(sol) polarization free energy of solvation -35.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds